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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027341 ID=TCONS_00027341|Name=TCONS_00027341|organism=Clytia hemisphaerica|type=transcript|length=2915bpRun BLAST on NCBI protein sequence of TCONS_00027341-protein >TCONS_00027341-protein ID=TCONS_00027341-protein|Name=TCONS_00027341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=714bp MFKTALTLLTLIHVYESLTLARISPLIRQRFGFHKEKPKQENLFGKRDNSRun BLAST on NCBI transcript from alignment at sc0000616:85954..95600- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027341 ID=TCONS_00027341|Name=TCONS_00027341|organism=Clytia hemisphaerica|type=transcript|length=9647bp|location=Sequence derived from alignment at sc0000616:85954..95600- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000616:85954..95600- >TCONS_00027341 ID=TCONS_00027341|Name=TCONS_00027341|organism=Clytia hemisphaerica|type=CDS|length=21450bp|location=Sequence derived from alignment at sc0000616:85954..95600- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027341 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4) HSP 1 Score: 161.77 bits (408), Expect = 2.797e-42 Identity = 85/227 (37.44%), Postives = 131/227 (57.71%), Query Frame = 2
Query: 440 FLEGDIRRTNTVEKLQSGTVSEKREVKDSLKWPVTKDKDGSSIVVIPYKISDDLKDRARFALQQAIQDYKKFTCIRFIQREKDEKDYVKFVKERGCWSYLGRTGGKQKLSIARKCEYKG--TLLHELMHTLGFFHEHTRPDRDRHVKINFDNIRFGMELNFQKYDHKTVSDFKAPYDLYSIMHYNQYSFSDERGKLKTIVPKNIPPSRIGQRVGFSKTDLEQINHAY 1114
+EGDI R + L + S KWP+ GS +V +P+ +S + +R + +A+ ++++ TCIRF+ + D++D++ + GC+S +GR+GG Q +S+A C KG +LHELMH LGF+HEHTR DRDR++++N++ I G E+NF K S+ PYD S+MHY + +FS R L TI P P IGQR S +D+ ++ Y
Sbjct: 73 LIEGDIIRPSPFRLLSA----------TSNKWPM----GGSGVVEVPFLLSSKYDEPSRQVILEALAEFERSTCIRFVTYQ-DQRDFISIIPMYGCFSSVGRSGGMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFIKSQS---SNMLTPYDYSSVMHYGRLAFS--RRGLPTITPLWAPSVHIGQRWNLSASDITRVLKLY 279 The following BLAST results are available for this feature:
BLAST of TCONS_00027341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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