TCONS_00027370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027370
Unique NameTCONS_00027370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027370 ID=TCONS_00027370|Name=TCONS_00027370|organism=Clytia hemisphaerica|type=transcript|length=1691bp
TGATCGCATCATCAGtaaattgaaacaaaataaacgTCCCTTGATGCTCT
CTAATCCTTCCTTCGACTTTAAAAGGAAGGAACATGTCCAAGACAGAACA
ATTCAACCGAGGCACCTTCGAAGTAATAAGATCAGAGAAGAAATATCAGG
AGCCAAGCCCTGAAAATTGCAAGCAGAAGAAAACTTGACAACCTTTAACA
TCATTGGAACAACAAGTCATTTTCATATAAAAGAACCTGATAAATCAAAA
GTGCTAACAAAGGTATAAAGAAGTAGCTGCAGCTGAGATGTTGATTTACA
TTGCAACGGTCTTCCTGCTTCTTTCACAAAATGGCATAGATGCAAAGACT
CTCCCGACATTTCAATCAACCACAGCTGGACAACCATCTGCCCCAAACAC
GCCACCCCTACCACCCACTAAAGTAACGAAAGAGAACCTTTGCGGTCAAG
TTCCAAAATCAAAAGCTCTTGGTCGTATCATTGCTGGAACGAACGCTTTA
CGTGGCTCATGGCCATGGCAAGTAGTCATCAAATTTCGTGATAGCTTGGT
ATGCGGTGGTGTTTTGATCGCACCAACACACGTGTTGACTGCTGCTCACT
GTTTTCAATCTATACCTCGTGGGATAATCAGTCTTTTGACTGTCACATTG
GGAGACCATAGACTGAACAAATACGATTCAGGCGAACAGAATTTCACCAT
TACAAAGATAGATATACACGAACATTTTTCTTCACCAACTATCTTCAACA
ATGACATAGCACTGCTCACGCTCAATACACCTGCCCGGTTTAACGAGCAC
ATACAACCAGTCTGTTTGCCTGACAGCGATGCTGATGTTATTGTAAATCG
GACATGTTATGTTACAGGATGGGGAAGATCATCAGTTTATTCGAACAAGA
TGTCAAACTCTCTTCAACAAACACGTTTAACAACACTTTCACATTCTGAA
TGTGTCAACAAAAACAATCAACTTCTACCAGTCAGCAACCAAATGTTCTG
TGCAGCACAGATCAACCCACAACTTCAAGCTAACAGTGCTTGTCATGGAG
ACTCAGGAGGTCCGTTGATGTGCAAAGAAACTGATGGTTCATGGACATTA
AATGGTCTTGTCAGTTGGGGTTCTGCGAAATGTGATACACAAGACGGATA
TACCGTCTTTGTAAAAGTCTCTAAGTTTATTCGTTGGACTGTCGGTAAAC
AGATTGCTGGGATGTTACAATCAAGGAAACAGAAGAATGTTGTCCAATAA
ACTCAAGTCGTCTGTGGATCAGAgataattttggataattttgttTGTGT
GTTTAAATCGAAAATTATGGTTTTGTCAGTTTTGTATATAGGAtatgaaa
caatgaaaaaagacaATAACGATTGAAGAAGAAACTTTGGGAAAGGAAAC
AAGAGAAGTTGGGTAAAACTTGCCATTTTCGATACTGGAGATTAACATGT
TcaaaatatacacgttttttttgtaTAAGCATTTGTCTGTCCTATTCCAG
GCTGGCATTATGGGGGgacattatgcttagcattctttTGTTCCCAAACA
GTAGAACCATTgcttaggtaccaaaaactgagcctgcatatgcttataaa
cgttatgcttataaaagaaaaaacatgtatgataaaatgacacataaaga
ttaagaaacgttgtatttcttttcaatacttaaagtttctt
Run BLAST on NCBI

protein sequence of TCONS_00027370-protein

>TCONS_00027370-protein ID=TCONS_00027370-protein|Name=TCONS_00027370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MLIYIATVFLLLSQNGIDAKTLPTFQSTTAGQPSAPNTPPLPPTKVTKEN
LCGQVPKSKALGRIIAGTNALRGSWPWQVVIKFRDSLVCGGVLIAPTHVL
TAAHCFQSIPRGIISLLTVTLGDHRLNKYDSGEQNFTITKIDIHEHFSSP
