TCONS_00027324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027324
Unique NameTCONS_00027324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027324 ID=TCONS_00027324|Name=TCONS_00027324|organism=Clytia hemisphaerica|type=transcript|length=2056bp
NGCTGGTTTCCTTCAACTGCACATGGAGGCTAAATCTTCAGTTGCAAATC
TGCCGGCAACCGGATTTTCTAATTTCCGTGTGATCAACACGGTGCCATGT
GGAATTAATGTTTATGGTGAAAATATGAAAGTCAAAAATCTATCCATCCC
ATATCACGAGGCAACAGATTACTTTGCGGTTCCCGTCAAATTCAATTCAT
TACAAGTTTCTACTACATGTTCACCAAAGATGGAGCTTTCTAAAGTTCCC
ATCTCCATACAACAACAGAAAAGTTATTCACTTGTCATTGGTACAAACCA
CAGTAAACTCATCACAGAACAGTTAACAGATGATGTTACACCTTTAAAAC
ATGGTAGTGCCAAGGTGCGTTTTGTTCATGCTGGAGGTTCAGTGGCTGAC
CAAATCAGTGTCAAATTGGGCAAAACGAAAATCAGTTTGAAACCGTTCGA
AACAGTAGAGTATCGAAAACTTGATTCAAGAGATTATAATATTCATATCA
AGGAAAATgatacccatgatgcattgggCTCGaaaaaaattcatcttgGG
AACGGTGGAATCTATACAGTCGTCATCCAACCcaataaaaatatcgataa
aTTGAAAATCTATTTATACGCGGATGTTTCACCACGACCAATCAGTATTT
TGTGGCAGGTTCCACAATATCTCATCATCACCCTCGGTGAAGTCATGTTC
TCCATCACTGGGCTTGAATTCGCCTACTCACAGTCACCACCTTCAATGAA
ATCATGTATCATGGCAGCTTGGTTGTTGACCGTTTCTATTGGCAACTTGT
TGGTCGTCATTCTAGCTGGTGTTAAACTTACTGAAGATATGgcAGAGGAA
TTCTTCTTCTTTGCAATTTTGTGTGCAGTAGTGACCGTCATTTTTGCTAT
TATGTCTTGGTTCTATAAATATGTATATTATGGTTCAGAAAGGACTGTTG
CTTCACTGGAAAATGATGAAAGCTCACCTCTGATTGGTGGAGAGGAAGAC
AGTGGGGTGGATAATGACGCCCATGAAATTGATAAGGGCGGAAAAGATGA
CGAAACTAAAATGTGAGGAACAATTTTTTAGGGGAGTCATCTTTGGAAGT
GAAATCTTTGCACCGGTCACTGATTATGTTCTGACCTTCTCATCTTTCGA
AAATCATTATCTGATGTCGATTGAAGTTTGCCAGCGTCGATGTACCAAAT
CCATCTTATTTGTCAACTAAGAACACCAAATTGATTGAGGCTAAAATTAT
GTCGAGTGTTCATCAACtgtgatttgatgttttttttatacaTTGTATTC
TGTTGCCAAAGGAATGCTTTCCAAATTCTTATGAAATGAGAACTTGTCAG
AACACTACATACACTTGTTTCTTTTACATGACACACGCACTTTCAAGGCT
TTTACCTCTATTCATCACATAATATGCAGTCCTATTACAAATTTCCTACT
GCTTATTTATCTACACTgacaaaacttatttttcaaaagatacatTTGCC
AGACCCTATTATTCGAACAGTTCGAGAATCGTACAAATTTGTGAGAAGTT
AGagaagttcgattggttcgagaAGTTCGATTTGTTCGAaaaTTTGAGTA
AGTTCGGCTGATTACTCGAACTTACTCGaacttaccttaagggaagaaat
tttcgcggaatttaattttgcggatttgttgaaattaaattccgcaaaaa
ttaaGTAGTAAGTAAGTTCGAGTAAAAGAGTGATTTGAAAAGTTTGAGTA
ATGGGGTCTgaattaataaaatcaaaattttcgaaaattgattttagtca
aattgtgtcaaatataggcatttgtgaaaatattttttttgtagagaatc
atatttatttttgctCTTAGTGGGGTTTcatactgaaaatattttcttat
tgtccctaaattatatttttgataattttggaatttattattttttaatt
gattgtATCTAACACGAgtattagttttttagtgatagTAAAATAGAAGA
ATTAGAATCAGTAATGGAGAAATTGGAGAAATGTGTCATTTTAAtgtaaa
atttaa
Run BLAST on NCBI

