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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027440 ID=TCONS_00027440|Name=TCONS_00027440|organism=Clytia hemisphaerica|type=transcript|length=643bp
CTCTCAATCTACACGTTCTATTATTAGTTTTAACAAATTACCACATAAGA
TAACTGCTTTTGCAGCATTCGTTGTAATACCAAATTTAAGCTGGACTGAA
ATTAATAAAtgagttttaaaaagaaatcatttgcTAAAAGAAAACTATTC
AAATAATTGATAACCAAATATGAGGCACTATTCCTATCACTGTTATCCGA
CTTGTCAGATTGTCAtactttgaaattgaatttccTCTATTTAGCTTATT
TAATTTCTTACTTAGACAATCAGAGGAGCCATTCTTTCAATATGTGAGAG
GACCTGGaatattatttgaaaattcttcTTGCACTTATGTGATCAAGTGA
TTTATTTTGATGGATAATCAGCATTCAAAAGATGTCCAACTTGGAGAAAT
GCTGTTAACTGGATGCTGGACATATGCTGCCATACGTTGAAGTTCTTGAa
cgaaatttgaaatgataacaaCGTGATAATACTTTGAAAAGACTGCCATC
GGAGAAAGAGTAGCGTGCTATTTCGATTGATCGACGGAGAACAAATTATG
ctggaaattcgGAGCCGTTCTGGACAACCCGATTATgttcattttataga
aattttctcctggctGGCAAAAAGGAACGGCTTTTTCGTGTTT Run BLAST on NCBI transcript from alignment at sc0000627:6302..10179- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027440 ID=TCONS_00027440|Name=TCONS_00027440|organism=Clytia hemisphaerica|type=transcript|length=3878bp|location=Sequence derived from alignment at sc0000627:6302..10179- (Clytia hemisphaerica)
CTCTCAATCTACACGTTCTATTATTAGTTTTAACAAATTACCACATAAGA
TAACTGCTTTTGCAGCATTCGTTGTAATACCAAATTTAAGCTGGACTGAA
ATTAATAAATGAGTTTTAAAAAGAAATCATTTGCTAAAAGAAAACTATTC
AAATAATTGATAACCAAATATGAGGCACTATTCCTATCACTGTTATCCGA
CTTGTCAGATTGTCATACTTTGAAATTGAATTTCCTCTATTTAGCTTATT
TAATTTCTTACTTAGACAATCAGAGGAGCCATTCTTTCAATATGTGAGAG
GACCTGGAATATTATTTGAAAATTCTTCTTGCACTTATGGTAAATGAGAA
AGTGAAAAGTATGACTTATTTTAACTGCTTCTGCTTACTAGTTTGTTGTT
TAATTTGATTGTCTTGCCTACTTTTAATTGTGATTTGTTACATTCTAGTA
AACACTGCGATCTCGTTTCGGAAGTTCAAAAAACTTTTTTCGTGAATTAT
TTTCACTTTTCCTAATTGAGTGAAAGCGTTCCGTGAATTTGCTCAAGTAA
GTCAGAGTTCTTTTATAATTGTGTCTAATTGCAGAACACTTATTTCCTGA
AATAACTTATACTTCCCTTTTAATTGCGTTACTTTAGCAACCTAATTGTT
CATTCAACAAAAAGAGAAAAAACTGGAATGTGCAAATGACAGAACATTTT
TCTACCAAATTTGAATCTGTCTTTTTAAGATTGATCTTCATCGAAATAAA
ACTCAAAATTTGGGCCTTAGCGAGCTAAAATCGCAACAAAAGAAATAAGA
TTAAGAAAGAAAAAAGGTTGCTTTCTTGTAAGAGCGAAATCTATTATCGA
AAAATGTGAAAATTGAAGGTGATTTTTGTGATTAAAAAATAATCCCCCGA
CTACATACACGACTCCCCCGACTACATACACGACAAAAAATCCTTATTCT
AACGGTCAAGTTGTCGTTCAATTTTCTCGAATTTAGGTCGATATTAAAGG
TAAATCTATTTTTAAAACATCAATGCTGAAAGTAAATAAAAATCTTTTGT
TTTAAAGTCAAAATATGGAAAAGAAGCTACGCGATTGAGAAACTAACAAA