TIFNNDIALLTLNTPARFNEHIQPVCLPDSDADVIVNRTCYVTGWGRSSV
YSNKMSNSLQQTRLTTLSHSECVNKNNQLLPVSNQMFCAAQINPQLQANS
ACHGDSGGPLMCKETDGSWTLNGLVSWGSAKCDTQDGYTVFVKVSKFIRW
TVGKQIAGMLQSRKQKNVVQ
Run BLAST on NCBI

transcript from alignment at sc0000619:166159..171525-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027370 ID=TCONS_00027370|Name=TCONS_00027370|organism=Clytia hemisphaerica|type=transcript|length=5367bp|location=Sequence derived from alignment at sc0000619:166159..171525- (Clytia hemisphaerica)
TGATCGCATCATCAGTAAATTGAAACAAAATAAACGTCCCTTGATGCTCT
CTAATCCTTCCTTCGACTTTAAAAGGAAGGAACATGTCCAAGACAGAACA
ATTCAACCGAGGCACCTTCGAAGTAATAAGATCAGAGAAGAAATATCAGG
AGCCAAGCCCTGAAAATTGCAAGCAGAAGAAAACTTGACAACCTTTAACA
TCATTGGAACAACAAGTCATTTTCATATAAAAGAACCTGATAAATCAAAA
GTGCTAACAAAGGTATAAAGAAGTAGCTGCAGCTGAGATGTTGATTTACA
TTGCAACGGTCTTCCTGCTTCTTTCACAAAATGGTAAGTGAAAACATTTC
GTTTCTCCATGAACATATAAACAACTGGATGTCTATCTTCCATTGTATCT
TTGGAAGTGATAGCTTCGTTGCTGACATTGTTAGCAAGGTATTCCCAAGG
GGTATATCATCAGAATTTACTGTTTCATTTTATGGTTTTAACGAGGCGGC
AACAAAACTAGCAGTGCTTTCTACAAAATACAAAGGAGATGGATGTCCAG
TCGTTTATATAGGGTGTCTCGAGTCATACCACTTCTATAGAAAGAAAGTT
TTTGAAATCATCACCTTTAGGCAATGAATTGGATTACACTAACATTTTTG
AAAAAAACTTTGATTCTTCATAAACAGGCTATTTAAAACCTGAAAATTAT
TGATCCGAGGGGAAGGGTAATATCCTTGCCTACCGACGGTATCGTTTAAC
TTCTTGAACTTTGAGATTATCGATGGAATCAATCGAGTAAGCGGGCCTAA
GCACGTTTGAACTCATTGACTGAATTGGTCTGAAAACTGATCAAATTATC
CATTTGAATTATCGATCAATGAGCAAGATCATTTTTAGCAAAAAAACATT
CCCTGGGTTAACCTGAACAAACTTAAACGTGCATATTCTACTGGAACAAG
AGCTAATATAAGAAATATTTGTACCATTGTCATCTAAGAGGGTCGAATTT
GACAAAAATATGTTTACAAAAATCCCTCTTGTTCCGTAATCAAGCACAAT
GTTGCTCTTAAAAGAAAATTAAACATACTTGAGAGGGGTTGATTTTTTGA
TGCCAAGATAACGTTTTTTGGAAAAACAACAACATTCTTAATCATAATCA
AAATATTGATTAGTCATTGGTGACAACATTTTCTAAAGCCACATATTTAT
GAGGCTCCCCAGCGGTAACTCTAATCACGATATGACGCATTTTTTTGTCT
TCAATCACGATTACGTAAAACAGCAAAAAACTTTGATAATCACGCATCCC
TTTAGGGTTAGGGTTAGGGTTAGTCCAAGTCACGCATCACGACTTTGACT
TTTGCAATCACGAAGAATAAATTTCCATATCACGTAATCACTCTAGAAAA
AAGTCCTTACCACGACATCATGCAAGCTGCTTTGGGGGCCTCATTTATGA
CTGAATTGCAACGATACAATATCCCTGACAGTAGAATCCCTGTTCGACTT
CAATCTACCGGAAAAATAGACAAGGATATTGGACTCGTGGAATACCCAAC
CCGGTAGCTATCGGAGGATATTTGGCATAGGTTGATGGCTTTCAGTGGAG
CATTATCCATTCTGCACATACAGTTGACGCTCTCTAATTCGACGTTCTAC
TATTCGATAGGCTCCCTTATTCGATGAAATTTAAAGTCCCCGTCAACAAG
AAACTCTCATAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGAAACTCTCATAAACGACGTTCTACTA
