TCONS_00027437 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027437
Unique NameTCONS_00027437
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1903

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027437 ID=TCONS_00027437|Name=TCONS_00027437|organism=Clytia hemisphaerica|type=transcript|length=1903bp
CTTTTATGTATTGGATGTGATATTCCTGCATGTCGCAAGCTTTGTGGATT
TTTAGGTCATGCTGCAGTCAAAGGATgctcaaaatgtgaaaaagaatTTC
CCGGTCGAAATTGTGGTGGTTTTGATAGAGATTTATGGAGAAGTAGAACA
AATGAAGGACATCGGAGGCAGATGGAGGAAATCAAGAGAGCAGAAACGAT
AGGTGAAAAACAAAGACTCGAATCCTTGTATGGTACAAGATACTCAGTCC
TCACTGAACTCCCTTATGTGGACCTAATCAAGATGTCAGTAGTTGATCCG
ATGCATAACTTATTCTTAGGAACTTCTAAACTCATGATcaagatttggaa
agaaaatggTTACCTGGATCATCATACGTTCCCAGTTCTTCAATCACGTG
TAGATTCAGCTGTTGTGTCATCAGACGTCGGAAAACTTCCAACAAAATTG
GAAAGTGGTTTTGATGGATTTACAGCCGATGAATTGAAGAATTGTACACT
TATCTACTCCATATATGCACTAAAAGGTATAATCCCTGAAGCTGATTTAG
AATGCTGGAGATTGTTCGTAATTGCATGCACCTATCTTTGTGCAAGAGTA
ATAACACTCGAAGATATTGAACTGGCAGACACGTTccttctaaggttttg
tagaagaTTCCAGCGGTTGTACACATCTGATCGAGTGACGCCAAACATCC
ACCTTCACGGACACTTAAAAGAATGTTTGCAAGAGTTTGGTCCAGTTTAT
TCGTTTTGGCTGTTTTCATTTGAAAGgTAATGAACTTCCATGACCAAAAT
CAAGTCGACAATGACTTTCACGAGTTAAAGCGTTTGTCTTGTGACTTGAT
GAATCGCAACACGAATCGTGGAACCCTCAATGATCAGTTGTCGTCTGACT
ACATTCCACATATGATGCACAGATCtcgtaattttgattttcaaaatcaa
aagtgTTGGATGGAACTTGATTACTTCCGGTTCTCGAGAAAACTTCAACC
CTACACTCTTAATGAAGAAGAGTTTCGTATGCTAAAAATGACATACTCCA
GTCTATATCCTACCGATTACCATAACCTTTTGGTTCCTCAAACAAGTTGG
AAAACCACAGAATTGGTCTATGGCGAAAATTTGCTCGGATCAGTAAAATC
CAGAAGCCATAAATCTAGCTACGTCTCTGCGTTTTGGGCATCTTCAGATG
GATCAATTCAAGCTCCTGGTGAAATGTATCTTAAACCAGTTCCTGGTCAA
ATAGTTTACTTCATCAAGCATAATGTTTTCTTTGGTGACGAGCACTATCC
CCacgtattcgctaaaattagttgGTTTCTTGAAAGTGATAAACGTGATA
TCTTTGGCAAACCAGTGGAAGTTTGGGACAATGTGCTCACAAAGCCTAAA
GGGGCGTCTTCATTTATGCCAGTGCAGCGAACATTTGCTAAATTTGTAca
ttttaaattcgaaaagaaCTGCCAAAAATTAATGGCAGTCGTTCCAAGAG
CATATTGCTTGCgtttataaatttatttaaacTCCTCTAACAACTGGTAT
AAAACACTTTAGGAGTGTGTCTTTGATATAAATGTAATGTTAATCAATTG
CTTTTGCTTACATATCACCTTGGATATGTCCATAACCTTCTTAAACCTAT
AGCTCGTACGAATTAGATAGCCTCTAGATATTTTGTTATTCTATTCACTT
TCTACTGTCAAAAGATGGAGCAGGAGTATTATTATTTTTGGGTATTATGA
ATtatatttctttacattttgcatatgacacccctgtgtcacagacccgg
tggatcCCCACCCCgttggaaaaataggccaaaaaatcgtccccagtgga
aaaaatatcttacaatttcaaccccactgcgaaattactctatgatttta
tcc
Run BLAST on NCBI

transcript from alignment at sc0000627:29643..33141+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027437 ID=TCONS_00027437|Name=TCONS_00027437|organism=Clytia hemisphaerica|type=transcript|length=3499bp|location=Sequence derived from alignment at sc0000627:29643..33141+ (Clytia hemisphaerica)
CTTTTATGTATTGGATGTGATATTCCTGCATGTCGCAAGCTTTGTGGATT
TTTAGGTAAGCTAAAAACACCTCATTATTCTATCCTAATAGAAGGGTGAG
GGAcactttttaacttttcgatatttttcagCCTACCATCAgtacattct
