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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027414 ID=TCONS_00027414|Name=TCONS_00027414|organism=Clytia hemisphaerica|type=transcript|length=589bp
caagtctgtgatcgaaaccttcatactaccaatcggcagaatATCAGTGA
GACACAGTGATATCCAGATGGTGGGTGAATatataccgagtttatcgttc
tacatcggCAATTTGTCGGGCAATTTGTTAAAAATAGgttaaaattgttt
aaaaattaaaaaaaaaagtaaaagtagaTCCAGTAGATACTTCGGCCAGT
AACTTTTTAAGGTTGGTTATTTATCTAGAGAAATTATTTCTCAATGTTTT
ATGATGTCCAACAACGCTGACATGAGATTTCTTTGTTGTGGTATGGGGGA
TGGTTCGTCGAACACATACATTGAATTTATCATTGAAGAACTGATGTTCT
GGACACTTTTTGCAGATTGGTTTTCCGTGACTGCATTGAACGAAGATGTT
TGGTTGATGATCATTGAGGCAGAATAAAGAACCATCAACTTTATGGGCAC
ATAATGAGGTTGGACCTATGACAAAAATATGTATAATTAATGTTTTTATA
AGGGGATAACACAGTGGGCCCAGAGGTGGAAATAGggaaaaaacgaaagt
taaaattttgctttattaATATAATTTATGGAATCTTGA Run BLAST on NCBI transcript from alignment at sc0000626:61598..68962+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027414 ID=TCONS_00027414|Name=TCONS_00027414|organism=Clytia hemisphaerica|type=transcript|length=7365bp|location=Sequence derived from alignment at sc0000626:61598..68962+ (Clytia hemisphaerica)
caagtctgtgatcgaaaccttcatactaccaatcggcagaatATCAGTGA
GACACAGTGATATCCAGATGGTGGGTGAATatataccgagtttatcgttc
tacatcggCAATTTGTCGGGCAATTTGTTAAAAATAGgttaaaattgttt
aaaaattaaaaaaaaaagtaaaagtagaTCCAGTAGATACTTCGGCCAGT
AACTTTTTAAGGTTGGTTATTTATCTAGAGAAATTATTTCTCAATGTTTT
ATGATGTCCAACAACGCTGACATGAGATTTCTTTGTTGTGGTATGGGGGA
TGGTTCGTCGAACACATACATTAAATTTATCATTGAAGAACTGATGTTCT
GGACACTTTTTGCAGACTGGTTTTCCGTGACTGCATTGAACGAAGATGTT
TGGCTGATGATCATTGAGGCGGAATAAAGAGCCATCAACTTTATGGGCAC
ATAATGAGGTTGGACCTATGACAAAAATATGTATAATTAATGTTTTTATA
AGGGGATAAACGTCATTTGGTAGGCTACTTCACATCTTTCCTCTTTTCAG
GCGTAAACTCCTACTTTTAAGACTTGAAGGCATGGTGTAGACATTTTTTA
ATACTTCAGAATTCAAATTTATACATGTAAAATTCGTAGTCAGTAAGATA
TTTATCTTTGTTAAGATTTGATACTTACAGTCTGAGTGAGGTACATGTGG
AACTTTAGTGGTATGTGGCTTGTGAAACTTGTGAAGTTTGATTCCTCTGA
ATAAGTCGTGAGGAGCTTTTGTCGATTTTGTGGTGTGTGGCCTAATGTGT
GTTTTGTATGGGTTGTAATGCAGAGGGGGCCAATTTGTAGTTGTTGTGGT
GGTTGTAGTACTTATTGTTGTTTTGTGTGATTGTCGAATGCAAGTTTTCG
AGAAATCACTAAATATCAATCCACGGGGACATTTCCGGCAAAAAGCTTTT
CCGTTAGAGCATTGAACGAAAATGTTACTGTGTTCTTTCAAGGCGAAAAT
TCCAGAGTCTTTGTGGTGGCAAAGTGATGACGgacctgaaaataaaataa
taaatatcaGCAGTTCATGATTTAAacataattaacaaaaataaattccg
TATTATCGTGCTCTGAAAAAATAAAGACCTAagtatttataaaaacaatg
aaagttCATATTTTCTACGACGTTTCAAAAACATTAATCTTTTCTAGTAA
