TCONS_00027314 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027314
Unique Name	TCONS_00027314
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1842

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000616:73515..76357+

transcript sequence

>TCONS_00027314 ID=TCONS_00027314|Name=TCONS_00027314|organism=Clytia hemisphaerica|type=transcript|length=1842bp
CGGATCAAGAACTCGTTTCAATAAACGTGATGGGTCACCGGCACCTAATG
CTTATACCGTACCTCCCATTTTCGGCTCCAAAACGCCCACTAAACGTTCG
CCACCCGCTTATGTAATGACGGGTCGAGGGCGTGTGGGTGGATTCAGTGA
AGACTTGAGTAAGACACCTGGGCCGGGGACTTATAAAGTGAACGATCCAA
ATTCATGGAAACATCGGGCGCCAAGCTACTCAATCAGTGGTCGATTTATG
ATGCCTGGTGATTCAACACAAAAGCCTGGACCTGCGCATTACAGTCCTCA
TAAGCAAAGATCCGGAACTGGTCCATCTTTTGGTGTACGGCATTCAGAAT
ATACCGCACCTGTTCTTTTCTCTACATGCTGATTGGTTGTCGCCTGCAAT
TTGATtggatttgaaaatgttttatctGCAAGCTGATTGGTTAAAGATGT
TGACAATGCgaactgattggttgaaaatatTAACTATGCAAGCTGATTGG
TTAAAGATGTTGACAATGCgaactgattggttgaaaatatTAACTATGCA
AGCTGATTGGTTTGTTTAAAGTGTTATTTGTGGATGGGAAGTTCTGATTA
AATTACATTCCAGAGATAAATTGAAGTGTGCTTTCATGGTTCTTTGTTGT
GTGCTTTTTagtttgattttaaataaaTAGTTTTTATCCACTCTGTCTTA
GTAATATACTAATTCATAGATACTTTGATTAACTGCTCTGTTCTTTTGTG
CTTACTTGTAGTGGAAGGGGCTATACTGGATTTTTTATGCTGTTACTCat
tccccagctggcacacaacgtcttGTACACGCTGGGTCTGAAACAGTTTA
AATATTTGACGAATCGAAAGCGAAAGTATAACTTTAGAAATAACTTTCTT
TTTCCGCAATCCCTTATTCCTAGTTCCTTATGACCCTTCCCTCACTACAC
TCAAGCACCAGAGATCTCCATGTAGGGTAAGTATATCTTTTACTTTCGAC
TATTTTTTCTTGTCTtgtattattattttgttattctttatctaaaatca
aattttacagGAAGGCTTTACTCCaaattttataatctttttctGTAACA
TATACAactcaaatttttttaacaaattattttatttttaagtgatttat
atatttttttcttcttaacaaatttatatacacgttttttttattagaac
ccagtttataagaacattgaggctgaaattcgtcgaaaaattaataacat
cgtaagaacatgcccagcctcagtttggaaaaaaatgacgagAAACTACA
ATTCTAACTGAACTTAGAGATGAATTTCCTAAAACCGAAAGTCAagtatt
gtccaaattttaccaattttaagtgctctttattttgcatgatattgtcg
atttacagtagtctgaaaaattaagaacgcatttaagaacattttaggct
gaaaattgctaaaaaaataagcacatccaggctcagccaaNaaattaaga
acgcatttaagaacattttaggctgaaaattgctaaaaaagtaagcacat
ccaggctcagccaaattttaggtgttctgataaaaaaaacaacgtgtacc
TACTATTTTATTTCACCTAATTATTTCTTTTATGGGCGTGGTCCCTCATG
TAcgcttttcaattatttttgaacTTTCTTCTTAAAGCTGCGTAATTTGA
ATTCAAGTCTTTTTTTtatgtattattttttctaaaatttattttatttt
gttgatgGTATTGTAAAAAGAAACCTACATagtatgaattttgaaaatta
cggTGAATGCTTACATTATAATAAAAACTTGTCGAAATTTCC

