TCONS_00027403 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027403
Unique NameTCONS_00027403
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length949

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027403 ID=TCONS_00027403|Name=TCONS_00027403|organism=Clytia hemisphaerica|type=transcript|length=949bp
ACCTTACTTTTGCTAAAGCTTACAGAATTGCAATATGATATCTATAGAGG
CATATCGTGTGTGTATAGGAAGTTTTGCTTTAACAGCTCNatgaaaacaa
aaaagcttataatgaacaaaacaaagaaaagataagtgAACATAAAAGAG
TttactacaaaagaaataagGACACTCTAAAAGAGAAGCAAAAAATTAAT
GCTCAAAAAAAAAGATCTGCTAAGCAGTCTGATGACCCAgtgaaaagatt
taaaaaaattatatatgaagGTCCTTTTTACATATGCGTTTCTTGCCACA
GATGTCTATATCGACGTTNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCGT
ATGAGACAACCTTTTTTCAGACACACCTAGATTTTGtccatctttcaaaa
aatggtattttttttcaatatccaaaTGCAGCGTTTAATTCAGGGGATCC
AAACcttatttttctcaaagttaATTATACCCTTCTATTATCAGGTGATA
TTGAACTAAACCCAGGTCCAAGATCaactaaagaaaacaaaagtgatcaa
GGGTCTGCTACGTACATTGATTTTACAGACATGACCAATTATCAAGTATC
TAAAGCTGTTTTAGGTTCCTTTAACCAGGCTAACATAGATTTATTTGGGC
AAACCGCAGGAATACAATGTAGTGCAAATTCTTTGTATGCGATATTCTGG
TCTCATTTTCGACGTGTTTCTATTTGGAAAACTACAGACCTAGATAGAAT
TTTAATTGAAGGTGATAGGTTGTATAAGTTGTTGAATACAAATGATTATT
TATCTGTCGATGAAATGCCACGATTTATCGAAACTAACGGTATTATCACC
GcacttgactttttaaatttagagaCTGGTGAAGCTAAACTAATTGATGA
CTACCCCACGCTTCAAATTCCACTGAGTACTACTGAAAGTCCTGAATTT
Run BLAST on NCBI

protein sequence of TCONS_00027403-protein

>TCONS_00027403-protein ID=TCONS_00027403-protein|Name=TCONS_00027403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MRFLPQMSISTXXXXXXXXPKSYETTFFQTHLDFVHLSKNGIFFQYPNAA
FNSGDPNLIFLKVNYTLLLSGDIELNPGPRSTKENKSDQGSATYIDFTDM
TNYQVSKAVLGSFNQANIDLFGQTAGIQCSANSLYAIFWSHFRRVSIWKT
TDLDRILIEGDRLYKLLNTNDYLSVDEMPRFIETNGIITALDFLNLETGE
AKLIDDYPTLQIPLSTTESPEF
Run BLAST on NCBI