TTTTCTTGGGTTTGACTAGTTTACTTTTCAATACCATAAGGGCTTAATAA
CCGGGGTTACTTTTGGTAaaatgggtgtcgggtatgtgctAGCAAGAAAG
CCCTTTCCTCGAAATTATCTCAATTTGCAATTGATTAGGAAAGATTACAA
AATCGACCACCTCGAAAATCGCTTCGTCAAAATTTCTGTCATAATTGCCC
Atcttgaattaaaattttgattaaagtttgataattttcaatttctaact
CACAAATTAGTATCCCATCTAGGGGCTAAGATAAGATCAAGCTGTTTGTA
CTTACAATCTGGGTCATCATGTGGCTTGTGTATTTTGTTTGGGTTTTGTA
CTTTGTGAAGATTGATAAgatcagagatttgggaaaagaggataagaaat
gcgctattcatccatttgaagctaggctgtagaatcttttgtttctattg
aaatgtctgcgaccgatcgattgtttttattctggaccaatcagagcgct
tgattcgttatgcgcacaagactagaagtacaaacaaaaaatggcagccg
tgattgatatcgaaagtgaaataattttttttttaaatcgcggattttga
tattttttataagcacttttcacTTTGAACGCAGTGTTTTTCAAGCCTTC
GTCGTTGTGCTTGAAGGGGAGAATTTCCCAgcttgaccaaaatattttcc
ttatagAATGATCGAATCAATTTATACATACTGTagctaaaagaattgaa
attcacattataaaaccaaaaatgaTAAGCTTGTANATTGCTCCATAGAG
GACTAAATTCAACAGATGTGTAACTCattgctaaaaaattaaatacattt
acatttgaaaaaaatattggaaaaataataTCAGCCTGTGCTCAGAAAAA
CTTGTTACATAGGTAACAACAAGTGAAAATATGTGTTCAAGTAGAAttgt
atatagaatttaaataGAAGCACTTTTGGGGTCTCCTAGTTTGTNGCTAG
AGTTTCTAAGAAACAATATCATGGAGGCCACTTCAGCCGGGTAGTGATGT
TGGGTATTAGAACAAATTGGAAACAGGACAAAAATAGAGCTCAAAAGAAA
GATAGAAAAAAGAAGCGatgataattcatgatatcaatgctaGAAGATCA
CAAATATCATGAAATCTTTCNTCACTTGTTTCATGGCTCTGATGACTTGT
TTGGACCATCTTTCCAGGGACAACCTGGATACAAAACAAACATCCAAATA
AATATAGATTCGATAAAAATTCTCCAGACTGATCAAATTTACATAATACG
TATATGGAAATCCACTTTTTCCAGAGAACATTTTCCAAGTATATGTCCAA
TTTCAAAGGATATGTAGGCGGTGCTCAACCAGGTTCAACTGTTCATATCC
ACGGTTGTCcagaaaacatttacaaaatattaatATCCTCTGCATATTTT
TATTATTCTATTCTGTTTTGGTCAAGCTAAATAATGCACGTAATGTAGTT
TCTGCaggtttaatttcatttttagcaGACTTTGCCATGCCTTAAACGTG
ACagtcaaaatgcaaaaatgttgagtcatcctgaaaatatataaaatgaa
aatctgctGTAAAACTAgggcttttttgtttttgtataagCAATAATCTG
TATGAATTACCCTAACACAGACTGTAAAGTCCACCGATGAAATTATGTTT
TGGCTGCAAAATTATCCAAGCCTTGTGAGTCAATCCACTGACCAGTCAAA
ATCATGGCCCATCAATAGTCAGACTTTATAAATATCACATGTCGAAGTTA
TTTGAACTTTACAATATTTTTGTTAGCCAAAACtttaaatttccaaccca
aaagtcAATGTTTTCCCTAGATAAAGCTAAAAGTACCACAGAGGAAATCA
AGTATACTTACTGAATCTCAAGTCCATTACCATGGAGGAAGTTTTTCTAA
GATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAAAAAT
TATGTCtgcaacacaaaaaattcattcagagcaatacaagccagaaagaa
attggtcccaatttttcaaaatttcaagcatgcctcatgtccgccatctt
tacttccagaatatagaatgattttcctcgattttctcAGGGGAAACCCC
CAGAAGATCAAAGATTCACACCCCAGTCTCTTTNNTGATACGGACCATAA
GGTTTCCACCTAGCACTACATACTAAAGAGAATGAAAGTAAATATCATAG
CATTCAGAAAACCAAGAAGTAAAACatgtacacccctgtgtcaaaaTAGA
CACTGATAAATAGACTTTGTTCTCATCCCCATTTAAAAAAAGGTATGACA
