TCONS_00027374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027374
Unique NameTCONS_00027374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027374 ID=TCONS_00027374|Name=TCONS_00027374|organism=Clytia hemisphaerica|type=transcript|length=411bp
gaGTAATTTTAGCGGTTTAAATTTATTTGGGGTTCTAAAGTCAAACTAAA
AcataaatttagatttttagactttctttattttctacATGAGACTGTTT
CAcatctaaaatttgaaaacaaaacgaAATCAGATTAACTCACTTCATCG
CTCAACGATGGTGCATCGCCATTCCACATGTTATTGCCACCCGCCACCAG
GGCGTTTATGGATAACATACATGAAAATGCGATGGTCAGCAATAGTAAAT
ACGTTCTTGATTgcatcttgaaaattttttttgttgatttcaaaaataaa
atcttgtactgtacaatttcttttttttcgatttctctTGACTGCTGCGA
TCAGAGTAAGTGATTAAAAGtaatatattgaaaaataaGGGAACCTTGTT
TTATATATAAG
Run BLAST on NCBI

transcript from alignment at sc0000619:134982..135392

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027374 ID=TCONS_00027374|Name=TCONS_00027374|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0000619:134982..135392 (Clytia hemisphaerica)
CTTATATATAAAACAAGGTTCCCttatttttcaatatattaCTTTTAATC
ACTTACTCTGATCGCAGCAGTCAagagaaatcgaaaaaaaagaaattgta
cagtacaagattttatttttgaaatcaacaaaaaaaattttcaagatgcA
ATCAAGAACGTATTTACTATTGCTGACCATCGCATTTTCATGTATGTTAT
CCATAAACGCCCTGGTGGCGGGTGGCAATAACATGTGGAATGGCGATGCA
CCATCGTTGAGCGATGAAGTGAGTTAATCTGATTtcgttttgttttcaaa
ttttagatgTGAAACAGTCTCATgtagaaaataaagaaagtctaaaaatc
taaatttatgTTTTAGTTTGACTTTAGAACCCCAAATAAATTTAAACCGC
TAAAATTACtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015407XLOC_015407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027374-exon-sc0000619-1491911889:134982..135392TCONS_00027374-exon-sc0000619-1491911889:134982..135392Clytia hemisphaericaexon
TCONS_00027374-exon-sc0000619-1510915933:134982..135392TCONS_00027374-exon-sc0000619-1510915933:134982..135392Clytia hemisphaericaexon
TCONS_00027374-exon-sc0000619-1575043694:134982..135392TCONS_00027374-exon-sc0000619-1575043694:134982..135392Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000619supercontigsc0000619:134982..135392 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.187162	0.225803	0.845577	9.62013	11.1828	1.24557	13.1007	16.9371	11.2814	0	0	13.712	12.2976	117.062	168.994	15.1132	19.6302	7.24956	10.8018	7.54275	7.06831	27.2134	23.1315	0.584815	0.397222
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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