Run BLAST on NCBI

transcript from alignment at sc0000616:73515..76357+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027314 ID=TCONS_00027314|Name=TCONS_00027314|organism=Clytia hemisphaerica|type=transcript|length=2843bp|location=Sequence derived from alignment at sc0000616:73515..76357+ (Clytia hemisphaerica)
CGGATCAAGAACTCGTTTCAATAAACGTGATGGGTCACCGGCACCTAATG
CTTATACCGTACCTCCCATTTTCGGCTCCAAAACGCCCACTAAACGTTCG
CCACCCGCTTATGTAATGACGGGTCGAGGGCGTGTGGGTGGATTCAGTGA
AGACTTGAGTAAGGTCAGACATCTTTGCTTATTCTTCAACCTACAAAGCA
GTCTTTCTTGAGTTAGGGAACAATTCTAGTCGAGAAGTTGCTAGTTGCTA
CTTTCGAGTTCGGAAGTTGCTAGTTTCAGTTGGTCAGACGTCTTTGGTTG
TTTGTCAATCTAATAAATAATCTTAGATTTATCCATGAGCGAATCTAATA
CGATTCTGCTCATCAAAGTTTATCCATTCCTTATTGAACAAAAAGAAGTC
TTTCGTTACGTCGCACTTCAATTATTTGAACCTTTCTATAATTGGAAATA
ATTATCAGTCCTCGCCAAGGTGGAACCCTCTCAAAATACTTCCTATCATT
TGATATCTCTAATGTTTTTCGACCAAAAGCAAATTTCGAATTAGTGACAG
TCAACTTTTTATACTCGATTGTTTAATCGTTTCAGACACCTGGGCCGGGG
ACTTATAAAGTGAACGATCCAAATTCATGGAAACATCGGGCGCCAAGCTA
CTCAATCAGTGGTCGATTTATGATGCCTGGTGATTCAACACAAAAGCCTG
GACCTGCGCATTACAGTCCTCATAAGGTAACATTTGTGTTTTGTTAATTA
CTGTTTGCTTTGTGTTGTTTCGGTCGATGTTGGTTATATTCGAGCTTAAT
TTGAGTGAAAAGAATTCATATTTTTCTATTCAAGATTGTTTTAAATAATG
AATTAATTAGTGGGTGAAAAAGAAGTAATCAATTTTATCCACTATCCTTT
GTGTTGTCGAAGTGGGCAAGATTTCATTTTTCGGACTAAGATTAAAATTA
AGACTCGCTTTTTCGGAATACCAgcgaaaagaatttttttttcaagaggt
ACGGAAAACAGCCTTCTGCCAAATGGCTGACTGAAGTTCATTTATCAAAT
ACCCGAAATGTTGATCTTTTTCTGCTGGAAAATTGCAGTGAAATCTTCAT
GAAGTCATCAGACTCATTTCGACGGACGGTATTCGTCATATAgataattt
aaaatattaaaataaaatattaaagtaTTAAAATATATACAGATACATTT
ATCATGATTTGACTTGGCCAAAAAACAAGAAGACCTACTAAAGTAAGCTT
TTTTGCTAGTGTTGATTTGATTGAAATTGTTCTATATTTCCGTTTCTCAT
TTCAGCAAAGATCCGGAACTGGTCCATCTTTTGGTGTACGGCATTCAGAA
TATACCGCACCTGTTCTTTTCTCTACATGCTGATTGGTTGTCGCCTGCAA
TTTGATtggatttgaaaatgttttatctGCAAGCTGATTGGTTAAAGATG
TTGACAATGCgaactgattggttgaaaatatTAACTATGCAAGCTGATTG
GTTAAAGATGTTGACAATGCgaactgattggttgaaaatatTAACTATGC
AAGCTGATTGGTTTGTTTAAAGTGTTATTTGTGGATGGGAAGTTCTGATT
AAATTACATTCCAGAGATAAATTGAAGTGTGCTTTCATGGTTCTTTGTTG
TGTGCTTTTTagtttgattttaaataaaTAGTTTTTATCCACTCTGTCTT
AGTAATATACTAATTCATAGATACTTTGATTAACTGCTCTGTTCTTTTGT
GCTTACTTGTAGTGGAAGGGGCTATACTGGATTTTTTATGCTGTTACTCa
ttccccagctggcacacaacgtcttGTACACGCTGGGTCTGAAACAGTTT
AAATATTTGACGAATCGAAAGCGAAAGTATAACTTTAGAAATAACTTTCT
TTTTCCGCAATCCCTTATTCCTAGTTCCTTATGACCCTTCCCTCACTACA
CTCAAGCACCAGAGATCTCCATGTAGGGTAAGTATATCTTTTACTTTCGA
CTATTTTTTCTTGTCTtgtattattattttgttattctttatctaaaatc
aaattttacagGAAGGCTTTACTCCaaattttataatctttttctGTAAC
ATATACAactcaaatttttttaacaaattattttatttttaagtgattta
tatatttttttcttcttaacaaatttatatacacgttttttttattagaa
cccagtttataagaacattgaggctgaaattcgtcgaaaaattaataaca
tcgtaagaacatgcccagcctcagtttggaaaaaaatgacgagAAACTAC
AATTCTAACTGAACTTAGAGATGAATTTCCTAAAACCGAAAGTCAagtat
tgtccaaattttaccaattttaagtgctctttattttgcatgatattgtc
gatttacagtagtctgaaaaattaagaacgcatttaagaacattttaggc
tgaaaattgctaaaaaaataagcacatccaggctcagccaaNaaattaag
aacgcatttaagaacattttaggctgaaaattgctaaaaaagtaagcaca
tccaggctcagccaaattttaggtgttctgataaaaaaaacaacgtgtac
cTACTATTTTATTTCACCTAATTATTTCTTTTATGGGCGTGGTCCCTCAT
GTAcgcttttcaattatttttgaacTTTCTTCTTAAAGCTGCGTAATTTG
AATTCAAGTCTTTTTTTtatgtattattttttctaaaatttattttattt
tgttgatgGTATTGTAAAAAGAAACCTACATagtatgaattttgaaaatt
acggTGAATGCTTACATTATAATAAAAACTTGTCGAAATTTCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015374	XLOC_015374	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00027314-exon-sc0000616-1491911889:73515..73677	TCONS_00027314-exon-sc0000616-1491911889:73515..73677	Clytia hemisphaerica	exon
TCONS_00027314-exon-sc0000616-1510915933:73515..73677	TCONS_00027314-exon-sc0000616-1510915933:73515..73677	Clytia hemisphaerica	exon
TCONS_00027314-exon-sc0000616-1575043694:73515..73677	TCONS_00027314-exon-sc0000616-1575043694:73515..73677	Clytia hemisphaerica	exon
TCONS_00027314-exon-sc0000616-1491911889:74100..74240	TCONS_00027314-exon-sc0000616-1491911889:74100..74240	Clytia hemisphaerica	exon
TCONS_00027314-exon-sc0000616-1510915933:74100..74240	TCONS_00027314-exon-sc0000616-1510915933:74100..74240	Clytia hemisphaerica	exon
TCONS_00027314-exon-sc0000616-1575043694:74100..74240	TCONS_00027314-exon-sc0000616-1575043694:74100..74240	Clytia hemisphaerica	exon
TCONS_00027314-exon-sc0000616-1491911889:74820..76357	TCONS_00027314-exon-sc0000616-1491911889:74820..76357	Clytia hemisphaerica	exon
TCONS_00027314-exon-sc0000616-1510915933:74820..76357	TCONS_00027314-exon-sc0000616-1510915933:74820..76357	Clytia hemisphaerica	exon
TCONS_00027314-exon-sc0000616-1575043694:74820..76357	TCONS_00027314-exon-sc0000616-1575043694:74820..76357	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000616	supercontig	sc0000616:73515..76357 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.138648	0.261819	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.354216	0	0	0	0	0	0	0.214284	0	0