TGTGAAAAGCCTGAATAGAAAtgtcaaactttaaaatgagaTGAGAGTGC
TTACCTGCTAGCAAAGCGATGGCAATAACCAACTTCATCTTGTGTCCTTG
TTTTGTTGTCCTGTTTACTTGTTGAAATCAAGGTTTGGGATGTTTTGTAT
TATGTTTTCTCATCCATTTTATACTTTTTCACTAAGCCTTAGGATTTACA
GGGATTTCTCCTAATAATGTCAAATCAACCTTTAAGGATTACCAGCATTG
CAAACTCAGGTTAATTTTATTATTGTATCCTATCTCCATTAAGCTCTATA
AGGGATTATAGATTCTAcaaccctcgattattttttatctacaaAAAATG
TGAGTATGAAAATGTCCGATGTCAGATGTCCTCCCATCGATTAATTGAGA
GACAATCTTCTTATACGAAGTTTTGATGTTTACTAATTTCCTCCTCCACA
AGAACCTTACTATCaatattgaaaaacaatttcCTAAATGCATTTAGAGG
TTCTAATTGACCAATCTTCTAGAAAACTTCTTGGAaagagaatttaattt
tgtcttTGTCAATTACCGTCTAACATCTGctacaaaaattgcaaattaaA
GTCCCTctcaatatcttttttttaatgtcaagTGACATACCACTGTCCAG
CTCCCCTTTTCTGTAGTAGCCACTGATACAATGTATGGGTGTTGAGAGGG
TTTAGTGTTTGATCGTTAATTAAGTATTTTCAGATTGGACCTTGATACTC
CATCTTCGTATTCGACCAAAATCTTTCAcgttcaaaaaatataaactgCT
GAAGACAAACTAAATACACTCCAAGGTAAATATATCGGGCATCTGTAAAT
GAAATCATTGAAAAAGTACGGTATTGTACCAAAAATGAAGAACGAGATAC
ATATTATAACAAGGGTGTATAATTTCCCTTTGTTTTGATTCCTAAACATT
TGTTGTCTTGCTTGTTTGAACTTGATATAAATATAAATGTACATTCAAAA
GAATGAAAGGTTTGTAAAGCCAAAGTAGAGAGATTTTGGATTGTAATTGT
CCAGGCTAGAGAATCGATTCCAAccgtaaaaataatggaaagtGCCGCAA
TTAATGTTATGATCACAAGCACCCATGAAACGATAATGATAAAGAAATCC
AGGACCTTATTGCGAAACATCTTTGTAGACATAATGGAATCATCGCTGTG
AACGCCGGgattgaaaaaatgtttatgaTGTCACGTAGTAATACTTGACG
TCTTGTGTATTTTTTTAACATCGGATTGCATTCTCACGAATAATTCAGGA
TTAAAAGCCCAGTATACTGTACTAGTAATAAATAGAATACAAAGCACACT
TAATGAGGCGGATAAACTAAATAATGAtggtttcatcaaaattttggttt
gttttgaacaccgactagacggttcccgtagTCACAAACGCTGTTATTTG
GTGGAACGGATAATTTAAATAATTCAACGAAATTTCGGTttaattggaaa
aaaatatagCACCGACTGGAGAAACGTCGGTTATGTGTTGCTGAACACAC
ACAATGCTCCTAGATATAGCCATTAtcataaaatgataaaaatctatatc
tagacggttcccgtcgtcacAAACGCTGTTATTTGATAAAACGGATAAAC
TAAATAATTCGATGCTTTCAAAGAAATTTCGGTttaattggaaaaataat
ataACACCAACTGGAGAGACGCCGGTTATGTGTTGCTGAACACACACAAT
GCTCCTAGATATAGCTATCATTATGAAATATCTAACCGTCACCTGGCGTT
GCAACCTCATCCCTATGACGACTTCCTTTTTACAAATCGCCCTTGCAAAC
AACATTAGTATTCCCCTTTGATCTGTTGTTAATCGCCGACACGGGAAAGT
CAGCATTTTTTTCGTGCGGCGTCCATATGTAAATTGATGTGAATTGCACA
CTACCTGTCTGTTAAAAATACGGAAATACAAAACAATATATCGAAGTCAA
GCTTTCAGTCAATTATGAAATGTTAAAAATGTTATCCTGTTATTTTTGTA
CTAAAGACTGGGTAGgtctttttctttatcatttttGATATGGAAAAGCA
GTAGGAAATGCCTTTCTTATCCTTAACCAACAGATCATGTTTAGTCTCtg
caattttttatcttttcattttttcaacatcTGCTGTACCGTAAACGGCC
TACaacacaaatattactaggcaagtattcaacggccttgaaattaacac
gcaaaaaattaatacgaattttatttgcttttttaagGACAAAACGggtg
