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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027484 ID=TCONS_00027484|Name=TCONS_00027484|organism=Clytia hemisphaerica|type=transcript|length=717bp
TGAAATGAAAACGAATGAATTTGATCCATTACTACTCTTAACTCTTTATT
TTCCAGTGGCACCGTCGATGGAACAAACCAGTTAATtataaaaggaaaat
ttcaacaaaaacacaTAGAAAACGTTCTCAAAAGATATATCAAGGAATAC
GTCACGTGTCATACATGTCGATCACCGGAGACCATCCTACATAAAGAAAC
CAGGTTGTTCTTCTTACAATGTGAGACGTGTGGATCTAAATGTTCTGTTC
AAAGTATCAAGTCTGGTTTCCAAGCTGTCACTAACAAACGTGCTCAACTC
AGAAACAAACAACCTTAGAGAGACACTGGTATTTAGGCTATATTATGTTT
ATTATTCCAGTCACCGATTTCTTTTCGCAGCAAGGTCAACGCGATTCCTT
TTATAACAGAATGTTAAATATTCCATCTTTATAGCCGGTCATCGTTACCT
TAATTTTGAGGTTATTATTTTCAGGTGAACTAGCGACTAGTCCTAAAGCA
TCGTCCTCGAAATGATatactttcaaacttttaaaaatctatctttgaGG
TATtggtaaacattttttttatgaaattcacCTTGTCATTTGCCTAAGAC
CTTCTTGTAAGAATTTTGAATTAACAATTTACTATATCtacaatttttgt
aaaatatttttacaataatTCGAAATTCGAACATAAAATATTTGTCGTTC
TTCGCACCCTTTCCTAC Run BLAST on NCBI transcript from alignment at sc0000630:189487..192381+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027484 ID=TCONS_00027484|Name=TCONS_00027484|organism=Clytia hemisphaerica|type=transcript|length=2895bp|location=Sequence derived from alignment at sc0000630:189487..192381+ (Clytia hemisphaerica)
TGAAATGAAAACGAATGAATTTGATCCATTACTACTCTTAACTCTTTATT
TTCCAGTGGCACCGTCGATGGAACAAACCAGTTAATtataaaaggaaaat
ttcaacaaaaacacaTAGAAAACGTTCTCAAAAGATATATCAGTAAGTGA
ATTTTCTTTGTGGTCTTTTTTGGAGTGACCGCTTTCGAAAAAGCTATTGG
TACCCGAAAGTAGAAACACAATAAAACCTCGACACCTTTTACAAATTACA
AAAACGTCTTCTCCATTGATGCAACGTCTTCTTTTAACGAACGGAAGTTT
TTTTGATACAGagaagaaaaacgaagaaaaagtgaaaagttcTGCTATTT
TTTTGGTTCGAAATCAAGGATTTGCATATTGAAAGTTACAACAAAAGATT
CAGTAAGGTGANTTAACGAACGGAAGTTTTTTTGATACAGagaagaaaaa
cgaagaaaaagtgaaaagttcTGCTATTTTTTTGGTTCGAAATCAAGGAT
TTGCATATTGAAAGTTACAACAAGAGATTCAGTAAGGTGACCTTCACATC
CTGAGAAAGAATTGAAaagatttgatcaaatttgAAGGAGTAACGTCCCG
GGGCgggggcgggtggtaacgcgagcaaaactatttttcgatggtcgtca
gagcaattgagaaaaaagctatactttaaagaacaaattgcttttcccag
atttttttccacatctccgcaccggaaaatcagcggaaaatttgatgcNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccagatttttttccacat
ctccgcaccggaaaatcagcggaaaatttgatgcgggcgggtgacgcgaa
tagaacaatttttcgatgaccgcctatatatatggtgagtgtactgaaat
ttcctcaaaaatagttcacaaacgtttctttcaatctttgataataattt
cccaaatagtgcctggtaaaTATCAACAAGAACACATGTTAAACAttaaa
gattaataaaaccaagtcttataaaagtacacaaagaaaaaaatatttgt
acttaCTGTCGAAGTACCATAACACAGGATCTTTAAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNgcctcagcatgtttcttagatgtttcttagttttta
ggcattctgagcctcatgtttcttaaaagtgtgtttcttaaaaaaaaacg
tgtatgtcatAAAATGTTCAAATCAGTTTACCTAAGTTTTTAATAACATG
TTTCTTGCTTACATTTACAGAGGAATACGTCACGTGTCATACATGTCGAT
CACCGGAGACCATCCTACATAAAGAAACCAGGTTGTTCTTCTTACAATGT
GAGACGTGTGGATCTAAATGTTCTGTTCAAAGTATCAAGTCTGGTTTCCA
AGCTGTCACTAACAAACGTGCTCAACTCAGAAACAAACAACCTTAGAGAG
ACACTGGTATTTAGGCTATATTATGTTTATTATTCCAGTCACCGATTTCT
TTTCGCAGCAAGGTCAACGCGATTCCTTTTATAACAGAATGTTAAATATT
CCATCTTTATAGCCGGTCATCGTTACCTTAATTTTGAGGTTATTATTTTC
AGGTGAACTAGCGACTAGTCCTAAAGCATCGTCCTCGAAATGATatactt
tcaaacttttaaaaatctatctttgaGGTATtggtaaacattttttttat
gaaattcacCTTGTCATTTGCCTAAGACCTTCTTGTAAGAATTTTGAATT
AACAATTTACTATATCtacaatttttgtaaaatatttttacaataatTCG
AAATTCGAACATAAAATATTTGTCGTTCTTCGCACCCTTTCCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027484-exon-sc0000630-1491911889:189487..189628 | TCONS_00027484-exon-sc0000630-1491911889:189487..189628 | Clytia hemisphaerica | exon |
| TCONS_00027484-exon-sc0000630-1510915933:189487..189628 | TCONS_00027484-exon-sc0000630-1510915933:189487..189628 | Clytia hemisphaerica | exon |
| TCONS_00027484-exon-sc0000630-1575043694:189487..189628 | TCONS_00027484-exon-sc0000630-1575043694:189487..189628 | Clytia hemisphaerica | exon |
| TCONS_00027484-exon-sc0000630-1491911889:191807..192381 | TCONS_00027484-exon-sc0000630-1491911889:191807..192381 | Clytia hemisphaerica | exon |
| TCONS_00027484-exon-sc0000630-1510915933:191807..192381 | TCONS_00027484-exon-sc0000630-1510915933:191807..192381 | Clytia hemisphaerica | exon |
| TCONS_00027484-exon-sc0000630-1575043694:191807..192381 | TCONS_00027484-exon-sc0000630-1575043694:191807..192381 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000630 | supercontig | sc0000630:189487..192381 + |
Blast
BLAST of TCONS_00027484 vs. Swiss-Prot (Human)
Match: IF2B (Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 8.924e-45 Identity = 70/91 (76.92%), Postives = 81/91 (89.01%), Query Frame = 1
Query: 37 LNSLFSSGTVDGTNQLIIKGKFQQKHIENVLKRYIKEYVTCHTCRSPETILHKETRLFFLQCETCGSKCSVQSIKSGFQAVTNKRAQLRNK 309
L L +SG++DG NQL+IKG+FQQK IENVL+RYIKEYVTCHTCRSP+TIL K+TRL+FLQCETC S+CSV SIK+GFQAVT KRAQLR K
Sbjct: 241 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKRAQLRAK 331
The following BLAST results are available for this feature:
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