TTCGATAAGCTCCCTTATTCGATGAAAATCCGATTCCCCTTGAAGATCGA
ATTAGAGAGCGTCAACTGTACATGTATTCAGAATTCAAACCGCGTAGGCT
TCTGCTCATCCTCTAGCGAAAAAAGTTTCTTATAGGAAGTATAGAAGTCT
GCGATTCAGACTTTTAGCGAAAGAAGCTGGGTCTAAAGTCCATGTTTATG
ACGTTCGTTGGCGTTTGTTTTAGAAGCGATTTTTTTGCGTTGGCTAATCA
CCACGCTCAAAAGCTCATTTAATATTCATCTCGATTTGGATGATAAACAT
TAAAGCGGTCCAACCTGGACAGATTTCCTTACGGAGCTATAGTAGCAATC
ATAGTGAATACGTGTCATGCGCAGAGTAATTAGGGTCTGCTATGAGTAGA
GCAAGGACTATAGAAGTTTTCATGGTTTGTTATGTTACGTACTTTCTATG
GAAGTAAATATTTGATTTGGGTAAGGGATTGCACTCTACAGATTCGAACG
TTTGCTTCCATAATTGCGAAAATTACGTAATACTTGCTTCCATAATTGCG
GAAAATACGTAACTTTGCAAAACATGAACCTCTATAGGTAACCGTATCCA
GGATTCATTTCTGACCAGCTAGAAAAATCACCGATGTAAAGTACGTTATA
TATAAGATCACTTTCTTTCAATTCCAGGCATAGATGCAAAGACTCTCCCG
ACATTTCAATCAACCACAGGTACGAACCCTTTCATCAATATTAATTGCCT
TATTCCAAAACACTACCAGAAGATATCCTTTGAAATCTCAAAAACAACGA
AATTGTTCAAAAGAAAAAGGTCAAAGATGATAGACACTATACCAGAGTGT
ATCTCACGTAAAACGTAAAAGAAGACATTGACAATAGACCCTTTACGACA
AAGAATTCTGAAATTTCCGTAGATAGTAACAACCATTTCACGATAAGCAC
GTTTTTACGCTTAAAAAGTCAAAAAGTTAAGAATATCTGAAGGTTTCAAA
AAATTTGAATGTTCTCATAAAAAACGTGTATACATTCATTTGGTTCAATT
TTAGCTGGACAACCATCTGCCCCAAACACGCCACCCCTACCACCCACTAA
AGTAACGAAAGGTAAGAATCCCTCTAAATTCCCATTTTTGCTAAATATTT
ATACACAAAAAATCCTTTCCCACTTTTACTAAACAGAAACAATAAATTTC
AAAATGTCTCAAACGGTCAAAGTGGTAAAATGTCAAGAAAATGTTCTATT
CTTTTCCAAAAATTTTCGTCAAAAAATTCGAGAAATCCTTCTCCAAAATT
ATCTTGATATTTCAAACCTTCACACAATAATATCTCTCATTTCAGAGAAC
CTTTGCGGTCAAGTTCCAAAATCAAAAGCTCTTGGTCGTATCATTGCTGG
AACGAACGCTTTACGTGGCTCATGGCCATGGCAAGTAGTCATCAAATTTC
GTGATAGCTTGGTATGCGGTGGTGTTTTGATCGCACCAACACACGTGTTG
ACTGCTGCTCACTGTTTTCAATCTATACCTCGTGGGATAATCAGTCTTTT
GACTGTCACATTGGGTAAGGTAGTCTAGCATTATTCAGACATAGTAGAAA
ATAAGCAAGAAATAATTGACAAATTTTACTTTGATAGGATTAATTTTCTC
GGAGATTGAATTTCGCGGATTTACGTGTTATCCGCGAAAGTAAGTTCAAG
TGGAAATTTGAAAAGGTTTTATCCGAGAATTTTTTAGGAATCAAATTCCA
CAAAATGTCAAGAGACGACTTTTAACACGTTTACCACCATCAAAGAAGCG
CTAACAATGCGTAAGTCCCTGCAACATCTTTGGCAGATGAGCTCAACTAA
CATGTATAGTTTGGCAGTGAAATAGCAAAAATTGCACAAAATCGTGAAAA
TATTGTCTCACAATAGAGCCATCTGCGAAACTAAGTCCCTGCAAAATCTT
TCGCGGATGAGCTCAACTGCGAAATCAATAAATAACATAATGCACCTGTA
GTATCTAAAGACCTCTAAACCTTTCACATGTTCATCTTTCAGGAGACCAT
AGACTGAACAAATACGATTCAGGCGAACAGAATTTCACCATTACAAAGAT
AGATATACACGAACATTTTTCTTCACCAACTATCTTCAACAATGACATAG
CACTGCTCACGCTCAATACACCTGCCCGGTTTAACGAGCACATACAACCA
GTCTGTTTGCCTGACAGCGATGCTGATGTTATTGTAAATCGGACATGTTA
TGTTACAGGTACAGATAGGGTATTATCTTTCTTGAATATGAGAATACACG
