TCONS_00027301 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027301
Unique Name	TCONS_00027301
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1857

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000613:174383..177900-
coding sequence from alignment at sc0000613:174383..177900-

transcript sequence

>TCONS_00027301 ID=TCONS_00027301|Name=TCONS_00027301|organism=Clytia hemisphaerica|type=transcript|length=1857bp
AAAAGACTTGGTTGGAGTCTCTTAACTGTTTGTTTGTTATACTGAACTTG
GAAGATTTTTACACTGAAGTTTTGATCTGAGGGGTAGTTTTCAATGGGAT
ACTCAACGTGTTTACTATTTACAATATCATGAAGGAATGGTTTCCATACC
ATGTAGagctaaatttcttttcaaaaattataaatcGAACAATGATGAAT
CTTGTTACGTTCGTTTGATTATGTTTACTCTTTACTTCATTCCTAGATAA
AGCTTTTCAAGATGAAGCACTTTCCGTCTAGTACATTACTACTGCTGTTA
GTGTTAACACAAATCGATATAATCTCAAGTTCACCCTTGTGTTACAATGG
AACAGAGTCCTCTTGTTGTCAAACAGTTGATGAATTTTGTCGCCACTATG
ATATCGATCCTGGTAAAGACATTTACACATTCAACAAGGCTGATATAGAA
TACTACAGGATTGCAAAGCCTCTGAAATATGGGATGGTGATACGATTAAG
GTGGATTGACGTCGAAATGTCTGGGGAGATGAGAAGCTGCGAAGAGGGCA
CCATTACTGTTTTTGTTGGATGTTCAGAGCCAAGAGAATACGGTCCGTTT
TGCGGACGAGTTCGACCGAACAATTTCTTCACTTTAGAGGGTTGTATAGT
GATCAAAGTCGACCAGGTCGGTAAAAAAGATGAGAGaagaaaatacccta
aaattcGATTCATGTTCGATCATTTAAACGAATTGGATATTGTGAAAGGA
TCCAGAATACTTCCGTGTCGCGAAGAAGGAGTAATAGTATCAGGGATGAA
GTCTCTTAGTGGTGTCATCACATCACCCGAATGGCCTATTGGTTTCCACC
GACATTACCCAACGTCATGTCTTTGGAGAATCAAAGCACAAAAAGGATTT
GTNCATTGGTTTCCGCCGACATTACCCAACGTCATGTCTTTGGAGAATCA
AAGCACAAAAAGGATTTGTCATTCAATTAAATTTGGTGTTTACTGGCAAA
GTATTTGAATCCATTCTTCAATCGTGTGGAAAGTCATCACATCTTCGTAT
CACAGGcaagaaatcaaatgggatggAACCACTGTGCAACCACATGCGTG
GAAGCAGCCTTACACTAAACACGCAATCCAACGAAGTGGAGATCCGAATG
TCTTACACATCTGGAAAGTTCACACGAGGTTTTGTTTTGGGCTGGACAAC
CTTTAAAAAGCCAGTTGAAGcctcagaaaaaattaatatcGGGAAAATCT
TGATCCCACTTCTTGGTATATTGCTCTTCTTCTCCATCACGTGCAATATT
GGAAGAATGTGTCGCCGAAGACAACAACAAGTTTGCGAAAGGAATCTGAT
ATCACATGACGCACACACTGACCAAATTGGCAGGAAGAACAGTATTTTCA
TTGAAAACGGTAAAACAGAAGACTTGGCAAGATCAAAATGAATCGCTGAA
TGACCTTCCGCCACCTTACGAAGAAGCCGTTGCTGAGGCAGACAAGGTCT
GAACGATAAATGCTAAAAACCAATAAAGACTTGGAGGAAATAACTCAGTA
AATATTCTGATCTCAAAAATGAAAGCATGAtaatgatttatttttaaaac
tatttCTTAAATGTGGTTAAAGCCTTCAGTTGGAtcttagtttaattttt
ctaatgaTGGAGTTGATTGTAAAgtcaatttagaatttttttacggTTTT
ACAGTATATTTACAGTTTTTCTTTACGATTTAAGAATAAACTTAAAACAT
TTCTTTacgattcaaaataaataaacaacacaaaaatttgattttattca
aacaaaGCTTTTCGAGTCTTAACTGCTCATCATCAGgttaaaaatgacat
ttctAGG

