TCONS_00027419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027419
Unique NameTCONS_00027419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length134

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027419 ID=TCONS_00027419|Name=TCONS_00027419|organism=Clytia hemisphaerica|type=transcript|length=134bp
TCATtcgtttttcaagtttttcaagtCAACAGATGCTGTACcccataccg
ataccgataccaATATCCATTTGTGCCGCTGTTACCAAAATCGTTCAAAT
TTCAATAGTAAGCACCCAAGTAAATAAGCAACCT
Run BLAST on NCBI

transcript from alignment at sc0000626:129420..130014+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027419 ID=TCONS_00027419|Name=TCONS_00027419|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0000626:129420..130014+ (Clytia hemisphaerica)
TCATtcgtttttcaagtttttcaagtCAACAGGTATTGTGTTGATACTTT
TgggtttctctttttttttaaatcatttttgtagttttttgtaTCTGTAA
TATATTGATGCTGGAACTTCTAagagaactttttttaaagatttgcgtTT
ACTTTTTCCTATGGATATGCTGTACCCCATACCGATACCAATACCAATAT
TCATTTGTGCCGCTGTTACCGAAATCGTTCAAATTTCAATAGTAAGCACC
CAAGTAAATAAAGGTAAATACAGCAACCTAAGTAAGCTTAAAGGTTACAC
AGACACAGATAAGTATTAAGTTTTTTCTCAAACGGCGTGATTATTTTATA
CACTTGACTTGCAATTGTGCTGATACTTTtgggtttttctttttttttaa
atcatttttgtagttttttgtaTCTGTAATATATTGCGGGAACTTCTTag
agaatttttcttttaagttttGCGTTTACTTTTTCCTATGGAGATGCTGT
ACcccataccgataccgataccaATATCCATTTGTGCCGCTGTTACCAAA
ATCGTTCAAATTTCAATAGTAAGCACCCAAGTAAATAAGCAACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015439XLOC_015439Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027419-exon-sc0000626-1491911889:129420..129451TCONS_00027419-exon-sc0000626-1491911889:129420..129451Clytia hemisphaericaexon
TCONS_00027419-exon-sc0000626-1510915933:129420..129451TCONS_00027419-exon-sc0000626-1510915933:129420..129451Clytia hemisphaericaexon
TCONS_00027419-exon-sc0000626-1575043694:129420..129451TCONS_00027419-exon-sc0000626-1575043694:129420..129451Clytia hemisphaericaexon
TCONS_00027419-exon-sc0000626-1491911889:129913..130014TCONS_00027419-exon-sc0000626-1491911889:129913..130014Clytia hemisphaericaexon
TCONS_00027419-exon-sc0000626-1510915933:129913..130014TCONS_00027419-exon-sc0000626-1510915933:129913..130014Clytia hemisphaericaexon
TCONS_00027419-exon-sc0000626-1575043694:129913..130014TCONS_00027419-exon-sc0000626-1575043694:129913..130014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000626supercontigsc0000626:129420..130014 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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