Blast

[Close]

BLAST of TCONS_00027314 vs. Swiss-Prot (Human)
Match: ODF3B (Outer dense fiber protein 3B OS=Homo sapiens GN=ODF3B PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.974e-24
Identity = 54/111 (48.65%), Postives = 70/111 (63.06%), Query Frame = 2

Query:   35 SPAPNAYTVPPIFGSKTPTKRSPPAYVMTGRGRVGGFSEDLSKTPGPGTYKVNDPNSWKHRAPSYSISGRFMMPGDSTQKPGPAHYSPHKQRSGTGPSFGVRHSEYTAPVL 367
            SP P AYTVP + G +   K S P   + GR   G F EDLSKTPGP  Y+V  P  +K RAP ++I  R  +P D+T+KPGPA Y+  + R   G SFG+RHS+Y AP++
Sbjct:  138 SPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGPCAYQVVSPGVYKSRAPQFTILARTSLPQDNTRKPGPAAYNVDQHRKPRGWSFGIRHSDYLAPLV 248

The following BLAST results are available for this feature:

BLAST of TCONS_00027314 vs. Swiss-Prot (Human)

BLAST of TCONS_00027314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ODF3B	7.974e-24	48.65	Outer dense fiber protein 3B OS=Homo sapiens GN=OD...	[more]

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TCONS_00027314 (transcript) - C. hemisphaerica