Run BLAST on NCBI

protein sequence of TCONS_00027301-protein

>TCONS_00027301-protein ID=TCONS_00027301-protein|Name=TCONS_00027301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MKHFPSSTLLLLLVLTQIDIISSSPLCYNGTESSCCQTVDEFCRHYDIDP
GKDIYTFNKADIEYYRIAKPLKYGMVIRLRWIDVEMSGEMRSCEEGTITV
FVGCSEPREYGPFCGRVRPNNFFTLEGCIVIKVDQVGKKDERRKYPKIRF
MFDHLNELDIVKGSRILPCREEGVIVSGMKSLSGVITSPEWPIGFHRHYP
TSCLWRIKAQKGFXHWFPPTLPNVMSLENQSTKRICHSIKFGVYWQSI

Run BLAST on NCBI

transcript from alignment at sc0000613:174383..177900-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027301 ID=TCONS_00027301|Name=TCONS_00027301|organism=Clytia hemisphaerica|type=transcript|length=3518bp|location=Sequence derived from alignment at sc0000613:174383..177900- (Clytia hemisphaerica)
AAAAGACTTGGTTGGAGTCTCTTAACTGTTTGTTTGTTATACTGAACTTG
GAAGATTTTTACACTGAAGTTTTGATCTGAGGGGTAGTTTTCAATGGGAT
ACTCAACGTGTTTACTATTTACAATATCATGAAGGAATGGTTTCCATACC
ATGTAGAGCTAAATTTCTTTTCAAAAATTATAAATCGAACAATGATGAAT
CTTGTTACGTTCGTTTGATTATGTTTACTCTTTACTTCATTCCTAGATAA
AGCTTTTCAAGATGAAGCACTTTCCGTCTAGTACATTACTACTGCTGTTA
GTGTTAACACAAATCGATATAATCTCAAGTTCACCCTTGTGTTACAATGG
AACAGAGTCCTCTTGTTGTCAAACAGTTGATGAATTTTGTCGCCACTATG
ATATCGATCCTGGTAAAGACATTTACACATTCAACAAGGCTGATATAGAA
TACTACAGGATTGCAAAGCCTCTGAAATATGGGATGGTGATACGATTAAG
GTGGATTGACGTCGAAATGTCTGGGGAGATGAGAAGCTGCGAAGAGGGCA
CCATTACTGTTTTTGTTGGGTGAGCCTCCTTACCTATTTGACTTCCTAGA
AGGAACTAGTCCCTTTTATAATGGTTAAAGCTTCTTATCCCTATTTATAA
GCAACAAGGAAAGGGAAGATTTGAAGAGATTTTATTTGCTTCAAAGAAGT
GATTTATAAAAATTAGGTAACTATTTGTGTCAAACACTTACCTGAGAAAA
TGGCCTATTTCTCGGTTAGGGAAATTTTTTGCGAAAAGGGGAGGGTAAAA
AAGAAAGAATCATTTATAAAGTGGGGGATAGAGGCCCCTTTAGGCACTAT
ACTAACCATGCCAATGGCACAAGGACTAAGTCATTTTCTGAACATGTGCT
TATGACTCGAGGATCTATTTTCTTAATGTTAATTTACATCAATAATATTC
TACCAATATGATAATGTGGTACGAATAATTATAGCTAAAATTATCAAATT
ATCTTTTTTAGATGTTCAGAGCCAAGAGAATACGGTCCGTTTTGCGGACG
AGTTCGACCGAACAATTTCTTCACTTTAGAGGGTTGTATAGTGATCAAAG
TCGACCAGGTCGGTAAAAAAGATGAGAGAAGAAAATACCCTAAAATTCGA
TTCATGTTCGATCATTTAAACGAATTGGATATTGTGAAAGGATCCAGAAT
ACTTCCGTGTCGCGAAGAAGGGTAACAACAAGATTAATATTCAATTGATT
TTGTCATGTAACATCTTAAATGCCTTGTAAAATTCACTTCCCAGAAGCTC
TTTTTACATCGAAACGACATCAGCAAATATGCGGATATCTCCTACGAAAA
TGACAGTAAAGGAAGCGACGCCGGGTATCGGTTAGATCAAAGTATCTTGT