transcript from alignment at sc0000616:158735..170082+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027324 ID=TCONS_00027324|Name=TCONS_00027324|organism=Clytia hemisphaerica|type=transcript|length=11348bp|location=Sequence derived from alignment at sc0000616:158735..170082+ (Clytia hemisphaerica)
NGCTGGTTTCCTTCAACTGCACATGGAGGTTAGTAGCCTTTGTTTGAAAT
ACCAGTTTTTGTATTGACGCTATATAGTTCTGCTCGAATCTTTTTTAATC
CATTAGTCTGGGAGTTTTTTATGTTGAAATCCATGCAAGACGTTATTCCt
tatatgtttttttatctGAACCTTTTTCTCGTTATAGATTCACCCCTTTT
ATAGCACTTTGGGAAGACATTACTATATCAGGGACCtaattgttttcttt
gtttattcCTGCAGGCTAAATCTTCAGTTGCAAATCTGCCGGCAACCGGA
TTTTCTAATTTCCGTGTGATCAACACGGTGCCATGTGGAATTAATGTTTA
TGGTGAAAATATGAAAGTCAAAAATCTATCCATCCCATATCACGAGGTAC
TTATATTTCTAAATAGTCCTttttaaccgatgtccgtccgttcgttcgtc
cgttcgtccgttcgttcgtccgttcgtctgttcgttcgtccgtccgtctg
ttaccagcttttctcgagattggctcattagttttttctgatttttttgg
cacaatgatgcaaaatggtaatgcccaaaatgtgacggagcccgattttc
gaaaaaaaatcatttccggccgaaaatgccggaaatatgccggaaaaacc
gtttttttggcattttctcgagatttcatcattatatttttcagattttt
tgcacaaagatgcgtattagcaatgcccaaaacatggcagagtccgattt
ttgagaaaaattcttttccggccgaaaatgtcggaaatatgccggaaatc
gccgtttttgcagattttcattggactttttccttataattggttgtttt
ttcacacaaaaacatttttaatagcaaagtccacgatcaagcatggttca
attgtcaataaaactgatttttgaagccggaactttctaaaaatcgccgg
aacagccgattttcgccggaaaaacggtatttcttgaatttctcaagctt
tactttatatttttttatgaaattttgcacactgatgtaaagtgacaata
cctaaaaagtgacggagcccgattttcgaaaaacatttttttccggccga
aaatgctggaaatatgcctgaaaaactgtttttttggcattttctcgaga
ttttatcattagttttttctgattttttgctcaaagatgcgtattaatat
tgtTCAAAACATGGCTTAGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTttttgccggaaagaca
gtatttcttgaatttctcgagctgtactttatattgttttatgaaatttt
gcacactgatgcaatatgacaatacctaaaatgcgtcggagcccgatttt
agaaaaacgtttttttccggccgaaaatgccggaaatatgctggaaaaac
cggtttttttacattttctcgaattttcatcaaaagttttttctgatttt
ttgcagaaagatgcgtattcgcaatgctcaaaacatggcttcgatttttg
ataaattttttttttcggttgattatgccggaaatcgccgtttttgcaga
ttttcattagattttttccttgtatttctatgtttttcacacaaaaacat
tattgataacaatgctcactaTCAAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTATTTttcccctacaacccttccctctccccccatca
acaatcaatgatgaatttattgcgttatgcattttcgctaaacgctatat
tttttgactgatttctttctcctcgcattgctatccaactttcatcatca
cacatcaggtaggtccattcagcatctagcttgtttggTTTATGGTCTCA
ACGAaatgaaagatcgaaatttgtgGTTTGGCATTCTAATTTTATACTAT
TTTACTCAGCAGCTTTGGTTGTGTATCTTGTATAGTCTGTCTAAATATAA
TCTGTAGCAGAAACAAAGAGTTTGCGTAacctttgatagaatttgaagcA
