TCONS_00027376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027376
Unique NameTCONS_00027376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027376 ID=TCONS_00027376|Name=TCONS_00027376|organism=Clytia hemisphaerica|type=transcript|length=365bp
AAAGAGCTCACACCATACGCGTTTAAAAACGATggagagaaaaagaaaga
aaaagtatcAGACGATCATGTTTATTTAACGCATCAATAGCTCTATTTTA
ATTTGATCACACCATGAATATTTTAGTGGTTTCCACATTCCATAGAGTTT
CCGCATAGCGATATTAACAGATGTCAAACCcacttgaaaacaaattttca
ttcccTCCTTTTTCTAAGAATTGTGTAcaaattcttcttttgtttatttc
atttctttgaTCTTACCGACTCCACTTTTACCAAatagtttaatgttttt
cttttgtgtgCACAAATTCGCATGTAATGTAAACAAATCGATTTATAAAG
GACTATTTATTTGCG
Run BLAST on NCBI

transcript from alignment at sc0000619:199130..199494

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027376 ID=TCONS_00027376|Name=TCONS_00027376|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at sc0000619:199130..199494 (Clytia hemisphaerica)
CGCAAATAAATAGTCCTTTATAAATCGATTTGTTTACATTACATGCGAAT
TTGTGcacacaaaagaaaaacattaaactatTTGGTAAAAGTGGAGTCGG
TAAGAtcaaagaaatgaaataaacaaaagaagaatttgTACACAATTCTT
AGAAAAAGGAgggaatgaaaatttgttttcaagtgGGTTTGACATCTGTT
AATATCGCTATGCGGAAACTCTATGGAATGTGGAAACCACTAAAATATTC
ATGGTGTGATCAAATTAAAATAGAGCTATTGATGCGTTAAATAAACATGA
TCGTCTgatactttttctttctttttctctccATCGTTTTTAAACGCGTA
TGGTGTGAGCTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015409XLOC_015409Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027376-exon-sc0000619-1491911889:199130..199494TCONS_00027376-exon-sc0000619-1491911889:199130..199494Clytia hemisphaericaexon
TCONS_00027376-exon-sc0000619-1510915933:199130..199494TCONS_00027376-exon-sc0000619-1510915933:199130..199494Clytia hemisphaericaexon
TCONS_00027376-exon-sc0000619-1575043694:199130..199494TCONS_00027376-exon-sc0000619-1575043694:199130..199494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000619supercontigsc0000619:199130..199494 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.229161	0.221772	0.259593	0.253845	0.30669	0.484702	0.584772	0.273728	0	0	0.460817	0.302923	0	0.785377	0.903962	0.554337	0.682898	0.524961	0	0.512426	0.219884	0	0.521514	0	0.488345	0.435836	0	0.998412	0	0.257176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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