TTATACTCCGAAACTTGAGTAAAGAAAATCTTGTGAAACTATCGAAAAAG
TCCGTTTTCAACGACACTAATACACAAGTATGTATTCTTGAGAATCAAGC
TCATCACTGGAATATCATAAAAAAATATTTCAGCGATTTGCAAAGTGAGC
TTGGTCTTATAAGAAAGAAACAGTAGATTATTTCCAGATTTCCAGATTCT
AGGCGCTCCGTTTGGGAAAAGAAAGAAATCAAAATCTATTCATTTGACTT
AACTGACTCCAGATTTTTTTTAGAGTAATAGTATCAGGGATGAAGTCTCT
TAGTGGTGTCATCACATCACCCGAATGGCCTATTGGTTTCCACCGACATT
ACCCAACGTCATGTCTTTGGAGAATCAAAGCACAAAAAGGATTTGTNCAT
TGGTTTCCGCCGACATTACCCAACGTCATGTCTTTGGAGAATCAAAGCAC
AAAAAGGATTTGTCATTCAATTAAATTTGGTGTTTACTGGCAAAGTATTT
GAATCCATTCTTCAATCGTGTGGAAAGTCATCACATCTTCGTATCACAGG
TTTGTATTTCAAATTCAATCTTACTATAATTCTAATACACTTTTTTAGAA
TTTTAGAATGTAAATGAGGTTGTGGTATATAAAAAATGAAAGTACAGGAA
AATCTCAAAGGTCTTGAAAAGCAGGTAGTAAGTATAGTATAATAAAAGAA
GCACGAATCCTTTAGAGGATGTCAGAAGCCAAGGTTAAGTTCATTCCGCC
TGTTATGCTACTCCTTGAAAATTACAAAAAATGTTCCCTATAAAAATCTG
CAAATCTGCTTTCATAAACAGAGCATTCGGTATTTTGTAGGCAAGAAATC
AAATGGGATGGAACCACTGTGCAACCACATGCGTGGAAGCAGCCTTACAC
TAAACACGCAATCCAACGAAGTGGAGATCCGAATGTCTTACACATCTGGA
AAGTTCACACGAGGTTTTGTTTTGGGCTGGACAACCTTTAAAAAGCCAGT
TGAAGGTAACCAGTGTTAGAAAACTCATCTATTGAGAGATGGTTTCGTCA
TCCCTGAGTTGTAAAAGTTAAAAATGATCAATTGTGTCACAATAACGACA
TTCGCGATGACGGAATTTTCCAATAAATTGACAATTGAGTATTTGTCCCC
ACTGAGGGAATCCAGGGCACTTAGTTGCACCTCAAATAGTCTCTAGCCCC
TAACTAAAGAATACATAAATACATCTGTTATTCTCATTTTTTGTAGCCTC
AGAAAAAATTAATATCGGGAAAATCTTGATCCCACTTCTTGGTATATTGC
TCTTCTTCTCCATCACGTGCAATATTGGAAGAATGTGTCGCCGAAGACAA
CAACAAGTTTGCGAAAGGAATCTGATATCACATGACGCACACACTGACCA
AATTGGCAGGAAGAACAGTATTTTCATTGAAAACGGTAAAACAGAAGGTA
TCAGTGTATGAGAGTTCTGTAATCTTTGTGCCTATTCTCTAGTGGTTAAA
ACGTACCATTGATGTATTTCTAGAACTGAGATTTAAGAACTGGTAGCGGC
TTGGATAGATAAGTTTATTTGCTTTGTCTGTTACCCTTCTAAACGTTATA
ACATACGTCAAAAATCCCTTTTTATTGTTTACAAGTAAATAATCATTCTT
ATAGAATCTCAAAATATATTGTTCCTTTTCAGACTTGGCAAGATCAAAAT
GAATCGCTGAATGACCTTCCGCCACCTTACGAAGAAGCCGTTGCTGAGGC
AGACAAGGTCTGAACGATAAATGCTAAAAACCAATAAAGACTTGGAGGAA
ATAACTCAGTAAATATTCTGATCTCAAAAATGAAAGCATGATAATGATTT
ATTTTTAAAACTATTTCTTAAATGTGGTTAAAGCCTTCAGTTGGATCTTA
GTTTAATTTTTCTAATGATGGAGTTGATTGTAAAGTCAATTTAGAATTTT
TTTACGGTTTTACAGTATATTTACAGTTTTTCTTTACGATTTAAGAATAA
ACTTAAAACATTTCTTTACGATTCAAAATAAATAAACAACACAAAAATTT
GATTTTATTCAAACAAAGCTTTTCGAGTCTTAACTGCTCATCATCAGGTT
AAAAATGACATTTCTAGG