GAGAGCAGTTTTGTGCTCATTGAGAAGATTGAGAatgttgattttgttgt
ggTTCTATTTTTGCTATTGATGATATTTCACTCTTGAATATTTTTCCAAT
GGTTActatcaaatttgaaaaaattacagACATTTTTCGTTTCTGCTGCA
GTTTATTTTGAAGCAGGCtttgaatatttcttaaaaGGGTTAAGTAAAAT
GGACAATTTTTTGGTgtgatttttcaaatcaatgattttttcaattgtgc
aaaaaaaattaaatgattattacaagataTACTGAATAAATAATGTCAGT
AATaaatttatattaaaaaatattaataataaaTAAGATAAGAAATCTCA
TAGTTCTTAACATAATTTGATCAATTCTACAATCTTTGTCCTACTAATGC
AGAAACAGATTGACGTCTAGTCGCGGCTTCAGGGAATTTAAAGAAGTTAA
TtaaaactccttttcaaacaccACGTTGAAAAGAGCATAAACTCTGGGCT
agtaatgggccattccattttataaccatacaggggggtgaacgaacttt
tccagggggtaatccaagaagaatttccaggaggTCTAAATAAGTGTTTc
gtcatttttccagggggtaaaaagctaTTCTTAaacttccagggggtaaa
tgACTGAtattagttcgtccaccctcactttaagacataaaaataatttt
ctccaGGGTCTTTTtagcaaattttgccattttccaggaggtatccacac
atttccaagaaatttgttttgacttGAAAGGTTCGTCCATCCTCCTTGTA
TGGAAActttatggaacagcccaatgttACTGTTGCtgataaattattat
tttaaaataatgatATTGTTATGAAGTCAAGTTTTGACCCGTTGAATTTG
AaccaaaaatggacaaaaacgTTAGCATGCACAATGAATTGGATGCTGAG
GACCATTGTTCCCTTGATTGCACCAAGCATCCATTCCAGAGATGTTGGAG
AACGGAGGGATAGCTTTACAATTGCCAGAAACTTTTGGTGGTGATCGGGT
AGTAGTTGTGGTGGATTTCTCTGTTGGGTTGGGTGGCATGGGTGGTGGAA
CGCCACATGCATTTTTATTTGTGCAAGTGTACACGACATTTTGACCAAGA
GCTGCTTTTTTAGCTGCATTCATCAGAGGATATTTCCCTTGTCCACAGAA
TCGTCCGCTGAAATCATCGAGATCCAAAGCCCAGAACATGTATCCTTTGA
GGTTATGTTTCTTCATCACATTCTGGATTTTGTAAACAATACTTTGCTGG
TCATCATATCCTATCCACTGATCACCAGAGCTTCCGTAAGGTGCTTTGAC
TGGACTGCTCTCTGTACAAACATGGTTCTGGAAATTCATTTGACAGATCT
CGTAATAAGCCAAGAATCCTGCTTCACCAGTGTGTGGTCCTTTGCTTCCA
AGTTTAGCTGCTGCCCCAGTGTTGATTCGACAGTTATTTTGCAATGTGAA
GCTTCGACCGTAAGAAGCAAGGCCAAGGACCAGTTTATCTGGAGATGCAC
CTTGTTTGAGCCATTGTTGGACAGTGTAATGTATATTTTCTGGTCTGGAG
TTTTCATCAGTGTTGGTGTGGTGACCAAGTCTGTTATCCCAAGAACCATA
TAAATCGTATGTCATCAGATTGATGAAATCCAAGGATTGTGAAATTTTGG
CAActtcataattttgataaacAGCGTTAGCAGCTGCTTTGACGGCAGCA
GTGACCAACAAACCTTCTCGGTGATAAGCATCAGCAAGTTCTTTACAAAG
TGAACTGAATCGTTGTCGATCTCCAGCTGGTGATCCTCTAGCTGCTGGAA
ATTCCCAATCAATGTCCAAACCATCAAATTCTAAAGCGAAATAAGAACTC
AGTTTTATACCTAAATTTGAATACTTGAAcctcttttgtgcttaaaatTC
AGCTATTACGCTCagcttgaattgttcttatttttgacgttcttatgaAA
TGTTTATCATGAAAGTACGAAAAGGAGATTGAATTCTGCATGTATTTTTG
ACTTCACGAAATCTTTTTGATAAACTATtagtcttcattttcaatgtatt
agatgtttcaaattatgtttgaaataaaaaaaagaagaatccTTACCATA
TTGTTTCACATATCGAAGAGAGTTGGTGACGAATTGAGCTCTGCTTGCTT
TGTTGGCAACCATTTCTTTGAAGCCATTTGAACCATGATTCCAACCACCG
ATCGCTAGAAGAGTTTTCAACCCTAAATCTCTCTTTTTCAAAGCTTGCAT
TTGTCTGTAAAGAACTGATTGGTCGTTCCACTCATAAGGTGCGATTGTAT
