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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027413 ID=TCONS_00027413|Name=TCONS_00027413|organism=Clytia hemisphaerica|type=transcript|length=850bp
ACTATGATATCATTACACAACCCACCACCCAACCAACCATTCCACCTAAC
ACTCCATCCACAAAGCCAACAACTACTACGACAACCACACAATCAGAAAC
ACGCACAACGACGACAAATCCTGAACGCACGACAAATAGCAATAATATTG
ACCATTCAAAGACATTTGACACCACCAACAAACCGACGATGACGACGCGT
TCTATCAGCGGTAGCGATACAACGACACACGAATCTTCAACAACGACGAT
CGTTATCGGCAGTTTGGTCGGCGTTGTCGTGCTTCTCAAAATCGTCATTG
TTTTGATCATTGTTTGTTGTCTCAAGAAAAGGAAAGGCgaagtaaacaaa
aacaaagcacCAGTCCGATTTCACGCTAATAATCCTGCATTCAAAGCATC
CAAACAAAGtcaacaacaacacaacaaTTATGAATATCAATACCCTGAAG
TTGGACCTGCATCGAATGTCCATCCGAACCAGCAACCGAGAACTACTGGA
TATGAGTTTGATCCTGGAGATGGAGAAAACTCACAGTATCAGCCATACCT
CAAACCGGTCACCTCATTATACGAAACCATACCTTACAACGATTGACTCT
AAACAATTATTTCTCAATGGctttttatattataatttaTTATAGGACAC
TTTAGCAAGTATAATCATCGGCCTTTTTCGATGAATTCGTGCCTCTGTTA
CATGCTTTTTTCTACCGTGATCACCAGTTTAGTTTTTTTGCAATTTAACA
tgaaacaagaagcccgttaggcgtgaaggcccagcaaaagcgaaatttac
gcgattttcgcgaatttcgagatttccaaaaattccaaaaaatgtttaac Run BLAST on NCBI protein sequence of TCONS_00027413-protein >TCONS_00027413-protein ID=TCONS_00027413-protein|Name=TCONS_00027413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
YDIITQPTTQPTIPPNTPSTKPTTTTTTTQSETRTTTTNPERTTNSNNID
HSKTFDTTNKPTMTTRSISGSDTTTHESSTTTIVIGSLVGVVVLLKIVIV
LIIVCCLKKRKGEVNKNKAPVRFHANNPAFKASKQSQQQHNNYEYQYPEV
GPASNVHPNQQPRTTGYEFDPGDGENSQYQPYLKPVTSLYETIPYND Run BLAST on NCBI transcript from alignment at sc0000626:53238..54562+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027413 ID=TCONS_00027413|Name=TCONS_00027413|organism=Clytia hemisphaerica|type=transcript|length=1325bp|location=Sequence derived from alignment at sc0000626:53238..54562+ (Clytia hemisphaerica)
ACTATGATATCATTACACAACCCACCACCCAACCAACCATTCCACCTAAC
ACTCCATCCACAAAGCCAACAACTACTACGACAACCACACAATCAGAAAC
ACGCACAACGACGACAAATCCTGAACGCACGACAAATAGCAATAATATTG
ACCATTCAAAGACATTTGACACCACCAACAAACCGACGATGACGACGCGT
TCTATCAGCGGTAGCGATACAACGACACACGAATCTTCAACAACGACGAT
CGTTATCGGCAGTTTGGTCGGCGTTGTCGTGCTTCTCAAAATCGTCATTG
TTTTGATCATTGTTTGTTGTCTCAAGAAAAGGTAAGACTATAAAAAGACa
cgatatacacgtttttttataagaatatccaaaaattgtaagccttcgga
tgctcttttttttagttttaagcctacaaatgttcttaaaatgttcttaa
ttttaccattttgtgagtattcttGTGCAATTCCCTTAGAAATTTGGTGT
ccagaaagccttaaaatgttcttaattagttcttaatatttttgcacTCG
AAGCCTTTTGTTATgctcatatagtttgttcttatataaaaggTCTAAGG
TTTTGTGCATCAAGGCCTCTCATTTTCCctgaataaaattttgaaatgta
aatTATAATAGAGGCTATGTGCTGTTTTTGTAGAAgtaatgaaaaatatt
tgttcttttctattAAACATTTAGACCGTTCATCCCTATTCTTATGTTAC
ACATCTCAAGGCATACTAACTTAGTAATGGTTTGTTATGTCTTCTGTTTC
TGTTAGGAAAGGCgaagtaaacaaaaacaaagcacCAGTCCGATTTCACG
CTAATAATCCTGCATTCAAAGCATCCAAACAAAGtcaacaacaacacaac
aaTTATGAATATCAATACCCTGAAGTTGGACCTGCATCGAATGTCCATCC
GAACCAGCAACCGAGAACTACTGGATATGAGTTTGATCCTGGAGATGGAG