Coding sequence (CDS) from alignment at sc0000613:174383..177900-

>TCONS_00027301 ID=TCONS_00027301|Name=TCONS_00027301|organism=Clytia hemisphaerica|type=CDS|length=2241bp|location=Sequence derived from alignment at sc0000613:174383..177900- (Clytia hemisphaerica)
AGTAATAGTATCAGGGATGAAGTCTCTTAGTGGTGTCATCACATCACCCG
AATGGCCTATTGGTTTCCACCGACATTACCCAACGTCATGTCTTTGGAGA
ATCAAAGCACAAAAAGGATTTGTNCATTGGTTTCCGCCGACATTACCCAA
CGTCATGTCTTTGGAGAATCAAAGCACAAAAAGGATTTGTCATTCAATTA
AATTTGGTGTTTACTGGCAAAGTATTTGAATGTTCAGAGCCAAGAGAATA
CGGTCCGTTTTGCGGACGAGTTCGACCGAACAATTTCTTCACTTTAGAGG
GTTGTATAGTGATCAAAGTCGACCAGGTCGGTAAAAAAGATGAGAGAAGA
AAATACCCTAAAATTCGATTCATGTTCGATCATTTAAACGAATTGGATAT
TGTGAAAGGATCCAGAATACTTCCGTGTCGCGAAGAAGGATGAAGCACTT
TCCGTCTAGTACATTACTACTGCTGTTAGTGTTAACACAAATCGATATAA
TCTCAAGTTCACCCTTGTGTTACAATGGAACAGAGTCCTCTTGTTGTCAA
ACAGTTGATGAATTTTGTCGCCACTATGATATCGATCCTGGTAAAGACAT
TTACACATTCAACAAGGCTGATATAGAATACTACAGGATTGCAAAGCCTC
TGAAATATGGGATGGTGATACGATTAAGGTGGATTGACGTCGAAATGTCT
GGGGAGATGAGAAGCTGCGAAGAGGGCACCATTACTGTTTTTGTTGGAGT
AATAGTATCAGGGATGAAGTCTCTTAGTGGTGTCATCACATCACCCGAAT
GGCCTATTGGTTTCCACCGACATTACCCAACGTCATGTCTTTGGAGAATC
AAAGCACAAAAAGGATTTGTNCATTGGTTTCCGCCGACATTACCCAACGT
CATGTCTTTGGAGAATCAAAGCACAAAAAGGATTTGTCATTCAATTAAAT
TTGGTGTTTACTGGCAAAGTATTTGAATGTTCAGAGCCAAGAGAATACGG
TCCGTTTTGCGGACGAGTTCGACCGAACAATTTCTTCACTTTAGAGGGTT
GTATAGTGATCAAAGTCGACCAGGTCGGTAAAAAAGATGAGAGAAGAAAA
TACCCTAAAATTCGATTCATGTTCGATCATTTAAACGAATTGGATATTGT
GAAAGGATCCAGAATACTTCCGTGTCGCGAAGAAGGATGAAGCACTTTCC
GTCTAGTACATTACTACTGCTGTTAGTGTTAACACAAATCGATATAATCT
CAAGTTCACCCTTGTGTTACAATGGAACAGAGTCCTCTTGTTGTCAAACA
GTTGATGAATTTTGTCGCCACTATGATATCGATCCTGGTAAAGACATTTA
CACATTCAACAAGGCTGATATAGAATACTACAGGATTGCAAAGCCTCTGA