AGCCATTGCTGGAAGGAACGACTTTTCCGAAAGAGAAAATCAAGTGGGTA
CAAAGCCCATCCTGATAGTCTCTGGATAAATCATATTTGGCAAGTCCAGT
TCGATATTGTGACCAATTGGTGTAGTAGCAAACACGAATATAAGCTTGAG
TAGCCATTACCATAGCCAATAGGAGTGATAGTTTGAATATGATGGTCATC
TTTAGTTGGTGTCTGATACTTGCGCAAGATTTCTgatgtttaaaaaatct
ttagtaACGCTTAGGATTTATATATACTATAAGATCCTACCGTATACTAA
CGAGTTTTTAAAAGATGTTTGTTGCTTCTGGTCGAAGACGCTTTCTGATG
AAAAGGATGCAAATCTTCCCTTTTATACTGTTTTGTGTGACCTGACCCAA
TGATTTTTCGGTCCAAACAGGAATATCGTACTTGGAATTCTTTTGATGTT
TTACACTTTGGTTACGTGTTGGAAGTTAAGTCTGGACCAACATGTGAAAA
CGACATCATAATTGACGTTGGAGTGTGGTTTTAAACGACAATGTATACTG
GTTTCTAAGAACAGTTTTTGGAACATGGCTTTGACTGGAGCCATCATATC
CATGTCAATTAATtagtcattaaatgaaagtatCAATTTATCCAAAAACA
AATTCTTAAAGCGAATATTCTCAAACAGGGAAATAAGGGACCGAaataaa
gttcttataaagaaagggTATTTTATTGTGTCTTTCATAACCTGAGCCAA
GCTAATTAATTAATTGATGGCTAATTGCTTCCAGATAGTAAGGAGACTAA
CTACGTCATATAGAATGGTGAGGTGTGTGGTTTTTTCGATGATTAGCAAA
TCAAAGCTTGCGACTTGGCGAGATAAACTCAAACTTACTTTCAAACATTC
TAAACTCTCTAAGTAATTTCAAGGTGAAGACTTTTACAATACTTTTAgta
ttggaaaaaaaaacacgaaagtGGTAATAGAGAAAAAAACCCTTTTGTAT
TAGGAACCTTTTTACACACACTAACATATATGATGTTCTCTGCTATTCGT
ACTAAAATTAATGAAATATCTTAAGCTCTGTCTTATTTAATTAGTGGAAT
ATTATAAATAATTAATAATTATGAAATCGAACTAACTAATAGCCATAGGC
GATAATTTAAAACCAGTTTTTTCTGTTACCCACGTTTATAAGGCGTATTT
AGAGATATTCGAGAACTATCACCAGCCCTTACATATGATTTTTTACGGTT
ATTAAATCTATTTACAGGCAACAGATTACTTTGCGGTTCCCGTCAAATTC
AATTCATTACAAGTTTCTACTACATGTTCACCAAAGATGGAGCTTTCTAA
AGTTCCCATCTCCATACAACAACAGAAAAGTTATTCACTTGTCATTGGTA
CAAACCACAGTAAACTCATCACAGAACAGGTGCGTTGGTGTCATAGTTAg
gcccgagggggggggggacttaggcaaaaatggatgctggggatgtgcgg
acggtaagggtcagttgtttcacctttcaaagtctctctaagggtcacaa
aaattagaaaaaattaaattagtctctctaagaaattttttttgatttag
agtgaaaaaattgtaaattataaaaaagtgtctctaagggtagggaattt
ttcaaaaatcgaagaaaatctttaaaaaaattctctctaagggtaacctt
ttcagcaaaaatcagtctctctaagggtcgcttTCTGGAGATCCCATCCG
CACATATTCATCATCTGCCAACACCCCCCTCCCACCGGATAGTTAGGTTA
TGTTAACTTAGAGTATCTATATGGCTAAGGTGAAAAAGTtgtaaattata
aaaaagcctctctaagggtaaggaatttttcaaaaatcgaagaaaatctt
taaaaaaaattctctctaagggtaaccttttcagcaaaaatcagtctctc
taagggtcggtttttggtATATGGCTAAGGTTAGGCTGCTGACATTCAGT
TACGGATTTGTGCTCCTATACTACACGGATTTCAATTTAgacttggctaa
ggttcaactgattatgtaaaaattttcttccaaattttCTCTAAATCGGA
TTTGTGTAAATTTCGAGCAAATTTTCCAAGACCCTTCATCacattgattt
tgaaaataagttTTTCAATTGATATCAACAGCAGCCGTATCAAAAAAGCT
ATTCCTTTAGCCTGGAACTTTGGAACTTTTATCCAGTAAATGCATCTCTC
TCCGttatattttcatgatttctttACTTTAGTTAACAGATGATGTTACA
CCTTTAAAACATGGTAGTGCCAAGGTGCGTTTTGTTCATGCTGGAGGTTC
