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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027284 ID=TCONS_00027284|Name=TCONS_00027284|organism=Clytia hemisphaerica|type=transcript|length=6220bpRun BLAST on NCBI protein sequence of TCONS_00027284-protein >TCONS_00027284-protein ID=TCONS_00027284-protein|Name=TCONS_00027284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1184bp MIQMRQTLQPKIDITTNTSVKSHVIENHVTRRATNHRQGIHTMTPKTLGRRun BLAST on NCBI transcript from alignment at sc0000613:81791..96858+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027284 ID=TCONS_00027284|Name=TCONS_00027284|organism=Clytia hemisphaerica|type=transcript|length=15068bp|location=Sequence derived from alignment at sc0000613:81791..96858+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000613:81791..96858+ >TCONS_00027284 ID=TCONS_00027284|Name=TCONS_00027284|organism=Clytia hemisphaerica|type=CDS|length=56880bp|location=Sequence derived from alignment at sc0000613:81791..96858+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027284 vs. Swiss-Prot (Human)
Match: ZO1 (Tight junction protein ZO-1 OS=Homo sapiens GN=TJP1 PE=1 SV=3) HSP 1 Score: 266.544 bits (680), Expect = 1.969e-71 Identity = 162/417 (38.85%), Postives = 239/417 (57.31%), Query Frame = 1
Query: 1771 VAGGNAVGIFVAAIRPDSAAAQEGLKTGDQIIMCNEIDFSDITREEAVLILLALP--DDVSLVVESKKEVFE-AVKKDLGDNFFIRTNFDHMDKANQNELVFQKAEIFNVRDTMYQGLIGYWQAQRVGKSGTMLERGVLPNKSRAEQLAIAQKTEDKQANTPGRSKVKRRGSTGGTLKRHKFVSQDRLDESSFAEGVQVPAYERVVLKVADFMRPVVVLGALADLVRYKLLEEMPDRFDVPT--PMDVGRHDDRPYADTIKISEIRNVIAKNKHCLLDITPEGIEMLTHAQLCPIVVLLKSPSRGVVRDMRASLVKELMTSPTGVPGFHGDPLAPKQVKRVFSNAKKLEEFYPHTFTAKINTHIAGGDALSREFYIKLKEIIFTQQAQSAWMPEEKPSEVMDDMVFHPPNYMSYLSG 3006
+AGGN VGIFVA + DS AA+EGL+ GDQI+ N +DF++I REEAVL LL LP ++V+++ + KK+V+ V+ D+GD+F+IRT+F++ +K + L F K E+F V DT+Y G +G W A R+GK+ +ERG++PNK+RAEQLA Q T K A + RG KR+ + + R D S+ + PAYERVVL+ A F+RPV + G +AD+ R KL E PD + + P D G D+ + I++ I+ +I ++KH LLD+TP ++ L +AQ PIVV L S+ V+ MR L P + K ++++ + KL + H FT IN ++++ +Y LKE I QQ Q W+ E K D + + +SYLS
Sbjct: 437 LAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEY-EKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSS--KRN--LRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEPRDAG--TDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLC----------------PESRKSARKLYERSHKLRKNNHHLFTTTINL-----NSMNDGWYGALKEAIQQQQNQLVWVSEGKADGATSDDLDLHDDRLSYLSA 825 HSP 2 Score: 152.14 bits (383), Expect = 1.721e-36 Identity = 107/304 (35.20%), Postives = 139/304 (45.72%), Query Frame = 1
Query: 4081 PQRDHYAQNSYKPSAQFPEVKRVNPKPQV-----------VDEPYNNVRNTYEQESEPPSRPKHPGYEYVKPFKNVQEPASPTHDYDYPRNDYDQPRATEEPHYRNPPSSRNDGYRV------PPTYRGNSYDDEYYPPYQVPANPSTARNGHHSTGGEDEPKVIATARGVFDHRGGLLESAETNVSIYIPAGALPDGKKQEIYFKVCQDSKYMPPLDSNSGETLLSPLVMCGPHGLKFRKPIELRLPHKGASNDSMAFSLKSSDSPVGHPGQWKNVRLGAKDLDSGRAYQVTEDTVSVLVDHF 4941
P R+ AQ ++ P FP+ VN Q +PY + +E++ E P F + P+ H D P+ + H P + G P Y+ N+ P +P +PS ED V+ATARG+F+ GG+L S ET VSI IP GA+P+G +QEIYFKVC+D+ +PPLD GETLLSPLVMCGPHGLKF KP+ELRLPH P W+N K L Y V + VSVL+DHF
Sbjct: 1488 PNREDTAQAAFYPQKSFPDKAPVNGTEQTQKTVTPAYNRFTPKPYTSSARPFERKFESPK------------FNHNLLPSETAHKPDLSSKTPTSPKTLVKSHSLAQPPEFDSGVETFSIHAEKPKYQINNISTV---PKAIPVSPSAVEEDE----DEDGHTVVATARGIFNSNGGVLSSIETGVSIIIPQGAIPEGVEQEIYFKVCRDNSILPPLDKEKGETLLSPLVMCGPHGLKFLKPVELRLPH-------------------CDPKTWQN-----KCLPGDPNYLVGANCVSVLIDHF 1748 The following BLAST results are available for this feature:
BLAST of TCONS_00027284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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