AATATGGGATGGTGATACGATTAAGGTGGATTGACGTCGAAATGTCTGGG
GAGATGAGAAGCTGCGAAGAGGGCACCATTACTGTTTTTGTTGGAGTAAT
AGTATCAGGGATGAAGTCTCTTAGTGGTGTCATCACATCACCCGAATGGC
CTATTGGTTTCCACCGACATTACCCAACGTCATGTCTTTGGAGAATCAAA
GCACAAAAAGGATTTGTNCATTGGTTTCCGCCGACATTACCCAACGTCAT
GTCTTTGGAGAATCAAAGCACAAAAAGGATTTGTCATTCAATTAAATTTG
GTGTTTACTGGCAAAGTATTTGAATGTTCAGAGCCAAGAGAATACGGTCC
GTTTTGCGGACGAGTTCGACCGAACAATTTCTTCACTTTAGAGGGTTGTA
TAGTGATCAAAGTCGACCAGGTCGGTAAAAAAGATGAGAGAAGAAAATAC
CCTAAAATTCGATTCATGTTCGATCATTTAAACGAATTGGATATTGTGAA
AGGATCCAGAATACTTCCGTGTCGCGAAGAAGGATGAAGCACTTTCCGTC
TAGTACATTACTACTGCTGTTAGTGTTAACACAAATCGATATAATCTCAA
GTTCACCCTTGTGTTACAATGGAACAGAGTCCTCTTGTTGTCAAACAGTT
GATGAATTTTGTCGCCACTATGATATCGATCCTGGTAAAGACATTTACAC
ATTCAACAAGGCTGATATAGAATACTACAGGATTGCAAAGCCTCTGAAAT
ATGGGATGGTGATACGATTAAGGTGGATTGACGTCGAAATGTCTGGGGAG
ATGAGAAGCTGCGAAGAGGGCACCATTACTGTTTTTGTTGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015365	XLOC_015365	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00027301-protein	TCONS_00027301-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000613	supercontig	sc0000613:174383..177900 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.172222	8.98242e-06	0.203047	0.275816	0.197427	1.92287e-05	0.332128	0.371864	0.369509	2.1284	0.548139	1.62315e-05	14.1257	11.7699	8.94756	11.3287	0.985927	2.65327	0.160191	0.13504	8.30438e-07	0	7.20037e-06	2.13158e-06	5.00039e-06	2.63308e-07	1.32381e-06	0	4.59888e-06	1.03383e-05

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000859	CUB_dom

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00027301 vs. Swiss-Prot (Human)

BLAST of TCONS_00027301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00027301 (transcript) - C. hemisphaerica