AGTGGCTGACCAAATCAGTGTCAAATTGGGCAAAACGAAAATCAGTTTGA
AACCGTTCGAAACAGTAGAGTATCGAAAACTTGATTCAAGAGATTATAAT
ATTCATATCAAGGAAAATgatacccatgatgcattgggCTCGGTAAGTGA
AACCTTTTATTATTTCATGGATCAAGTATCTTGCTAaaggacacgagaag
tttttttcgtgttggtgcaatgcaacatgcccCATCCCACCAActtgaaa
cgctttctcgtgtctccaccccttTTTTCTTTCTANTCCATCCCACCAAc
ttgaaacgctttctcgtgtctccaccccttttttctttctaccaataaaa
gtgaaatctcacttttgtcctaGGGACAAAATTAGCGTGTCTTTTGGTTA
TTTCCCTCAATTTTTGTTCcatgaaacgaaaaaagaaaccatgggaaaCT
TTCTTGTGTTGGtgggatagaaCATGTTtcattgcaccaacgcaaaaaaa
acttctcgtgtcccaaGCTATAAGAGAAGCTATTTAAAAAAGTGTTACTT
ATTTATTTTGAGGAATCCCTTTTAACTCGTATTACAAACACTATCAGCTT
TTCAAAGTTCGAAATTACCCCCTATCATCCTTTCCAAACCGTTGTTGGCC
AATTGCCTTCAGTATTTCCCTGTATTTGATTAGACACTTGGTTGGTAAGA
TTTTACTTCgatttgaagatttttattgAAGAAAGATTCCCTTTACAAAA
TATTCATGACAgtatcaaaacaatggaatttataCAACTGGTTCATGACA
CCCTGacctttttaaaagaaaaatcattaccTCGTCCTCGCCTGATATCT
TCAGTTGAAAAAGTTTGTCGAAAAACATTACTGTGACCTCCAGCCTTATT
TTCAACAAGGCAATATTTCATGCGCTTTAAAttacttttttctattttgg
ttatttataagaatttacTAGTTTTTTTTGGGCCAATCAGaaggtttgag
atatttgagaAAACTTTCTGTGGTCCTGAGTAAAACCTTGAAGTATTTTT
TCCAACTATTTTCCAACGTCGagatatcacaatttgaaaCTTCTTAAAAT
TGGTTAAATGATCCCAGGTTTGGACGCTTAAGCGATCAGATAGATTATTT
AAAATTTCGTATTAATAACAATAaatcaaatctttaaaaatgcctatttC
GATAACGTAAAATTAgggtgaaaaaatttaaaatgtctaaTCTGACCGAT
GGGCAAGTTTTATTCAATCTGAATCAATGATTACATATTCGGTGTTATGA
CTTATTGTCACCATatttacaatttcattttcagaaaaaaattcatcttg
GGAACGGTGGAATCTATACAGTCGTCATCCAACCcaataaaaatatcgat
aaagtaAGTTCTCCATTCTACATGGCTTCTATTTCAAATTGTATTTTACT
GACCCTGCCTGACAACTGAATTAGATATTAGACCATTACagaaaaaatca
tattttgtaTTAGGTATGTTAATGAGGTCCTTTCTTTGGGAAGCTTCTGA
ACATAGAGTAAGTTTTGTGACCCTTCCCTGAAGCAGTGCCCATAGTTTGA
CTTgatttatttggcttaaaatttcCTGAATAttttaatatctttaaaaa
gtTAAAGTTTCTGATTCATGGATATTTTAATCCGCTAAAATCTGTATCTG
TATTCTTCTTTTCAATTATCGATTTCAACCTAGTCTTTGCTATACCATGT
ACAATTCCCTTCCAGTTGAAAATCTATTTATACGCGGATGTTTCACCACG
ACCAATCAGTATTTTGTGGCAGGTTCCACAATATCTCATCATCACCCTCG
GTGAAGTCATGTTCTCCATCACTGGGCTTGAATTCGCCTACTCACAGGTA
TTTCGCCACTTTCAATTACACGTTTTTAgaaataagttggagatttgata
tttcacagaaaagtgctaccaaggggtatttcgggtcccatatcttccga
aggacttttttgttcgccttgaaatttNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgattct
ctaaaacaaacaaaaaaaatttccataattatatttgactatcaaaagtt
acaagcatttttgtttccactgccaattatatctggacagactttaagtt
cattatttttcattcatcCAGTCGTGTTTTCTGATTTAGcgttttaatat
attttttgacctttttacATGAAAAAATGATCCCAAAGTGTCATAAAGTA
CAtcttgtttttcaatttctatttaGTCACCACCTTCAATGAAATCATGT