AGTCAACAAGTCAGTTAGGTATAGAGGAAACATCTCGTTTACAATTTGAG
GATTGCTTCAAACCCCATTTTCTCAAAGGAAAATCTAAGCGCGATACAGT
CTCCTATATCACCTGGTATTCCGGGTACTCGTCAGAACATTTTGACCAGT
GTTTGAGAACTTTTTAGCCGGTACGCCGGAATTTTACGAATAAAATTATC
GGTTTTCCTGTATTTTGTACACCTTGGAAGCCCTCAACTTCGTAGGTTTT
AAAATAATCTTTGATTTCTTTCCTTTTTCATTTTTCATGAAAGGATGGGG
AAGATCATCAGTTTATTCGAACAAGATGTCAAACTCTCTTCAACAAACAC
GTTTAACAACACTTTCACATTCTGAATGTGTCAACAAAAACAATCAACTT
CTACCAGTCAGCAACCAAATGTTCTGTGCAGCACAGATCAACCCACAACT
TCAAGCTAACAGTGCTTGTCATGGAGACTCAGGAGGTCCGTTGATGTGCA
AAGAAACTGATGGTTCATGGACATTAAATGGTCTTGTCAGTTGGGGTTCT
GCGAAATGTGATACACAAGACGGATATACCGTCTTTGTAAAAGTCTCTAA
GTTTATTCGTTGGACTGTCGGTAAACAGATTGCTGGGATGTTACAATCAA
GGAAACAGAAGAATGTTGTCCAATAAACTCAAGTCGTCTGTGGATCAGAG
ATAATTTTGGATAATTTTGTTTGTGTGTTTAAATCGAAAATTATGGTTTT
GTCAGTTTTGTATATAGGATATGAAACAATGAAAAAAGACAATAACGATT
GAAGAAGAAACTTTGGGAAAGGAAACAAGAGAAGTTGGGTAAAACTTGCC
ATTTTCGATACTGGAGATTAACATGTTCAAAATATACACGTTTTTTTTGT
ATAAGCATTTGTCTGTCCTATTCCAGGCTGGCATTATGGGGGGACATTAT
GCTTAGCATTCTTTTGTTCCCAAACAGTAGAACCATTGCTTAGGTACCAA
AAACTGAGCCTGCATATGCTTATAAACGTTATGCTTATAAAAGAAAAAAC
ATGTATGATAAAATGACACATAAAGATTAAGAAACGTTGTATTTCTTTTC
AATACTTAAAGTTTCTT

Coding sequence (CDS) from alignment at sc0000619:166159..171525-

>TCONS_00027370 ID=TCONS_00027370|Name=TCONS_00027370|organism=Clytia hemisphaerica|type=CDS|length=5778bp|location=Sequence derived from alignment at sc0000619:166159..171525- (Clytia hemisphaerica)
GATGGGGAAGATCATCAGTTTATTCGAACAAGATGTCAAACTCTCTTCAA
CAAACACGTTTAACAACACTTTCACATTCTGAATGTGTCAACAAAAACAA
TCAACTTCTACCAGTCAGCAACCAAATGTTCTGTGCAGCACAGATCAACC
CACAACTTCAAGCTAACAGTGCTTGTCATGGAGACTCAGGAGGTCCGTTG
ATGTGCAAAGAAACTGATGGTTCATGGACATTAAATGGTCTTGTCAGTTG
GGGTTCTGCGAAATGTGATACACAAGACGGATATACCGTCTTTGTAAAAG
TCTCTAAGTTTATTCGTTGGACTGTCGGTAAACAGATTGCTGGGATGTTA
CAATCAAGGAAACAGAAGAATGTTGTCCAATAAGAGACCATAGACTGAAC
AAATACGATTCAGGCGAACAGAATTTCACCATTACAAAGATAGATATACA
CGAACATTTTTCTTCACCAACTATCTTCAACAATGACATAGCACTGCTCA
CGCTCAATACACCTGCCCGGTTTAACGAGCACATACAACCAGTCTGTTTG
CCTGACAGCGATGCTGATGTTATTGTAAATCGGACATGTTATGTTACAGA
GAACCTTTGCGGTCAAGTTCCAAAATCAAAAGCTCTTGGTCGTATCATTG
CTGGAACGAACGCTTTACGTGGCTCATGGCCATGGCAAGTAGTCATCAAA
TTTCGTGATAGCTTGGTATGCGGTGGTGTTTTGATCGCACCAACACACGT
GTTGACTGCTGCTCACTGTTTTCAATCTATACCTCGTGGGATAATCAGTC
TTTTGACTGTCACATTGGCTGGACAACCATCTGCCCCAAACACGCCACCC
CTACCACCCACTAAAGTAACGAAAGGCATAGATGCAAAGACTCTCCCGAC