AATCAGTGTAATTATACTTCCATCAATTAAGCTAATTTTGTAGAGAGCGA
GATCGCCGTGAAATTTGTGTTCCTTTGAATGAACTACTATAGCATTTTTA
TCTACGTTTTGTTGTTACAATATTTTCAAATTGAAGGAAAAGATTGAATC
AAATATTTGTAATCTGATTAATTTTTTTTTCACTCTAGTGATCAAGTGAT
TTATTTTGATGGATAATCAGCATTCAAAAGATGTCCAACTTGGAGAAATG
GTAAAATTATTGTTTCTTGGGTTTTAATGGAATATTACATTCTGCTGGGG
GTCTCAAAAGGGGGTGGTAAATGTTTCATTTCAGGGAGATTCTGAAAAGG
AGAAAGAAGGAGAGTATGGGAAAAAAGTACTGACAAAGCTCATACTATTT
GCAGCAAATTTATTACTTAGCAGTTGAAAAATCGTGCATTATTGGTTAAC
TTACAAAGGGCTGAATCACTTTCTAAAAATTATGCATATTTTTGGCAAAA
TTTAAGAATAATGGGCTAAACGTCTCAAAGGGAGGGGCAAAAGATGTTTC
CATTTTTTGGTTTGGAAGGTAATTTTTTGGTTTACAGACATTGGAAAGGA
ACCTTTAGACCGGATGATGGAAAAAAAATTAAAATTAAATTGTTTTTTTT
TTCAAACTTGAATTAATAGTTGAGAAAATAAAAGAAATGTGTTTTGAGAT
ACCAGAAAACAACGAAAGTTTTGTAGTTGTTAACTTGTGTTAAGGCCATT
AAGGAAAGCAGTATTGGAGAGCTTTTGTTATTTCCTTTCTATCGCATCAT
ACCATATCATCTGATACGATCAGTTCCATTGATATCCTGTGTGGCCTTCT
TGGTAGAAAATTAAAACCATCCATCATGACGCCTGCTTTTAACCATGCAG
ATCACGGCTTATGATTGAAGCAAATCCCTTTCCATTTTAGCTGTTAACTG
GATGCTGGACATATGCTGCCATACGTTGAAGTTCTTGAACGAAATTTGAA
ATGATAACAACGTGATAATACTTTGAAAAGACTGCCATCGGAGAAAGAGT
AGCGTGCTATTTCGATTGATCGACGGAGAACAAATTATGGTAAACGATCG
AAAGAGACAATCCAACTTGTAATGGTTATAGATTACATGATTTTTTTTAG
AAGCATACAAAAATCCGAAAACAGGCTNNNNNNNNAGAAAGCTTGATAAG
GCTGAAAAATGCTTGAGGGGATGCTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTGAAATTCCAGCCAAAAAAGCCAAAATC
AGGAAAAAAATATTTTTTGTAGGTTCAAGCAATGCTTGCCATATGCTTAA
TTGTTCCCCATATCTGAGATATGCTTATAATTGCAATGCTTATAAAAAAA
CAGGTATTCTGCTTTCACTGAAACTTTAACTTGGGTATAAAAGACTGATT
GACAATTCAACGCAGACTATTTCATGAAGGAAGTAATGCATAATATACTC
TCGACGCCTAGATATTTTTCAATTTATTGTACTCTTATTAGATCAATATA
ATTGTATGATTATTTTGTAAAAATACATGGAAAAGATAAACCTTAATTAG
TCTATCTCGTCACCTTGGTTTGGGAGGTGACGAATATATCTGAGCCAAAA
CCGAAAATAGACCCTTAGAGAGGTAAAATTTACTTTTTTTGGGAACCCTT
GGAAAGACTTTTCCCTAAATTTGGTCGATTTTCACCAAGTTTTGTTCGAA
ATTTCTAGGAATTTTGACCCTTTCTGAGAGAAAACTCTCGATTTTTGTGA
TTTTGGAACCTTTTCCTCAGAGACTAACTTATAAATCTACACCCCATTCG
AGAGACTTTTGAGGTGTGAAAAAGATATCTTTATGGCTCGTACATACCCG
TCTCCTGTTTTGACCAAGTGCACCCGTTGGGCTTCTTTACTATGCTATCA
AAATGTTCGAATAGTGCCTTCAAAATTCCCGATAGCCAGAACATTCGGAT
TTGGAGAATTTAAATAGACTTCTAAACGTTCTAAAGTAGTGTTTTCTCCG
CAGAAGGGCCTTTTGCGAACTTTCTACTTGATTTTCGACCTTTGAATAAG
TATACGTCTGTGATAGATTCTCATGGCGTTATACTCTGCAACTATCGTCA
CTTGAAGGACTGCCAAATGCCTGAGCTAAGAGTGCTATATGCTCACCTCT
CTTCAGCTGGAAATACAGTGCCGTTCCCATTAAATACTGTAATCATTCTA
GGCAATTTCGGGACAGCTATTTTTACATTTTTATTTCCAGCTGGAAATAG