ATCATGGCAGCTTGGTTGTTGACCGTTTCTATTGGCAACTTGTTGGTCGT
CATTCTAGCTGGTGTTAAACTTACTGAAGATATGGTAGGTGTTGTTTAGA
atcatttcaactttttgtcatCTAAGAATGCTAGGATGAGATTGAGGAGT
TAGTCGAAAACTAAATATCCTATTAGTCCTTATGGACACTTATGTGGTTT
CTTTTGGGCTAGTGGTCGATCAAGTGCTGTTTTctatcaaattttcaaac
ttacGGATTATGCTTGACGGAACGAAACTGCATTTTTCCACCAGGTCCTt
ctccaaattcaacaaaaaaaatttaaaagagtttCTTTTCCCAAAGTAAT
TTTGCTAGGGACTAAAAAATTGTTCAGTAACGGCTTTAatcctttctttc
tttctttttttaggcAGAGGAATTCTTCTTCTTTGCAATTTTGTGTGCAG
TAGTGACCGTCATTTTTGCTATTATGTCTTGGTTCTATAAATATGTATAT
TATGGTTCAGAAAGGACTGTTGCTTCACTGGAAAATGATGAAAGCTCACC
TCTGATTGGTGGAGAGGAAGACAGTGGGGTGGATAATGACGCCCATGAAA
TTGATAAGGGCGGAAAAGATGACGAAACTAAAATGTGAGGAACAATTTTT
TAGGGGAGTCATCTTTGGAAGTGAAATCTTTGCACCGGTCACTGATTATG
TTCTGACCTTCTCATCTTTCGAAAATCATTATCTGATGTCGATTGAAGTT
TGCCAGCGTCGATGTACCAAATCCATCTTATTTGTCAACTAAGAACACCA
AATTGATTGAGGCTAAAATTATGTCGAGTGTTCATCAACtgtgatttgat
gttttttttatacaTTGTATTCTGTTGCCAAAGGAATGCTTTCCAAATTC
TTATGAAATGAGAACTTGTCAGAACACTACATACACTTGTTTCTTTTACA
TGACACACGCACTTTCAAGGCTTTTACCTCTATTCATCACATAATATGCA
GTCCTATTACAAATTTCCTACTGCTTATTTATCTACACTgacaaaactta
tttttcaaaagatacatTTGCCAGACCCTATTATTCGAACAGTTCGAGAA
TCGTACAAATTTGTGAGAAGTTAGagaagttcgattggttcgagaAGTTC
GATTTGTTCGAaaagtttgattgattgattttgaccaaattttcttctat
ttcggagcaaaaagaaatcaagtttTCCTATTTTATGATATGGTACCCAA
TGGTTGAACTAGAATTGGCAGATTCtcaattttcaaacttactCGAACTT
TACTCGAACTGTTAACATAACTTAGAATACAAAGTTTGAGTAAGTTCGGC
TGATTACTCGAACTTACTCGaacttaccttaagggaagaaattttcgcgg
aatttaattttgcggatttgttgaaattaaattccgcaaaaattaaGTAG
TAAGTAAGTTCGAGTAAAAGAGTGATTTGAAAAGTTTGAGTAATGGGGTC
Tgaattaataaaatcaaaattttcgaaaattgattttagtcaaattgtgt
caaatataggcatttgtgaaaatattttttttgtagagaatcatatttat
ttttgctCTTAGTGGGGTTTcatactgaaaatattttcttattgtcccta
aattatatttttgataattttggaatttattattttttaattgattgtAT
CTAACACGAgtattagttttttagtgatagTAAAATAGAAGAATTAGAAT
CAGTAATGGAGAAATTGGAGAAATGTGTCATTTTAAtgtaaaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015378XLOC_015378Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027324-exon-sc0000616-1491911889:158735..158762TCONS_00027324-exon-sc0000616-1491911889:158735..158762Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1510915933:158735..158762TCONS_00027324-exon-sc0000616-1510915933:158735..158762Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1575043694:158735..158762TCONS_00027324-exon-sc0000616-1575043694:158735..158762Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