tattccaactccCCTTCCTTAGTTTATAAACATATGATTATATTACAAAC
TCTCCTTGCCAAattataaataatttgaaagtAAGGCCGTTGAGCGTCCT
GAAAATAGTAAGGGGccaattgaaaaaatgaaaaacgtaCATGTACACAC
CCTGTCTCAGTTCtgtttcgacgttcatctaacgttgtatggacgttatg
aatattagataaacgttgaaacaacgttgtgtgccagctggggtcgTGGG
AGGAGGAAAAATATCCACTGGTGTTGAAATTTGAgcctcttttttcattt
atgtGAATTTTGGATTATGTTTTAAGGGATTatccatggcgttctaaatc
taaaatCTAAATGGCGTACTAAAGCATTTTTGTGACACTAGTTTATTTGG
GATTCTCTTGTTATAGTACACTTCTTTTACCTGTTTCTTGCCAAGTGCAA
ATGTGCTTTTTCACCGGGGTAGCCTGGGTTCTATAATATTACACCGGGGT
GGACACagcttttatttcaatttctcaCTGGGGTTGAGATCACCATCGCT
TAGGGAAAGTTGCATTTTCACTGGGCTTaagtttaggctattttagtatT
CAAGAGGATTTTTTTTATAGGGGTGGATCTGACTAGGTCACTGATTTAGG
GGTGTATGTACGCTTTAGACTCATAAGTATTTGTATACAACTTGACTATT
TTAGGTCATGCTGCAGTCAAAGGATgctcaaaatgtgaaaaagaatTTCC
CGGTCGAAATTGTGGTGGTTTTGATAGAGATTTATGGAGAAGTAGAACAA
ATGAAGGACATCGGAGGCAGATGGAGGAAATCAAGAGAGCAGAAACGATA
GGTGAAAAACAAAGACTCGAATCCTTGTATGGTACAAGATACTCAGTCCT
CACTGAACTCCCTTATGTGGACCTAATCAAGATGTCAGTAGTTGATCCGA
TGCATAACTTATTCTTAGGTATGTATTTGCTcgatttaaaattttgttat
tctcagTAAATCGGAAGGCAATATAATGATGCTTTGGAAGCTCGAATTTC
gatagaaaaaagtttaactaatATTTCTGATTCATATTAAGTCAGAAAGT
TAATATTGGGTATTTTTATAAATGTttacttctttattttcactgttCAC
TGTATACGACAGTAGTTATTTGTTACCAGTGCAAAAATCTGGATTTCTTT
CATTAGGGCCAATCGTCGAAACCATACCTTTGCCACTCATGAGTAAAGGT
AATGTCGATGCACTAATTTCTTAAGACTTACGATTTTTTATCTAGGAACT
TCTAAACTCATGATcaagatttggaaagaaaatggTTACCTGGATCATCA
TACGTTCCCAGTTCTTCAATCACGTGTAGATTCAGCTGTTGTGTCATCAG
ACGTCGGAAAACTTCCAACAAAATTGGAAAGTGGTTTTGATGGATTTACA
GCCGATGAATTGAAGAATTGTACACTTATCTACTCCATATATGCACTAAA
AGGTATAATCCCTGAAGCTGATTTAGAATGCTGGAGATTGTTCGTAATTG
CATGCACCTATCTTTGTGCAAGAGTAATAACACTCGAAGATATTGAACTG
GCAGACACGTTccttctaaggttttgtagaagaTTCCAGCGGTTGTACAC
ATCTGATCGAGTGACGCCAAACATCCACCTTCACGGACACTTAAAAGAAT
GTTTGCAAGAGTTTGGTCCAGTTTATTCGTTTTGGCTGTTTTCATTTGAA
AGGTATAACGGTCTGTTGGGTGATTTGCCAAACAACAAGAAAAACATCGA
ATGTCAGATAATGAAGCGCTTTCTTAGAGACCATCAGGTAAATTATacga
tttttttattagaacacccaAGATTCATTCGAGGCTAGATATTCTTATGG
ATTTCCTGGATGTTCGTAAATGCTTTTCTGAACTATTTAACCTCACAAAA
TCGAGTTTTAAGAACACAACTTTGAATGGAGTTTTGTGCTTGAAAAATTC
CCTGATGAATAGTAGCGTAAATACTTGTGTGTCAATTCTTAGGCCATGGG
TCACTCACAAGATTATTATACTTTACAAAGCTTATGTCAAAAATGTctta
atgttaatgttttcaATACATTTACAATTTTACCAGCAAGTTAATTATTT
TTCTTCNcttaatgttaatgttttcaatacatttacaattttaccagcag
gttaattatttttcttcatcaggTAATGAACTTCCATGACCAAAATCAAG
TCGACAATGACTTTCACGAGTTAAAGCGTTTGTCTTGTGACTTGATGAAT
CGCAACACGAATCGTGGAACCCTCAATGATCAGTTGTCGTCTGACTACAT
TCCACATATGATGCACAGATCtcgtaattttgattttcaaaatcaaaagt
gTTGGATGGAACTTGATTACTTCCGGTTCTCGAGAAAACTTCAACCCTAC
ACTCTTAATGAAGAAGAGTTTCGTATGCTAAAAATGACATACTCCAGTCT
ATATCCTACCGATTACCATAACCTTTTGGTTCCTCAAACAAGTTGGAAAA
CCACAGAATTGGTCTATGGCGAAAATTTGCTCGGATCAGTAAAATCCAGA
AGCCATAAATCTAGCTACGTCTCTGCGTTTTGGGCATCTTCAGATGGATC
AATTCAAGCTCCTGGTGAAATGTATCTTAAACCAGTTCCTGGTCAAATAG
