TCONS_00027307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027307
Unique NameTCONS_00027307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027307 ID=TCONS_00027307|Name=TCONS_00027307|organism=Clytia hemisphaerica|type=transcript|length=408bp
AGCCGGTTATTTTCTAGAAGAATTTTAAAATATGAAAGTCAGTTAAATCA
TTGGATAAAGAGATTTCGAAGATTGTTTGCAAAAAGGATTTCATCATCGT
CATTATACTGTAGAGTGTGAATCACTGCTAGGATCGTCGATTTGTGTTTC
AGCTTCACAGTGTATCGTTTTCTTGGGCACTGGGTACGAAGGTGGTTGTT
GTGAAGGTTCAAAACGTGGAGCGTGCGCGTTGTGTTCCTTTTTTTGCAGC
GGTGGCTCTTGCTTGTTAATGTTTTGTTGCGGTGGCGGTGGCTCTTGCTG
GTTGATGTTTTGTTGCGGTGGCTTTTGCTGGTTGATGTTTTGTTGCGGTG
GCTCTTGTTGGTTAATATTTTGTAACGATGGTTCTTGCTGGTTGATGTTT
TGTTGCGG
Run BLAST on NCBI

transcript from alignment at sc0000613:147740..148147

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027307 ID=TCONS_00027307|Name=TCONS_00027307|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at sc0000613:147740..148147 (Clytia hemisphaerica)
CCGCAACAAAACATCAACCAGCAAGAACCATCGTTACAAAATATTAACCA
ACAAGAGCCACCGCAACAAAACATCAACCAGCAAAAGCCACCGCAACAAA
ACATCAACCAGCAAGAGCCACCGCCACCGCAACAAAACATTAACAAGCAA
GAGCCACCGCTGCAAAAAAAGGAACACAACGCGCACGCTCCACGTTTTGA
ACCTTCACAACAACCACCTTCGTACCCAGTGCCCAAGAAAACGATACACT
GTGAAGCTGAAACACAAATCGACGATCCTAGCAGTGATTCACACTCTACA
GTATAATGACGATGATGAAATCCTTTTTGCAAACAATCTTCGAAATCTCT
TTATCCAATGATTTAACTGACTTTCATATTTTAAAATTCTTCTAGAAAAT
AACCGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015369XLOC_015369Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027307-exon-sc0000613-1491911889:147740..148147TCONS_00027307-exon-sc0000613-1491911889:147740..148147Clytia hemisphaericaexon
TCONS_00027307-exon-sc0000613-1510915933:147740..148147TCONS_00027307-exon-sc0000613-1510915933:147740..148147Clytia hemisphaericaexon
TCONS_00027307-exon-sc0000613-1575043694:147740..148147TCONS_00027307-exon-sc0000613-1575043694:147740..148147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000613supercontigsc0000613:147740..148147 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.22073	0.253509	0.0984512	0.100235	0.200369	0.199427	1.047	1.54889	1.62881	1.01265	11.7177	17.172	7.42103	14.0513	1.2088	2.92193e-09	9.43732	5.34072	1.62612	2.38144	1.10419	0	2.59695	2.39183	0.186716	0.106834	1.36811	1.17003
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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