1491911889:158999..159130TCONS_00027324-exon-sc0000616-1491911889:158999..159130Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1510915933:158999..159130TCONS_00027324-exon-sc0000616-1510915933:158999..159130Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1575043694:158999..159130TCONS_00027324-exon-sc0000616-1575043694:158999..159130Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1491911889:164652..164813TCONS_00027324-exon-sc0000616-1491911889:164652..164813Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1510915933:164652..164813TCONS_00027324-exon-sc0000616-1510915933:164652..164813Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1575043694:164652..164813TCONS_00027324-exon-sc0000616-1575043694:164652..164813Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1491911889:165667..165876TCONS_00027324-exon-sc0000616-1491911889:165667..165876Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1510915933:165667..165876TCONS_00027324-exon-sc0000616-1510915933:165667..165876Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1575043694:165667..165876TCONS_00027324-exon-sc0000616-1575043694:165667..165876Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1491911889:167069..167137TCONS_00027324-exon-sc0000616-1491911889:167069..167137Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1510915933:167069..167137TCONS_00027324-exon-sc0000616-1510915933:167069..167137Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1575043694:167069..167137TCONS_00027324-exon-sc0000616-1575043694:167069..167137Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1491911889:167500..167631TCONS_00027324-exon-sc0000616-1491911889:167500..167631Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1510915933:167500..167631TCONS_00027324-exon-sc0000616-1510915933:167500..167631Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1575043694:167500..167631TCONS_00027324-exon-sc0000616-1575043694:167500..167631Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1491911889:168261..168368TCONS_00027324-exon-sc0000616-1491911889:168261..168368Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1510915933:168261..168368TCONS_00027324-exon-sc0000616-1510915933:168261..168368Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1575043694:168261..168368TCONS_00027324-exon-sc0000616-1575043694:168261..168368Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