TTTACTTCATCAAGCATAATGTTTTCTTTGGTGACGAGCACTATCCCCac
gtattcgctaaaattagttgGTTTCTTGAAAGTGATAAACGTGATATCTT
TGGCAAACCAGTGGAAGTTTGGGACAATGTGCTCACAAAGCCTAAAGGGG
CGTCTTCATTTATGCCAGTGCAGCGAACATTTGCTAAATTTGTAcatttt
aaattcgaaaagaaCTGCCAAAAATTAATGGCAGTCGTTCCAAGAGCATA
TTGCTTGCgtttataaatttatttaaacTCCTCTAACAACTGGTATAAAA
CACTTTAGGAGTGTGTCTTTGATATAAATGTAATGTTAATCAATTGCTTT
TGCTTACATATCACCTTGGATATGTCCATAACCTTCTTAAACCTATAGCT
CGTACGAATTAGATAGCCTCTAGATATTTTGTTATTCTATTCACTTTCTA
CTGTCAAAAGATGGAGCAGGAGTATTATTATTTTTGGGTATTATGAATta
tatttctttacattttgcatatgacacccctgtgtcacagacccggtgga
tcCCCACCCCgttggaaaaataggccaaaaaatcgtccccagtggaaaaa
atatcttacaatttcaaccccactgcgaaattactctatgattttatcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015452XLOC_015452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027437-exon-sc0000627-1491911889:29643..29697TCONS_00027437-exon-sc0000627-1491911889:29643..29697Clytia hemisphaericaexon
TCONS_00027437-exon-sc0000627-1510915933:29643..29697TCONS_00027437-exon-sc0000627-1510915933:29643..29697Clytia hemisphaericaexon
TCONS_00027437-exon-sc0000627-1575043694:29643..29697TCONS_00027437-exon-sc0000627-1575043694:29643..29697Clytia hemisphaericaexon
TCONS_00027437-exon-sc0000627-1491911889:30497..30760TCONS_00027437-exon-sc0000627-1491911889:30497..30760Clytia hemisphaericaexon
TCONS_00027437-exon-sc0000627-1510915933:30497..30760TCONS_00027437-exon-sc0000627-1510915933:30497..30760Clytia hemisphaericaexon
TCONS_00027437-exon-sc0000627-1575043694:30497..30760TCONS_00027437-exon-sc0000627-1575043694:30497..30760Clytia hemisphaericaexon
TCONS_00027437-exon-sc0000627-1491911889:31088..31544TCONS_00027437-exon-sc0000627-1491911889:31088..31544Clytia hemisphaericaexon
TCONS_00027437-exon-sc0000627-1510915933:31088..31544TCONS_00027437-exon-sc0000627-1510915933:31088..31544Clytia hemisphaericaexon
TCONS_00027437-exon-sc0000627-1575043694:31088..31544TCONS_00027437-exon-sc0000627-1575043694:31088..31544Clytia hemisphaericaexon
TCONS_00027437-exon-sc0000627-1491911889:32015..33141TCONS_00027437-exon-sc0000627-1491911889:32015..33141Clytia hemisphaericaexon
TCONS_00027437-exon-sc0000627-1510915933:32015..33141TCONS_00027437-exon-sc0000627-1510915933:32015..33141Clytia hemisphaericaexon
TCONS_00027437-exon-sc0000627-1575043694:32015..33141TCONS_00027437-exon-sc0000627-1575043694:32015..33141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000627supercontigsc0000627:29643..33141 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0170625	0.218293	0	0	3.31031e-10	0.00467291	1.0548e-06	0.290452	0.470316	0.82723	0	0	0.66258	0	0.175882	0	0	0.0287429	1.096	0.425918	0	0.357469	0	0	0	0.181065	0	0.681745	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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