ATTTCAATCAACCACAGATGTTGATTTACATTGCAACGGTCTTCCTGCTT
CTTTCACAAAATGGATGGGGAAGATCATCAGTTTATTCGAACAAGATGTC
AAACTCTCTTCAACAAACACGTTTAACAACACTTTCACATTCTGAATGTG
TCAACAAAAACAATCAACTTCTACCAGTCAGCAACCAAATGTTCTGTGCA
GCACAGATCAACCCACAACTTCAAGCTAACAGTGCTTGTCATGGAGACTC
AGGAGGTCCGTTGATGTGCAAAGAAACTGATGGTTCATGGACATTAAATG
GTCTTGTCAGTTGGGGTTCTGCGAAATGTGATACACAAGACGGATATACC
GTCTTTGTAAAAGTCTCTAAGTTTATTCGTTGGACTGTCGGTAAACAGAT
TGCTGGGATGTTACAATCAAGGAAACAGAAGAATGTTGTCCAATAAGAGA
CCATAGACTGAACAAATACGATTCAGGCGAACAGAATTTCACCATTACAA
AGATAGATATACACGAACATTTTTCTTCACCAACTATCTTCAACAATGAC
ATAGCACTGCTCACGCTCAATACACCTGCCCGGTTTAACGAGCACATACA
ACCAGTCTGTTTGCCTGACAGCGATGCTGATGTTATTGTAAATCGGACAT
GTTATGTTACAGAGAACCTTTGCGGTCAAGTTCCAAAATCAAAAGCTCTT
GGTCGTATCATTGCTGGAACGAACGCTTTACGTGGCTCATGGCCATGGCA
AGTAGTCATCAAATTTCGTGATAGCTTGGTATGCGGTGGTGTTTTGATCG
CACCAACACACGTGTTGACTGCTGCTCACTGTTTTCAATCTATACCTCGT
GGGATAATCAGTCTTTTGACTGTCACATTGGCTGGACAACCATCTGCCCC
AAACACGCCACCCCTACCACCCACTAAAGTAACGAAAGGCATAGATGCAA
AGACTCTCCCGACATTTCAATCAACCACAGATGTTGATTTACATTGCAAC
GGTCTTCCTGCTTCTTTCACAAAATGGATGGGGAAGATCATCAGTTTATT
CGAACAAGATGTCAAACTCTCTTCAACAAACACGTTTAACAACACTTTCA
CATTCTGAATGTGTCAACAAAAACAATCAACTTCTACCAGTCAGCAACCA
AATGTTCTGTGCAGCACAGATCAACCCACAACTTCAAGCTAACAGTGCTT
GTCATGGAGACTCAGGAGGTCCGTTGATGTGCAAAGAAACTGATGGTTCA
TGGACATTAAATGGTCTTGTCAGTTGGGGTTCTGCGAAATGTGATACACA
AGACGGATATACCGTCTTTGTAAAAGTCTCTAAGTTTATTCGTTGGACTG
TCGGTAAACAGATTGCTGGGATGTTACAATCAAGGAAACAGAAGAATGTT
GTCCAATAAGAGACCATAGACTGAACAAATACGATTCAGGCGAACAGAAT
TTCACCATTACAAAGATAGATATACACGAACATTTTTCTTCACCAACTAT
CTTCAACAATGACATAGCACTGCTCACGCTCAATACACCTGCCCGGTTTA
ACGAGCACATACAACCAGTCTGTTTGCCTGACAGCGATGCTGATGTTATT
GTAAATCGGACATGTTATGTTACAGAGAACCTTTGCGGTCAAGTTCCAAA
ATCAAAAGCTCTTGGTCGTATCATTGCTGGAACGAACGCTTTACGTGGCT
CATGGCCATGGCAAGTAGTCATCAAATTTCGTGATAGCTTGGTATGCGGT
GGTGTTTTGATCGCACCAACACACGTGTTGACTGCTGCTCACTGTTTTCA
ATCTATACCTCGTGGGATAATCAGTCTTTTGACTGTCACATTGGCTGGAC
AACCATCTGCCCCAAACACGCCACCCCTACCACCCACTAAAGTAACGAAA
GGCATAGATGCAAAGACTCTCCCGACATTTCAATCAACCACAGATGTTGA
TTTACATTGCAACGGTCTTCCTGCTTCTTTCACAAAATGGATGGGGAAGA
TCATCAGTTTATTCGAACAAGATGTCAAACTCTCTTCAACAAACACGTTT
AACAACACTTTCACATTCTGAATGTGTCAACAAAAACAATCAACTTCTAC
CAGTCAGCAACCAAATGTTCTGTGCAGCACAGATCAACCCACAACTTCAA
GCTAACAGTGCTTGTCATGGAGACTCAGGAGGTCCGTTGATGTGCAAAGA
AACTGATGGTTCATGGACATTAAATGGTCTTGTCAGTTGGGGTTCTGCGA
AATGTGATACACAAGACGGATATACCGTCTTTGTAAAAGTCTCTAAGTTT