AAAACTCACAGTATCAGCCATACCTCAAACCGGTCACCTCATTATACGAA
ACCATACCTTACAACGATTGACTCTAAACAATTATTTCTCAATGGctttt
tatattataatttaTTATAGGACACTTTAGCAAGTATAATCATCGGCCTT
TTTCGATGAATTCGTGCCTCTGTTACATGCTTTTTTCTACCGTGATCACC
AGTTTAGTTTTTTTGCAATTTAACAtgaaacaagaagcccgttaggcgtg
aaggcccagcaaaagcgaaatttacgcgattttcgcgaatttcgagattt
ccaaaaattccaaaaaatgtttaac Coding sequence (CDS) from alignment at sc0000626:53238..54562+ >TCONS_00027413 ID=TCONS_00027413|Name=TCONS_00027413|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0000626:53238..54562+ (Clytia hemisphaerica)
TATGATATCATTACACAACCCACCACCCAACCAACCATTCCACCTAACAC
TCCATCCACAAAGCCAACAACTACTACGACAACCACACAATCAGAAACAC
GCACAACGACGACAAATCCTGAACGCACGACAAATAGCAATAATATTGAC
CATTCAAAGACATTTGACACCACCAACAAACCGACGATGACGACGCGTTC
TATCAGCGGTAGCGATACAACGACACACGAATCTTCAACAACGACGATCG
TTATCGGCAGTTTGGTCGGCGTTGTCGTGCTTCTCAAAATCGTCATTGTT
TTGATCATTGTTTGTTGTCTCAAGAAAAGGAAAGGCgaagtaaacaaaaa
caaagcacCAGTCCGATTTCACGCTAATAATCCTGCATTCAAAGCATCCA
AACAAAGtcaacaacaacacaacaaTTATGAATATCAATACCCTGAAGTT
GGACCTGCATCGAATGTCCATCCGAACCAGCAACCGAGAACTACTGGATA
TGAGTTTGATCCTGGAGATGGAGAAAACTCACAGTATCAGCCATACCTCA
AACCGGTCACCTCATTATACGAAACCATACCTTACAACGATTGATATGAT
ATCATTACACAACCCACCACCCAACCAACCATTCCACCTAACACTCCATC
CACAAAGCCAACAACTACTACGACAACCACACAATCAGAAACACGCACAA
CGACGACAAATCCTGAACGCACGACAAATAGCAATAATATTGACCATTCA
AAGACATTTGACACCACCAACAAACCGACGATGACGACGCGTTCTATCAG
CGGTAGCGATACAACGACACACGAATCTTCAACAACGACGATCGTTATCG
GCAGTTTGGTCGGCGTTGTCGTGCTTCTCAAAATCGTCATTGTTTTGATC
ATTGTTTGTTGTCTCAAGAAAAGGAAAGGCgaagtaaacaaaaacaaagc
acCAGTCCGATTTCACGCTAATAATCCTGCATTCAAAGCATCCAAACAAA
GtcaacaacaacacaacaaTTATGAATATCAATACCCTGAAGTTGGACCT
GCATCGAATGTCCATCCGAACCAGCAACCGAGAACTACTGGATATGAGTT
TGATCCTGGAGATGGAGAAAACTCACAGTATCAGCCATACCTCAAACCGG
TCACCTCATTATACGAAACCATACCTTACAACGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027413-exon-sc0000626-1491911889:53238..53568 | TCONS_00027413-exon-sc0000626-1491911889:53238..53568 | Clytia hemisphaerica | exon |
| TCONS_00027413-exon-sc0000626-1510915933:53238..53568 | TCONS_00027413-exon-sc0000626-1510915933:53238..53568 | Clytia hemisphaerica | exon |
| TCONS_00027413-exon-sc0000626-1575043694:53238..53568 | TCONS_00027413-exon-sc0000626-1575043694:53238..53568 | Clytia hemisphaerica | exon |
| TCONS_00027413-exon-sc0000626-1491911889:54044..54562 | TCONS_00027413-exon-sc0000626-1491911889:54044..54562 | Clytia hemisphaerica | exon |
| TCONS_00027413-exon-sc0000626-1510915933:54044..54562 | TCONS_00027413-exon-sc0000626-1510915933:54044..54562 | Clytia hemisphaerica | exon |
| TCONS_00027413-exon-sc0000626-1575043694:54044..54562 | TCONS_00027413-exon-sc0000626-1575043694:54044..54562 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000626 | supercontig | sc0000626:53238..54562 + |
Blast
The following BLAST results are available for this feature:
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