TCONS_00027384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027384
Unique NameTCONS_00027384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027384 ID=TCONS_00027384|Name=TCONS_00027384|organism=Clytia hemisphaerica|type=transcript|length=421bp
AGTTTAAGACATGGAAAAAAGATCATGACATTGAAAGTTTCACTAATATT
ACTGATGACGAGTTGGACAATATAATTTCTGAAATACTAGAGGCATCCCC
TAATTTTGGTGAAAGGATGGTAGTTGGATCACTTCAAGCAAGGGGTCAAA
TTATTGAGAGGGCAAAGGTTCGCGAATCTTTAACGCGTGTGAACCCAGAA
AGAAATTCACTtaacaaaagaataaaaagaagagttTACAGTGTTCCATT
CCCAAATGCATTATGGCACCTTGATGGGAACCATAAACTTATTAGTTGGC
GTTTTGTGATTCATGGGTGCATAGATGGGTTTTCGCGCATCATAGTTTTC
CTGAAATGTTCAACTAATAACAAATCAATTACTGTCTTAGAAAACTTTTT
GGAATCCATCCTTGAATTTCG
Run BLAST on NCBI

protein sequence of TCONS_00027384-protein

>TCONS_00027384-protein ID=TCONS_00027384-protein|Name=TCONS_00027384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
FKTWKKDHDIESFTNITDDELDNIISEILEASPNFGERMVVGSLQARGQI
IERAKVRESLTRVNPERNSLNKRIKRRVYSVPFPNALWHLDGNHKLISWR
FVIHGCIDGFSRIIVFLKCSTNNKSITVLENFLESILEF
Run BLAST on NCBI

transcript from alignment at sc0000620:51975..52618-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027384 ID=TCONS_00027384|Name=TCONS_00027384|organism=Clytia hemisphaerica|type=transcript|length=644bp|location=Sequence derived from alignment at sc0000620:51975..52618- (Clytia hemisphaerica)
AGTTTAAGACATGGAAAAAAGATCATGACATTGAAAGTTTCACTAATATT
ACTGATGACGAGTTGGACAATATAATTTCTGAAATACTAGAGGCATCCCC
TAATTTTGGTGAAAGGATGGTAGTTGGATCACTTCAAGCAAGGGGTCAAA
TTATTGAGAGGGCAAAGGTTCGCGAATCTTTAACGCGTGTGAACCCAGAA
AGAAATTCACTTAACAAAAGAATAAAAAGAAGAGTTTACAGTGTTCCATT
CCCAAATGCATTATGGTAAATTCTATTTATCAAGACTTTGGTTCCTTTCC
AGCATTTTTCTTTCAAGTATTCACTCTGTTCCTTGACCTTTTCAAAGCCC
ATTCTTGTTATATGGAATACCTGCCTATTTGAACATCCATCGTGTACTTC
TTTTAGTCTCTGCTTAAGTTTAAGATATTTGGTCATTAAAAGTCAACTGT
ATAATTTGATCTTAAAACTTCTCTTTTATCTCCTCCAGGCACCTTGATGG
GAACCATAAACTTATTAGTTGGCGTTTTGTGATTCATGGGTGCATAGATG
GGTTTTCGCGCATCATAGTTTTCCTGAAATGTTCAACTAATAACAAATCA
ATTACTGTCTTAGAAAACTTTTTGGAATCCATCCTTGAATTTCG

Coding sequence (CDS) from alignment at sc0000620:51975..52618-

>TCONS_00027384 ID=TCONS_00027384|Name=TCONS_00027384|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0000620:51975..52618- (Clytia hemisphaerica)
GCACCTTGATGGGAACCATAAACTTATTAGTTGGCGTTTTGTGATTCATG
GGTGCATAGATGGGTTTTCGCGCATCATAGTTTTCCTGAAATGTTCAACT
AATAACAAATCAATTACTGTCTTAGAAAACTTTTTGGAATCCATCCTTGA
ATTTTTTAAGACATGGAAAAAAGATCATGACATTGAAAGTTTCACTAATA
TTACTGATGACGAGTTGGACAATATAATTTCTGAAATACTAGAGGCATCC
CCTAATTTTGGTGAAAGGATGGTAGTTGGATCACTTCAAGCAAGGGGTCA
AATTATTGAGAGGGCAAAGGTTCGCGAATCTTTAACGCGTGTGAACCCAG
AAAGAAATTCACTTAACAAAAGAATAAAAAGAAGAGTTTACAGTGTTCCA
TTCCCAAATGCATTATGGCACCTTGATGGGAACCATAAACTTATTAGTTG
GCGTTTTGTGATTCATGGGTGCATAGATGGGTTTTCGCGCATCATAGTTT
TCCTGAAATGTTCAACTAATAACAAATCAATTACTGTCTTAGAAAACTTT
TTGGAATCCATCCTTGAATTTTTTAAGACATGGAAAAAAGATCATGACAT
TGAAAGTTTCACTAATATTACTGATGACGAGTTGGACAATATAATTTCTG
AAATACTAGAGGCATCCCCTAATTTTGGTGAAAGGATGGTAGTTGGATCA
CTTCAAGCAAGGGGTCAAATTATTGAGAGGGCAAAGGTTCGCGAATCTTT
AACGCGTGTGAACCCAGAAAGAAATTCACTTAACAAAAGAATAAAAAGAA
GAGTTTACAGTGTTCCATTCCCAAATGCATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015414XLOC_015414Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027384-proteinTCONS_00027384-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027384-exon-sc0000620-1575043694:52354..52618TCONS_00027384-exon-sc0000620-1575043694:52354..52618Clytia hemisphaericaexon
TCONS_00027384-exon-sc0000620-1575043694:51975..52130TCONS_00027384-exon-sc0000620-1575043694:51975..52130Clytia hemisphaericaexon
TCONS_00027384-exon-sc0000620-1510915933:52354..52618TCONS_00027384-exon-sc0000620-1510915933:52354..52618Clytia hemisphaericaexon
TCONS_00027384-exon-sc0000620-1510915933:51975..52130TCONS_00027384-exon-sc0000620-1510915933:51975..52130Clytia hemisphaericaexon
TCONS_00027384-exon-sc0000620-1491911889:52354..52618TCONS_00027384-exon-sc0000620-1491911889:52354..52618Clytia hemisphaericaexon
TCONS_00027384-exon-sc0000620-1491911889:51975..52130TCONS_00027384-exon-sc0000620-1491911889:51975..52130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000620supercontigsc0000620:51975..52618 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.311208	0	0	0	2.40309	2.58233	1.29091	0.749153	0.602104	0.650134	0.707033	0.0081064	0.282811	0.367791	1.27668	0.737162	1.04879	0	1.45273	1.05247	0.588536	0	0.796485	0	0	0	0	0.167226	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top