ATTCGTTGGACTGTCGGTAAACAGATTGCTGGGATGTTACAATCAAGGAA
ACAGAAGAATGTTGTCCAATAAGAGACCATAGACTGAACAAATACGATTC
AGGCGAACAGAATTTCACCATTACAAAGATAGATATACACGAACATTTTT
CTTCACCAACTATCTTCAACAATGACATAGCACTGCTCACGCTCAATACA
CCTGCCCGGTTTAACGAGCACATACAACCAGTCTGTTTGCCTGACAGCGA
TGCTGATGTTATTGTAAATCGGACATGTTATGTTACAGAGAACCTTTGCG
GTCAAGTTCCAAAATCAAAAGCTCTTGGTCGTATCATTGCTGGAACGAAC
GCTTTACGTGGCTCATGGCCATGGCAAGTAGTCATCAAATTTCGTGATAG
CTTGGTATGCGGTGGTGTTTTGATCGCACCAACACACGTGTTGACTGCTG
CTCACTGTTTTCAATCTATACCTCGTGGGATAATCAGTCTTTTGACTGTC
ACATTGGCTGGACAACCATCTGCCCCAAACACGCCACCCCTACCACCCAC
TAAAGTAACGAAAGGCATAGATGCAAAGACTCTCCCGACATTTCAATCAA
CCACAGATGTTGATTTACATTGCAACGGTCTTCCTGCTTCTTTCACAAAA
TGGATGGGGAAGATCATCAGTTTATTCGAACAAGATGTCAAACTCTCTTC
AACAAACACGTTTAACAACACTTTCACATTCTGAATGTGTCAACAAAAAC
AATCAACTTCTACCAGTCAGCAACCAAATGTTCTGTGCAGCACAGATCAA
CCCACAACTTCAAGCTAACAGTGCTTGTCATGGAGACTCAGGAGGTCCGT
TGATGTGCAAAGAAACTGATGGTTCATGGACATTAAATGGTCTTGTCAGT
TGGGGTTCTGCGAAATGTGATACACAAGACGGATATACCGTCTTTGTAAA
AGTCTCTAAGTTTATTCGTTGGACTGTCGGTAAACAGATTGCTGGGATGT
TACAATCAAGGAAACAGAAGAATGTTGTCCAATAAGAGACCATAGACTGA
ACAAATACGATTCAGGCGAACAGAATTTCACCATTACAAAGATAGATATA
CACGAACATTTTTCTTCACCAACTATCTTCAACAATGACATAGCACTGCT
CACGCTCAATACACCTGCCCGGTTTAACGAGCACATACAACCAGTCTGTT
TGCCTGACAGCGATGCTGATGTTATTGTAAATCGGACATGTTATGTTACA
GAGAACCTTTGCGGTCAAGTTCCAAAATCAAAAGCTCTTGGTCGTATCAT
TGCTGGAACGAACGCTTTACGTGGCTCATGGCCATGGCAAGTAGTCATCA
AATTTCGTGATAGCTTGGTATGCGGTGGTGTTTTGATCGCACCAACACAC
GTGTTGACTGCTGCTCACTGTTTTCAATCTATACCTCGTGGGATAATCAG
TCTTTTGACTGTCACATTGGCTGGACAACCATCTGCCCCAAACACGCCAC
CCCTACCACCCACTAAAGTAACGAAAGGCATAGATGCAAAGACTCTCCCG
ACATTTCAATCAACCACAGATGTTGATTTACATTGCAACGGTCTTCCTGC
TTCTTTCACAAAATGGATGGGGAAGATCATCAGTTTATTCGAACAAGATG
TCAAACTCTCTTCAACAAACACGTTTAACAACACTTTCACATTCTGAATG
TGTCAACAAAAACAATCAACTTCTACCAGTCAGCAACCAAATGTTCTGTG
CAGCACAGATCAACCCACAACTTCAAGCTAACAGTGCTTGTCATGGAGAC
TCAGGAGGTCCGTTGATGTGCAAAGAAACTGATGGTTCATGGACATTAAA
TGGTCTTGTCAGTTGGGGTTCTGCGAAATGTGATACACAAGACGGATATA
CCGTCTTTGTAAAAGTCTCTAAGTTTATTCGTTGGACTGTCGGTAAACAG
ATTGCTGGGATGTTACAATCAAGGAAACAGAAGAATGTTGTCCAATAAGA
GACCATAGACTGAACAAATACGATTCAGGCGAACAGAATTTCACCATTAC
AAAGATAGATATACACGAACATTTTTCTTCACCAACTATCTTCAACAATG
ACATAGCACTGCTCACGCTCAATACACCTGCCCGGTTTAACGAGCACATA
CAACCAGTCTGTTTGCCTGACAGCGATGCTGATGTTATTGTAAATCGGAC
ATGTTATGTTACAGAGAACCTTTGCGGTCAAGTTCCAAAATCAAAAGCTC
TTGGTCGTATCATTGCTGGAACGAACGCTTTACGTGGCTCATGGCCATGG