1491911889:168698..169448TCONS_00027324-exon-sc0000616-1491911889:168698..169448Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1510915933:168698..169448TCONS_00027324-exon-sc0000616-1510915933:168698..169448Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1575043694:168698..169448TCONS_00027324-exon-sc0000616-1575043694:168698..169448Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1491911889:169619..170082TCONS_00027324-exon-sc0000616-1491911889:169619..170082Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1510915933:169619..170082TCONS_00027324-exon-sc0000616-1510915933:169619..170082Clytia hemisphaericaexon
TCONS_00027324-exon-sc0000616-1575043694:169619..170082TCONS_00027324-exon-sc0000616-1575043694:169619..170082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000616supercontigsc0000616:158735..170082 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.538246	0.651385	0.40712	0.290471	0	7.80772e-08	0	0.0018948	1.79442	1.47134	0.399085	0.623161	0.958564	0.863797	1.47863	2.50654	1.7285	2.13497	2.16332	2.66045	1.49105	1.20695	2.5437	1.54107	0	0	1.28929	0	0.848834	0.612429
Blast
[Close]
BLAST of TCONS_00027324 vs. Swiss-Prot (Human)
Match: S15A2 (Solute carrier family 15 member 2 OS=Homo sapiens GN=SLC15A2 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.210e-31
Identity = 76/225 (33.78%), Postives = 129/225 (57.33%), Query Frame = 2 
Query:  254 SIQQQKSYSLVIGTNHSKLITEQLTDDVTPLKHGSAKVRFVHAGGSVADQISVKLGKTKISL---KPFETVEYRKLDSRDY-NIHIKENDTHDALGSKKIHLGNGGIYTVVIQPNKNIDKLKIYLYADVSPRPISILWQVPQYLIITLGEVMFSITGLEFAYSQSPPSMKSCIMAAWLLTVSIGNLLVVILAGVKLTEDMAEEFFFFAILCAVVTVIFAIMSWFY 916
            S+Q++  YSLVI  + + + +  + D  +   +G   VRFV+   ++   +++ L  T  SL   + +    YR +   +Y  +H +  D + +L    +  G   ++ +    N+ +   KI    D+    +SI WQ+PQY ++T GEVMFS+TGLEF+YSQ+P SMKS + AAWLLT+++GN++V+++A        A EF  F+ L  V+ +IF+IM ++Y
Sbjct:  480 SVQEKNWYSLVIREDGNSISSMMVKDTESRTTNGMTTVRFVN---TLHKDVNISL-STDTSLNVGEDYGVSAYRTVQRGEYPAVHCRTEDKNFSLNLGLLDFGAAYLFVITNNTNQGLQAWKI---EDIPANKMSIAWQLPQYALVTAGEVMFSVTGLEFSYSQAPSSMKSVLQAAWLLTIAVGNIIVLVVAQFSGLVQWA-EFILFSCLLLVICLIFSIMGYYY 696
The following BLAST results are available for this feature:
BLAST of TCONS_00027324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S15A25.210e-3133.78Solute carrier family 15 member 2 OS=Homo sapiens ... [more]
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