TCONS_00027360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027360
Unique NameTCONS_00027360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027360 ID=TCONS_00027360|Name=TCONS_00027360|organism=Clytia hemisphaerica|type=transcript|length=749bp
GTTCCGTAAAAGCCGTCGTTCGCGAGCTGTGATAAGAGTTTATGAGCATA
TCTTCGGTTTGGACGTGGTTTCTGATCAATGGGTTGGGTATTGTTGCTTT
ATCATCAAAAGGATAAGTGTACACCTGGACCATATCACAAATTTGTCTTC
GAAATTCGAATGTTGGTAAGTGGAGTATTTTACGTCTCTCGCTATAAGAG
TCGTCTTTGAACTTCCACACGCAAATTGACGTGTTTGCGAGATGAGGTCG
ATCAAAGGTAGTTTACATATGTCTACGGAGGATCTCTGGAGTTAAGTTGG
TGAAATCTTGTTTAACTAAACCGAACTTAGAGTTGACAAAACTGCCAAGC
CATGCCCACGTCATGCCCATGCGAAGCCTCCAATGCTCAAATAAAACCCC
TTCAGCCATTGTCTTCTTCATTTACCTTGAAAGAGACCAAATGGTTTCTT
TGTATCCACACACGTGAGCCTTTCTTTATCATATCTTTGGTTATGAAGAT
GTCAGCAATATCATGCTCTGTTCTGCGTTGGAAACCAGGAAGATCTTCTT
ATGACAAAACACTACAGAATTGTTTTTGCAGGTTGTTTGCTTTCTCATGA
TCTCCGTGTCGAAATGACGACTTGTCGGTGAGTGAAGATATGTCGCAGTT
TTCATCGTACTTTTTAAAAGCCCTTATGTTTAGCACTTATGCAAATGGAA
ATAGAGCGCTAATGAGGATGAAAGCCCTTATATTTTACACCGAGTTGAT
Run BLAST on NCBI

transcript from alignment at sc0000616:101167..101915

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027360 ID=TCONS_00027360|Name=TCONS_00027360|organism=Clytia hemisphaerica|type=transcript|length=749bp|location=Sequence derived from alignment at sc0000616:101167..101915 (Clytia hemisphaerica)
ATCAACTCGGTGTAAAATATAAGGGCTTTCATCCTCATTAGCGCTCTATT
TCCATTTGCATAAGTGCTAAACATAAGGGCTTTTAAAAAGTACGATGAAA
ACTGCGACATATCTTCACTCACCGACAAGTCGTCATTTCGACACGGAGAT
CATGAGAAAGCAAACAACCTGCAAAAACAATTCTGTAGTGTTTTGTCATA
AGAAGATCTTCCTGGTTTCCAACGCAGAACAGAGCATGATATTGCTGACA
TCTTCATAACCAAAGATATGATAAAGAAAGGCTCACGTGTGTGGATACAA
AGAAACCATTTGGTCTCTTTCAAGGTAAATGAAGAAGACAATGGCTGAAG
GGGTTTTATTTGAGCATTGGAGGCTTCGCATGGGCATGACGTGGGCATGG
CTTGGCAGTTTTGTCAACTCTAAGTTCGGTTTAGTTAAACAAGATTTCAC
CAACTTAACTCCAGAGATCCTCCGTAGACATATGTAAACTACCTTTGATC
GACCTCATCTCGCAAACACGTCAATTTGCGTGTGGAAGTTCAAAGACGAC
TCTTATAGCGAGAGACGTAAAATACTCCACTTACCAACATTCGAATTTCG
AAGACAAATTTGTGATATGGTCCAGGTGTACACTTATCCTTTTGATGATA
AAGCAACAATACCCAACCCATTGATCAGAAACCACGTCCAAACCGAAGAT
ATGCTCATAAACTCTTATCACAGCTCGCGAACGACGGCTTTTACGGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015395XLOC_015395Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027360-exon-sc0000616-1491911889:101167..101915TCONS_00027360-exon-sc0000616-1491911889:101167..101915Clytia hemisphaericaexon
TCONS_00027360-exon-sc0000616-1510915933:101167..101915TCONS_00027360-exon-sc0000616-1510915933:101167..101915Clytia hemisphaericaexon
TCONS_00027360-exon-sc0000616-1575043694:101167..101915TCONS_00027360-exon-sc0000616-1575043694:101167..101915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000616supercontigsc0000616:101167..101915 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.262798	0.192202	0.148777	0.654997	0.531597	0.350062	0.506803	0.711694	0.830456	0.342885	0.0665624	0.306289	0.524336	1.04368	0.335757	0.640567	0.887767	0.404414	0.41904	0.511578	0.508176	0.464757	0.15066	0.821828	0.846464	0.755449	0.180174	0.28843	0.0729213	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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