transcript from alignment at sc0000620:105564..106512

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027403 ID=TCONS_00027403|Name=TCONS_00027403|organism=Clytia hemisphaerica|type=transcript|length=949bp|location=Sequence derived from alignment at sc0000620:105564..106512 (Clytia hemisphaerica)
AAATTCAGGACTTTCAGTAGTACTCAGTGGAATTTGAAGCGTGGGGTAGT
CATCAATTAGTTTAGCTTCACCAGtctctaaatttaaaaagtcaagtgCG
GTGATAATACCGTTAGTTTCGATAAATCGTGGCATTTCATCGACAGATAA
ATAATCATTTGTATTCAACAACTTATACAACCTATCACCTTCAATTAAAA
TTCTATCTAGGTCTGTAGTTTTCCAAATAGAAACACGTCGAAAATGAGAC
CAGAATATCGCATACAAAGAATTTGCACTACATTGTATTCCTGCGGTTTG
CCCAAATAAATCTATGTTAGCCTGGTTAAAGGAACCTAAAACAGCTTTAG
ATACTTGATAATTGGTCATGTCTGTAAAATCAATGTACGTAGCAGACCCt
tgatcacttttgttttctttagttGATCTTGGACCTGGGTTTAGTTCAAT
ATCACCTGATAATAGAAGGGTATAATtaactttgagaaaaataagGTTTG
GATCCCCTGAATTAAACGCTGCAtttggatattgaaaaaaaataccattt
tttgaaagatggaCAAAATCTAGGTGTGTCTGAAAAAAGGTTGTCTCATA
CGACTTTGGAANNNNNNNNNNNNNNNNNNNNAACGTCGATATAGACATCT
GTGGCAAGAAACGCATATGTAAAAAGGACcttcatatataatttttttaa
atcttttcacTGGGTCATCAGACTGCTTAGCAGATCTTTTTTTTTGAGCA
TTAATTTTTTGCTTCTCTTTTAGAGTGTCcttatttcttttgtagtaaAC
TCTTTTATGTTcacttatcttttctttgttttgttcattataagcttttt
tgttttcatNGAGCTGTTAAAGCAAAACTTCCTATACACACACGATATGC
CTCTATAGATATCATATTGCAATTCTGTAAGCTTTAGCAAAAGTAAGGT

Coding sequence (CDS) from alignment at sc0000620:105564..106512

>TCONS_00027403 ID=TCONS_00027403|Name=TCONS_00027403|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0000620:105564..106512 (Clytia hemisphaerica)
AAATTCAGGACTTTCAGTAGTACTCAGTGGAATTTGAAGCGTGGGGTAGT
CATCAATTAGTTTAGCTTCACCAGtctctaaatttaaaaagtcaagtgCG
GTGATAATACCGTTAGTTTCGATAAATCGTGGCATTTCATCGACAGATAA
ATAATCATTTGTATTCAACAACTTATACAACCTATCACCTTCAATTAAAA
TTCTATCTAGGTCTGTAGTTTTCCAAATAGAAACACGTCGAAAATGAGAC
CAGAATATCGCATACAAAGAATTTGCACTACATTGTATTCCTGCGGTTTG
CCCAAATAAATCTATGTTAGCCTGGTTAAAGGAACCTAAAACAGCTTTAG
ATACTTGATAATTGGTCATGTCTGTAAAATCAATGTACGTAGCAGACCCt
tgatcacttttgttttctttagttGATCTTGGACCTGGGTTTAGTTCAAT
ATCACCTGATAATAGAAGGGTATAATtaactttgagaaaaataagGTTTG
GATCCCCTGAATTAAACGCTGCAtttggatattgaaaaaaaataccattt
tttgaaagatggaCAAAATCTAGGTGTGTCTGAAAAAAGGTTGTCTCATA
CGACTTTGGAANNNNNNNNNNNNNNNNNNNNAACGTCGATATAGACATCT
GTGGCAAGAAACGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015426XLOC_015426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027403-exon-sc0000620-1491911889:105564..106512TCONS_00027403-exon-sc0000620-1491911889:105564..106512Clytia hemisphaericaexon
TCONS_00027403-exon-sc0000620-1510915933:105564..106512TCONS_00027403-exon-sc0000620-1510915933:105564..106512Clytia hemisphaericaexon
TCONS_00027403-exon-sc0000620-1575043694:105564..106512TCONS_00027403-exon-sc0000620-1575043694:105564..106512Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027403-proteinTCONS_00027403-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000620supercontigsc0000620:105564..106512 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.18215	3.35639	4.40141	3.84223	2.16502	1.06665	1.70693	2.01336	1.12451	0.916991	1.00529	2.00655	1.26317	0.539298	1.0628	0.568615	1.14979	0.555772	1.58155	0.666087	2.4518	4.52926	1.15147	0.713412	0.65266	1.54305	2.22252	2.18603	2.08472	1.35622
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006928htUSP_central_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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