AGAGCCGTTCCCATAAAATATCTATATTGCTCTGACATTTTTCCTTTTTT
ATCTCCAGCTGGAAATAGAGAGCCGTTCCCATAACGTATCTATATTGCTC
TGACGTTTGCTACATTTATTTTCCTTTTTCATCTCCAGCTGGAAATAAAG
AGCCGTTCCTATAAAGTTGTATATCTCCTCCTGGCAAATGTGAACGGCTA
TTTTAAGGAAAAGGTCGACACTTTTTTTGAGAGAGCTGTTCCCGTGCAAT
TTGTTCCACTTTCCTGGCATATTTTTCTTTTCCAGCTGGAAATTCGGAGC
CGTTCTGGACAACCCGATTATGTTCATTTTATAGAAATTTTCTCCTGGCT
GGCAAAAAGGAACGGCTTTTTCGTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027440-exon-sc0000627-1575043694:9841..10179 | TCONS_00027440-exon-sc0000627-1575043694:9841..10179 | Clytia hemisphaerica | exon |
| TCONS_00027440-exon-sc0000627-1575043694:8830..8891 | TCONS_00027440-exon-sc0000627-1575043694:8830..8891 | Clytia hemisphaerica | exon |
| TCONS_00027440-exon-sc0000627-1575043694:7991..8139 | TCONS_00027440-exon-sc0000627-1575043694:7991..8139 | Clytia hemisphaerica | exon |
| TCONS_00027440-exon-sc0000627-1575043694:6302..6394 | TCONS_00027440-exon-sc0000627-1575043694:6302..6394 | Clytia hemisphaerica | exon |
| TCONS_00027440-exon-sc0000627-1510915933:9841..10179 | TCONS_00027440-exon-sc0000627-1510915933:9841..10179 | Clytia hemisphaerica | exon |
| TCONS_00027440-exon-sc0000627-1510915933:8830..8891 | TCONS_00027440-exon-sc0000627-1510915933:8830..8891 | Clytia hemisphaerica | exon |
| TCONS_00027440-exon-sc0000627-1510915933:7991..8139 | TCONS_00027440-exon-sc0000627-1510915933:7991..8139 | Clytia hemisphaerica | exon |
| TCONS_00027440-exon-sc0000627-1510915933:6302..6394 | TCONS_00027440-exon-sc0000627-1510915933:6302..6394 | Clytia hemisphaerica | exon |
| TCONS_00027440-exon-sc0000627-1491911889:9841..10179 | TCONS_00027440-exon-sc0000627-1491911889:9841..10179 | Clytia hemisphaerica | exon |
| TCONS_00027440-exon-sc0000627-1491911889:8830..8891 | TCONS_00027440-exon-sc0000627-1491911889:8830..8891 | Clytia hemisphaerica | exon |
| TCONS_00027440-exon-sc0000627-1491911889:7991..8139 | TCONS_00027440-exon-sc0000627-1491911889:7991..8139 | Clytia hemisphaerica | exon |
| TCONS_00027440-exon-sc0000627-1491911889:6302..6394 | TCONS_00027440-exon-sc0000627-1491911889:6302..6394 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000627 | supercontig | sc0000627:6302..10179 - |
Blast
The following BLAST results are available for this feature:
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