TCONS_00027377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027377
Unique NameTCONS_00027377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027377 ID=TCONS_00027377|Name=TCONS_00027377|organism=Clytia hemisphaerica|type=transcript|length=511bp
ATAAATTGAGATTTTTCCAAGGAGACCACCCTGAGCTGCAATTTGAAAGT
GGGAATAGTGTTGGTGGAAACTATCCTTGCCACTGTGGATGTCCAAAGTT
TGAATTTAATAATCCTGGCAAAGGCTACAAATACAAATTGACTTCACTAG
AATGGAGAAGGGAGAAACTCACACAAACTCGAAGAGGTAGACAGGAGAAT
GAGATGAATCCGCTTTCAAATTTAAAAGCTCAAGATCTTTTTAATGAAGT
GATGGACCGAAATCTATTGGAAAAAGATTCAAGCCTTCTGAAGGACTACC
TGGAACACCTATTAAAGACTGAAATGGCTGGCCTGGTGCGTCCTCCTGCT
TTATGCAAAGGTTGTGTGAATATATCAACAGAAGAGACAAATACATCAAA
ATATGAGGTTTGAGATTTGACTTTACCAGACACTAACTTTACTTGACATA
ACATGACATCAATTGCTCCCATGAGCTAGCTATAAGACCTGGTAGCTTAA
TTTGGTAGAGC
Run BLAST on NCBI

protein sequence of TCONS_00027377-protein

>TCONS_00027377-protein ID=TCONS_00027377-protein|Name=TCONS_00027377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
KLRFFQGDHPELQFESGNSVGGNYPCHCGCPKFEFNNPGKGYKYKLTSLE
WRREKLTQTRRGRQENEMNPLSNLKAQDLFNEVMDRNLLEKDSSLLKDYL
EHLLKTEMAGLVRPPALCKGCVNISTEETNTSKYEV
Run BLAST on NCBI

transcript from alignment at sc0000620:57480..58327+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027377 ID=TCONS_00027377|Name=TCONS_00027377|organism=Clytia hemisphaerica|type=transcript|length=848bp|location=Sequence derived from alignment at sc0000620:57480..58327+ (Clytia hemisphaerica)
ATAAATTGAGATTTTTCCAAGGTATGcactttttatttataagccTAACA
TTTTGGTCaggctgaaattttgaaatatttaagcaTGATCCTAAGCATAT
TTCCAAGTTGAGATGCTAATAAAACAAGACTAATCGGATATTCTTGAAAT
ATATTGATGAGGAAATTGGAAATCTCCTTCAAATTTTGTGGATATATTTG
TAATCAAATTACCCTTAATCAATTATTTGACTTTTGTAGGAGACCACCCT
GAGCTGCAATTTGAAAGTGGGAATAGTGTTGGTGGAAACTATCCTTGCCA
CTGTGGATGTCCAAAGTTTGAATTTAATAATCCTGGCAAAGGCTACAAAT
ACAAATTGACTTCACTAGAATGGAGAAGGGAGAAAGTATGTACCATTGAA
TTTTCCGTTAATATTTGTAAGAATGCATCCAATGTAAAAGCTAAATTTTT
CTGttcatttaagttttttttcttaaatttctcattTCTCACTGATACTT
TCAGCTCACACAAACTCGAAGAGGTAGACAGGAGAATGAGATGAATCCGC
TTTCAAATTTAAAAGCTCAAGATCTTTTTAATGAAGTGATGGACCGAAAT
CTATTGGAAAAAGATTCAAGCCTTCTGAAGGACTACCTGGAACACCTATT
AAAGACTGAAATGGCTGGCCTGGTGCGTCCTCCTGCTTTATGCAAAGGTT
GTGTGAATATATCAACAGAAGAGACAAATACATCAAAATATGAGGTTTGA
GATTTGACTTTACCAGACACTAACTTTACTTGACATAACATGACATCAAT
TGCTCCCATGAGCTAGCTATAAGACCTGGTAGCTTAATTTGGTAGAGC