CAAGTAGTCATCAAATTTCGTGATAGCTTGGTATGCGGTGGTGTTTTGAT
CGCACCAACACACGTGTTGACTGCTGCTCACTGTTTTCAATCTATACCTC
GTGGGATAATCAGTCTTTTGACTGTCACATTGGCTGGACAACCATCTGCC
CCAAACACGCCACCCCTACCACCCACTAAAGTAACGAAAGGCATAGATGC
AAAGACTCTCCCGACATTTCAATCAACCACAGATGTTGATTTACATTGCA
ACGGTCTTCCTGCTTCTTTCACAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015403XLOC_015403Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027370-proteinTCONS_00027370-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027370-exon-sc0000619-1575043694:171193..171525TCONS_00027370-exon-sc0000619-1575043694:171193..171525Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1575043694:168857..168898TCONS_00027370-exon-sc0000619-1575043694:168857..168898Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1575043694:168465..168521TCONS_00027370-exon-sc0000619-1575043694:168465..168521Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1575043694:168012..168230TCONS_00027370-exon-sc0000619-1575043694:168012..168230Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1575043694:167318..167533TCONS_00027370-exon-sc0000619-1575043694:167318..167533Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1575043694:166159..166982TCONS_00027370-exon-sc0000619-1575043694:166159..166982Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1510915933:171193..171525TCONS_00027370-exon-sc0000619-1510915933:171193..171525Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1510915933:168857..168898TCONS_00027370-exon-sc0000619-1510915933:168857..168898Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1510915933:168465..168521TCONS_00027370-exon-sc0000619-1510915933:168465..168521Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1510915933:168012..168230TCONS_00027370-exon-sc0000619-1510915933:168012..168230Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1510915933:167318..167533TCONS_00027370-exon-sc0000619-1510915933:167318..167533Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1510915933:166159..166982TCONS_00027370-exon-sc0000619-1510915933:166159..166982Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1491911889:171193..171525TCONS_00027370-exon-sc0000619-1491911889:171193..171525Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1491911889:168857..168898TCONS_00027370-exon-sc0000619-1491911889:168857..168898Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1491911889:168465..168521TCONS_00027370-exon-sc0000619-1491911889:168465..168521Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1491911889:168012..168230TCONS_00027370-exon-sc0000619-1491911889:168012..168230Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1491911889:167318..167533TCONS_00027370-exon-sc0000619-1491911889:167318..167533Clytia hemisphaericaexon
TCONS_00027370-exon-sc0000619-1491911889:166159..166982TCONS_00027370-exon-sc0000619-1491911889:166159..166982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000619supercontigsc0000619:166159..171525 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0248877	0	0.0898681	0.0888074	0.0325438	0.0260427	0.0619769	0.0874346	0.0680191	0.181458	0.123668	0.0196717	38.9303	34.7239	2.01145	1.77516	2.01213	1.21011	17.3874	8.20338	7.3943	8.01563	0.940343	0.986601	3.84669	8.94294	0.0373737	0.108993	0.0537426	0.0859343
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR033116TRYPSIN_SER
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00027370 vs. Swiss-Prot (Human)
Match: CTRB2 (Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 6.759e-46
Identity = 98/246 (39.84%), Postives = 136/246 (55.28%), Query Frame = 3 
Query:  453 PKSKALGRIIAGTNALRGSWPWQVVIKFRDSL-VCGGVLIAPTHVLTAAHCFQSIPRGIISLLTVTLGDHRLNKYDSGEQNFTITKIDIHEHFSSPTIFNNDIALLTLNTPARFNEHIQPVCLPDSDADVIVNRTCYVTGWGRSSVYSNKMSNSLQQTRLTTLSHSECVNKNNQLLPVSNQMFCAAQINPQLQANSACHGDSGGPLMCKETDGSWTLNGLVSWGSAKCDTQDGYTVFVKVSKFIRW 1187
            P    L RI+ G +A+ GSWPWQV ++ +     CGG LI+   V+TAAHC      G+ +   V  G+      +   Q   I K+  +  FS  T+ NNDI LL L TPARF++ +  VCLP +D D      C  TGWG++   +NK  + LQQ  L  LS++EC  K +    +++ M CA          S+C GDSGGPL+C++ DG+WTL G+VSWGS  C T     V+ +V+K I W
Sbjct:   26 PVLSGLSRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC------GVRTSDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFSILTV-NNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAEC--KKSWGRRITDVMICAGA-----SGVSSCMGDSGGPLVCQK-DGAWTLVGIVSWGSRTCSTTT-PAVYARVAKLIPW 255
The following BLAST results are available for this feature:
BLAST of TCONS_00027370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRB26.759e-4639.84Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 ... [more]
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