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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027415 ID=TCONS_00027415|Name=TCONS_00027415|organism=Clytia hemisphaerica|type=transcript|length=679bpRun BLAST on NCBI protein sequence of TCONS_00027415-protein >TCONS_00027415-protein ID=TCONS_00027415-protein|Name=TCONS_00027415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp EIKYIMMLQLFIAIYLASGCFADILDCGNGSKLSRIGCFTKNDNAPTKFIRun BLAST on NCBI transcript from alignment at sc0000626:86237..88554+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027415 ID=TCONS_00027415|Name=TCONS_00027415|organism=Clytia hemisphaerica|type=transcript|length=2318bp|location=Sequence derived from alignment at sc0000626:86237..88554+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000626:86237..88554+ >TCONS_00027415 ID=TCONS_00027415|Name=TCONS_00027415|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000626:86237..88554+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00027415 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 7.926e-20 Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 3
Query: 402 VDGKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSAFGXXXXXXXXXXXXXXXXCNNPKPA 677
+ GKW+TW++ AC+ CG G R+ TR C++P P +GG+ CEG ++ + CN+ CP +G WS WS +G C+R C G+ R R C+NP P+
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPS 4790 HSP 2 Score: 87.0409 bits (214), Expect = 5.111e-19 Identity = 44/92 (47.83%), Postives = 52/92 (56.52%), Query Frame = 3
Query: 402 VDGKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSAFGXXXXXXXXXXXXXXXXCNNPKPA 677
VDG WS WS C R CG G + TR CNNP GG+ CEG ++ CN CPV+G WS W +G C+ CG G + R CNNP PA
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPA 4676 HSP 3 Score: 86.2705 bits (212), Expect = 9.182e-19 Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 3
Query: 402 VDGKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSAFGXXXXXXXXXXXXXXXXCNNPKP 674
V G WS W G C+ CG G + R CNNP PAFGG C+G + + + CN CP++GKW+TW+++ AC+ CG G R+ TR C++P P
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVP 4732 HSP 4 Score: 82.0333 bits (201), Expect = 2.092e-17 Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 3
Query: 408 GKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSAFGXXXXXXXXXXXXXXXXCNNPKP 674
G WS WS G C+R C G+ R R C+NP P+ GG++C GP + + CN CPV+G W +W ++ C+ CG G + R C++P P
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVP 4846 HSP 5 Score: 79.7221 bits (195), Expect = 1.387e-16 Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 3
Query: 402 VDGKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSAFGXXXXXXXXXXXXXXXXCNNP 668
V G +S WSA AC+ CG G ++ +R CN P PA GGK C+G ++ +C N CPV+G WS WS + C R CG G + TR CNNP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNP 4616 The following BLAST results are available for this feature:
BLAST of TCONS_00027415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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