TCONS_00027379 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027379
Unique NameTCONS_00027379
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027379 ID=TCONS_00027379|Name=TCONS_00027379|organism=Clytia hemisphaerica|type=transcript|length=636bp
tttcaacagaGAAATGGTAGAAGAAAGTCTGGTGtagatagcaaaattag
caaaGCTGCTAAAGGCCTAGGTAAATTGAACTATAAGTTTAGAATTCAAT
TATTCAGTAAAGACTGAAATAATTCAGGGAAGTTATCTCGCCTTCTTTTA
AGATGATTAGAACATAGCTATAAtacaagatatttttatgttgaatGGCT
AAgctgttattattattatttagaaCGTGGTTCAAATGCAAAGTTTTTGG
TAAGTGAGTTCGAAAGTCAAGACTGGCGTGCCTTCCTGCAACAAATCAGT
GACTTTTTGAAACACGATGAAGGAGTTTGGTGGAAAAGAGACGGCAATTA
TGTCGAATTTTTGGATggtgaagatgaagatgatttTCGCGAAGAAGGTC
CACGGTTGAAGGATTTTACTGATACAATGTTTTATGAAcTTTACGAGCCT
TTGAAGCAAGACTGGGAAGAGTGTAAAAGGAACGGCGTTGCTGCGAAACT
ATTGGATAGCAGCTACATCGACGAAGACGATGGTCCAGAAGTTGAGGAGC
CAAGAAAAGAAAGTCCTCCACAAGAACGAGAgaaagaacaagaagaagaa
agCGTGGAAATCATTGAGGTTGCTGCAAATGTTGAG
Run BLAST on NCBI

transcript from alignment at sc0000620:59445..60702+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027379 ID=TCONS_00027379|Name=TCONS_00027379|organism=Clytia hemisphaerica|type=transcript|length=1258bp|location=Sequence derived from alignment at sc0000620:59445..60702+ (Clytia hemisphaerica)
tttcaacagaGAAATGGTAGAAGAAAGTCTGGTGtagatagcaaaattag
caaaGCTGCTAAAGGCCTAGGTAAATTGAACTATAAGTTTAGAATTCAAT
TATTCAGTAAAGACTGAAATAATTCAGGGAAGTTATCTCGCCTTCTTTTA
AGATGATTAGAACATAGCTATAAtacaagatatttttatgttgaatGGCT
AAgctgttattattattatttagaaCGTGGTTCAAATGCAAAGTTTTTGG
TAAGTGAGTTCGAAAGTCAAGACTGGCGTGCCTTCCTGCAACAAATCAGT
GACTTTTTGAAACACGATGAAGGAGTTTGGTGGAAAAGAGACGGCAATTA
TGTCGAATTTTTGGATggtgaagatgaagatgatttTCGCGAAGAAGGTC
CACGGTTGAAGGATTTTACTGATACAATGTTTTATGAAGTAAGTTAACTT
TATTTTTTGGCTCATTTTTTCCCTGGCCAGTCAGAGGTGTGATTCTATTG
GAAGTGATTATGAATCCCTTTTCTCTTTTGTGTctaatttttgtgatttt
ccctCTGAAAATGAAGGTCATAATCAGTCATAAAAATGAAGGAGGTCTTN
ACTGTTTTGTTGGTACTTCGCTCATTTTTTCCCTGGCCAGTCAGAGGTGT
GATTCTATCGGAAGTGTGATTATGAATCCCTTTACTCTTTTGTGTCTAAT
TTTAGGGGGTCTATAATTTAGAGATGgtgtttttttgtgattttccctCT
GAAAATGAAGGTCATAATCAGTCATAAAAATGAAGGAGGTCTTAAAGTGA
TATTGAGTTGAGAAATCTGataaatctctttttaaaagaGTACAAAGTAC
GAAATtctgattcaaattttatttttctttaatttagcTTTACGAGCCTT
TGAAGCAAGACTGGGAAGAGTGTAAAAGGAACGGCGTTGCTGCGAAACTA
TTGGATAGCAGCTACATCGACGAAGGTATATTAGTTTCTTTTTCATAATC
ATAACTAAAACCATAAAGTGGGGAGGATCATAATTAAATACTATAGGGTG
ATTCATTAATctctaataaaaatttctaataaaATGGAGAATATATTAAA
CCTGCATATCCACCACTCATTCACACCTATAACATTTAATTTTCTAAGAC
GATGGTCCAGAAGTTGAGGAGCCAAGAAAAGAAAGTCCTCCACAAGAACG
AGAgaaagaacaagaagaagaaagCGTGGAAATCATTGAGGTTGCTGCAA
ATGTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015411XLOC_015411Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027379-exon-sc0000620-1491911889:59445..59882TCONS_00027379-exon-sc0000620-1491911889:59445..59882Clytia hemisphaericaexon
TCONS_00027379-exon-sc0000620-1510915933:59445..59882TCONS_00027379-exon-sc0000620-1510915933:59445..59882Clytia hemisphaericaexon
TCONS_00027379-exon-sc0000620-1575043694:59445..59882TCONS_00027379-exon-sc0000620-1575043694:59445..59882Clytia hemisphaericaexon
TCONS_00027379-exon-sc0000620-1491911889:60332..60419TCONS_00027379-exon-sc0000620-1491911889:60332..60419Clytia hemisphaericaexon
TCONS_00027379-exon-sc0000620-1510915933:60332..60419TCONS_00027379-exon-sc0000620-1510915933:60332..60419Clytia hemisphaericaexon
TCONS_00027379-exon-sc0000620-1575043694:60332..60419TCONS_00027379-exon-sc0000620-1575043694:60332..60419Clytia hemisphaericaexon
TCONS_00027379-exon-sc0000620-1491911889:60593..60702TCONS_00027379-exon-sc0000620-1491911889:60593..60702Clytia hemisphaericaexon
TCONS_00027379-exon-sc0000620-1510915933:60593..60702TCONS_00027379-exon-sc0000620-1510915933:60593..60702Clytia hemisphaericaexon
TCONS_00027379-exon-sc0000620-1575043694:60593..60702TCONS_00027379-exon-sc0000620-1575043694:60593..60702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000620supercontigsc0000620:59445..60702 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.111065	0.184074	0.441764	0.528059	0	0	0.397473	0.3469	0	0.920771	0.726617	0	0.850246	1.142	2.02147	2.18095	0.199573	1.11899	1.32439	1.47309	0.476418	0.250637	0	0.0923668	2.13182	3.2103	1.20744	0.492125
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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