TCONS_00027464 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027464
Unique NameTCONS_00027464
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027464 ID=TCONS_00027464|Name=TCONS_00027464|organism=Clytia hemisphaerica|type=transcript|length=703bp
CGGCAAAACAACTGCTACAACAAATATGTGCTGAACACAAGAGTTGAGAC
GACGTGATCTCTCCAGAGCAGCGCCACGTTTGGGAGAAATGGCGCAACTC
TTTGCATCTGCTTCAGGAAATCAGCATCCAACGGTGTATCGTACCATCAG
ATTTCGGTGAAATATCGGAAGTATCATTTCATCATTTCTCCGACGCCTCG
ACGGGTGGTTACGGTCAGGTCTCCTATTCAAGACTTGTCAACGACCAAGG
GAGGATCCATTGTAGTTTCATCATTGGTAAAGCTCGAGTCGCACCCTTGA
AACCAACCACAGTACCACGATTAGAGCTGACGGCAGCAACTACATCAACC
AAGATCGCAACTCAACTCAAGAAGGAAATGACACTCGTGCCAGACTACGA
AATTTTCTGGACCGACAGCAAAGTGGTTCTTGGCTACATTTCAAATCGAG
CCAAGAAATTTCATCTCTTCGTCACGAACCGAGTTCAAGCAATCCACGAT
GGGTCCAACGTCGCGCAATTGAGATACGTACCAACTGACGACAACCCCTC
TGACGATGGTTCAAGAGGGAAAACAGTTCAAGAGTTCGTCGAAAAGCAGA
GATGGATCAATGGACCCGACTTCCTATGGCAACCAATCGAAACGAAATGC
AAAGAACAATATCAAGTCGAGGATGACGATGTCGAAGTCAAAAAGGCAAA
GCC
Run BLAST on NCBI

protein sequence of TCONS_00027464-protein

>TCONS_00027464-protein ID=TCONS_00027464-protein|Name=TCONS_00027464-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MTLVPDYEIFWTDSKVVLGYISNRAKKFHLFVTNRVQAIHDGSNVAQLRY
VPTDDNPSDDGSRGKTVQEFVEKQRWINGPDFLWQPIETKCKEQYQVEDD
DVEVKKAK
Run BLAST on NCBI

transcript from alignment at sc0000627:171164..171866

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027464 ID=TCONS_00027464|Name=TCONS_00027464|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at sc0000627:171164..171866 (Clytia hemisphaerica)
GGCTTTGCCTTTTTGACTTCGACATCGTCATCCTCGACTTGATATTGTTC
TTTGCATTTCGTTTCGATTGGTTGCCATAGGAAGTCGGGTCCATTGATCC
ATCTCTGCTTTTCGACGAACTCTTGAACTGTTTTCCCTCTTGAACCATCG
TCAGAGGGGTTGTCGTCAGTTGGTACGTATCTCAATTGCGCGACGTTGGA
CCCATCGTGGATTGCTTGAACTCGGTTCGTGACGAAGAGATGAAATTTCT
TGGCTCGATTTGAAATGTAGCCAAGAACCACTTTGCTGTCGGTCCAGAAA
ATTTCGTAGTCTGGCACGAGTGTCATTTCCTTCTTGAGTTGAGTTGCGAT
CTTGGTTGATGTAGTTGCTGCCGTCAGCTCTAATCGTGGTACTGTGGTTG
GTTTCAAGGGTGCGACTCGAGCTTTACCAATGATGAAACTACAATGGATC
CTCCCTTGGTCGTTGACAAGTCTTGAATAGGAGACCTGACCGTAACCACC
CGTCGAGGCGTCGGAGAAATGATGAAATGATACTTCCGATATTTCACCGA
AATCTGATGGTACGATACACCGTTGGATGCTGATTTCCTGAAGCAGATGC
AAAGAGTTGCGCCATTTCTCCCAAACGTGGCGCTGCTCTGGAGAGATCAC
GTCGTCTCAACTCTTGTGTTCAGCACATATTTGTTGTAGCAGTTGTTTTG
CCG

Coding sequence (CDS) from alignment at sc0000627:171164..171866

>TCONS_00027464 ID=TCONS_00027464|Name=TCONS_00027464|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000627:171164..171866 (Clytia hemisphaerica)
CTTTGCCTTTTTGACTTCGACATCGTCATCCTCGACTTGATATTGTTCTT
TGCATTTCGTTTCGATTGGTTGCCATAGGAAGTCGGGTCCATTGATCCAT
CTCTGCTTTTCGACGAACTCTTGAACTGTTTTCCCTCTTGAACCATCGTC
AGAGGGGTTGTCGTCAGTTGGTACGTATCTCAATTGCGCGACGTTGGACC
CATCGTGGATTGCTTGAACTCGGTTCGTGACGAAGAGATGAAATTTCTTG
GCTCGATTTGAAATGTAGCCAAGAACCACTTTGCTGTCGGTCCAGAAAAT
TTCGTAGTCTGGCACGAGTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015475XLOC_015475Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027464-proteinTCONS_00027464-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027464-exon-sc0000627-1491911889:171164..171866TCONS_00027464-exon-sc0000627-1491911889:171164..171866Clytia hemisphaericaexon
TCONS_00027464-exon-sc0000627-1510915933:171164..171866TCONS_00027464-exon-sc0000627-1510915933:171164..171866Clytia hemisphaericaexon
TCONS_00027464-exon-sc0000627-1575043694:171164..171866TCONS_00027464-exon-sc0000627-1575043694:171164..171866Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000627supercontigsc0000627:171164..171866 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.276763	0.86979	0	0.0931677	0.111491	0	0	0.267403	0.0605191	0	0.108123	0	0.214374	0	0	0	0.353938	0	0	0	0	0	0	0	0.643781	0.328362	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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