Coding sequence (CDS) from alignment at sc0000620:57480..58327+

>TCONS_00027377 ID=TCONS_00027377|Name=TCONS_00027377|organism=Clytia hemisphaerica|type=CDS|length=1233bp|location=Sequence derived from alignment at sc0000620:57480..58327+ (Clytia hemisphaerica)
AAATTGAGATTTTTCCAAGGAGACCACCCTGAGCTGCAATTTGAAAGTGG
GAATAGTGTTGGTGGAAACTATCCTTGCCACTGTGGATGTCCAAAGTTTG
AATTTAATAATCCTGGCAAAGGCTACAAATACAAATTGACTTCACTAGAA
TGGAGAAGGGAGAAACTCACACAAACTCGAAGAGGTAGACAGGAGAATGA
GATGAATCCGCTTTCAAATTTAAAAGCTCAAGATCTTTTTAATGAAGTGA
TGGACCGAAATCTATTGGAAAAAGATTCAAGCCTTCTGAAGGACTACCTG
GAACACCTATTAAAGACTGAAATGGCTGGCCTGGTGCGTCCTCCTGCTTT
ATGCAAAGGTTGTGTGAATATATCAACAGAAGAGACAAATACATCAAAAT
ATGAGGTTTGAAAATTGAGATTTTTCCAAGGAGACCACCCTGAGCTGCAA
TTTGAAAGTGGGAATAGTGTTGGTGGAAACTATCCTTGCCACTGTGGATG
TCCAAAGTTTGAATTTAATAATCCTGGCAAAGGCTACAAATACAAATTGA
CTTCACTAGAATGGAGAAGGGAGAAACTCACACAAACTCGAAGAGGTAGA
CAGGAGAATGAGATGAATCCGCTTTCAAATTTAAAAGCTCAAGATCTTTT
TAATGAAGTGATGGACCGAAATCTATTGGAAAAAGATTCAAGCCTTCTGA
AGGACTACCTGGAACACCTATTAAAGACTGAAATGGCTGGCCTGGTGCGT
CCTCCTGCTTTATGCAAAGGTTGTGTGAATATATCAACAGAAGAGACAAA
TACATCAAAATATGAGGTTTGAAAATTGAGATTTTTCCAAGGAGACCACC
CTGAGCTGCAATTTGAAAGTGGGAATAGTGTTGGTGGAAACTATCCTTGC
CACTGTGGATGTCCAAAGTTTGAATTTAATAATCCTGGCAAAGGCTACAA
ATACAAATTGACTTCACTAGAATGGAGAAGGGAGAAACTCACACAAACTC
GAAGAGGTAGACAGGAGAATGAGATGAATCCGCTTTCAAATTTAAAAGCT
CAAGATCTTTTTAATGAAGTGATGGACCGAAATCTATTGGAAAAAGATTC
AAGCCTTCTGAAGGACTACCTGGAACACCTATTAAAGACTGAAATGGCTG
GCCTGGTGCGTCCTCCTGCTTTATGCAAAGGTTGTGTGAATATATCAACA
GAAGAGACAAATACATCAAAATATGAGGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015410XLOC_015410Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027377-proteinTCONS_00027377-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027377-exon-sc0000620-1491911889:57480..57500TCONS_00027377-exon-sc0000620-1491911889:57480..57500Clytia hemisphaericaexon
TCONS_00027377-exon-sc0000620-1510915933:57480..57500TCONS_00027377-exon-sc0000620-1510915933:57480..57500Clytia hemisphaericaexon
TCONS_00027377-exon-sc0000620-1575043694:57480..57500TCONS_00027377-exon-sc0000620-1575043694:57480..57500Clytia hemisphaericaexon
TCONS_00027377-exon-sc0000620-1491911889:57719..57864TCONS_00027377-exon-sc0000620-1491911889:57719..57864Clytia hemisphaericaexon
TCONS_00027377-exon-sc0000620-1510915933:57719..57864TCONS_00027377-exon-sc0000620-1510915933:57719..57864Clytia hemisphaericaexon
TCONS_00027377-exon-sc0000620-1575043694:57719..57864TCONS_00027377-exon-sc0000620-1575043694:57719..57864Clytia hemisphaericaexon
TCONS_00027377-exon-sc0000620-1491911889:57984..58327TCONS_00027377-exon-sc0000620-1491911889:57984..58327Clytia hemisphaericaexon
TCONS_00027377-exon-sc0000620-1510915933:57984..58327TCONS_00027377-exon-sc0000620-1510915933:57984..58327Clytia hemisphaericaexon
TCONS_00027377-exon-sc0000620-1575043694:57984..58327TCONS_00027377-exon-sc0000620-1575043694:57984..58327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000620supercontigsc0000620:57480..58327 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.214199	0.229115	0	0	0.435787	0.444342	0.792388	0	0.655066	0.295058	0.517033	0.609407	1.35028	0.964567	0.98021	0.591789	1.04692	1.92939	0.787621	1.219	1.60051	0.93611	0.405473	0.309187	0	0	0.567187	2.86044	1.37673	0.348153
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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