gttttaattaagggggtttttattaacacgaaatttttcgattcgtgtta
ataaaatgactagtaatattcatgtaataaggtaacCTGCAACACGGACT
TAACTTGCAACAGCTTCGTTTATTTACGTTTTCTCTAAGTTGATTACTTC
GTTTTCTTTCATTGTTTTCAGGGAATGTTCGAAATGGTAAACGACACGTT
AATCAAGCAAAACAAACCCAATTGAATAATTTGTTGTGAAGAATTCGGAG
TTGAAATCCGAAACTGGTACAGTTTTTCGCTCTTccgtatttttcaattt
taagttGCTGGACTTTTCACAACGAAGGGACGTTTAATTACCAATGTTTA
CCAATGTTTACATGTTAGAGATCAATTATGGAGgtataaaagaaaaacag
aagaaGCTTGCCCTACAGGATTAAAAAGTTACGAAGTTTGCATGATCATA
CTTTCATAAATCGTGTATTTTCGTTTTattttcatagcaatgaaatctgt
ttgaaaacgaggacaacaataaatttatgcatttCGAGAGGAGTGTATTC
AATATGGCTCTTAGTGTTAGGAAAATGGTTGAAAATTATATGAGTTAATT
AAATATGAGTccatcaccatatttccctaacaccctgcctggtAGTACTT
TTGATTTGAACACAGTCCATCgcggtgcaagtctgtgatcgaaaccttca
tactaccaatcggcagaatgtCAGTGAGACACAGTGATATCCAGATGGTG
GGTGAAAatataccgagtttatcgttctataTCGGCAATTTGTCGGGCAA
TTTGTTAAAAATAGgttaaaaattgtttaaaaataaaaaaaaacgtaaaa
gtaGATCCAGTAGATACTTggccggaaaatttttaaaggttggttATTTA
TCTAGagaaattttttctcaatgttTGTGATGTACACCAACGCTGACACG
TGGTTTCTTTGTTGTGGTATGGGGGATGGTTCATCGAACACATACATTGA
ATTTATCATTGAAGAACTGATGTTCTGGACACTTTTTGCAGATTGGTTTT
CCGTGACTGCATTGAACGAAGATGTTTGGTTGATGATCATTGAGGCAGAA
TAAAGAACCATCAACTTTATGGGCACATAATGAGGTTGGACCTATGACAA
AAATATGTATAATTAATGTTTTTATAAGGGGATAACACAGTGGGCCCAGA
GGTGGAAATAGggaaaaaacgaaagttaaaattttgctttattaATATAA
TTTATGGAATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027414-exon-sc0000626-1491911889:61598..61912 | TCONS_00027414-exon-sc0000626-1491911889:61598..61912 | Clytia hemisphaerica | exon |
| TCONS_00027414-exon-sc0000626-1510915933:61598..61912 | TCONS_00027414-exon-sc0000626-1510915933:61598..61912 | Clytia hemisphaerica | exon |
| TCONS_00027414-exon-sc0000626-1575043694:61598..61912 | TCONS_00027414-exon-sc0000626-1575043694:61598..61912 | Clytia hemisphaerica | exon |
| TCONS_00027414-exon-sc0000626-1491911889:68689..68962 | TCONS_00027414-exon-sc0000626-1491911889:68689..68962 | Clytia hemisphaerica | exon |
| TCONS_00027414-exon-sc0000626-1510915933:68689..68962 | TCONS_00027414-exon-sc0000626-1510915933:68689..68962 | Clytia hemisphaerica | exon |
| TCONS_00027414-exon-sc0000626-1575043694:68689..68962 | TCONS_00027414-exon-sc0000626-1575043694:68689..68962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000626 | supercontig | sc0000626:61598..68962 + |
Blast
The following BLAST results are available for this feature:
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