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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027485 ID=TCONS_00027485|Name=TCONS_00027485|organism=Clytia hemisphaerica|type=transcript|length=1123bp
tagagaagttgttaaaataaaacaaatctcATGCTTATTATTTTCCAATG
GCAATTTGAAGAGTAGCTGATTGACTACTATGTCTTATATAACCAGCCCC
ACCAGACAGCCCATGCAGTAATGTCAACCGAGTAAACCTAAAAGGGTATT
TATCAAATCACATCATGGTAGCTGCTTTTTTGCCGCTGTGAAAGATGCAA
CACTGGCGAACTGAAGAATGAATTTATCAGATGAGATTTAACGTACCATC
AACCAATTTATGGGATGAACTTCATTTTCGTTGAATTGAGTTATAAAAAA
CTCTGAGAGATTACTGTGTTTTTTTAGCCCTGGTATTTCTGGTTGCTAAA
ATTAAAATTGCTCAATAATTTGGTGTTAAcgtacatgtttaaaattttag
aatGACATTTTTGTCCTGCAAACAGTTGTACATGGATCGTAGTATTTATA
CATTTGGCAAGCAAAGACACTGAAAGGATTTTTGCAATAATATGGCCAtt
gtttatatattatattggggacatcaaatgataagatttacgAGAAAATC
ACCGTGACATTTTAGTGAATTCATGTTGAAAAGCTGCAATCATTCAATAA
TTCACTCAAAAAAGCTGTGAATTGTAGAAAGGTTGCAACTTTTCACCTAG
TTTCAAtgtgaattcacTAAAAAGTCACAaggaatttttctgaatttttt
cctgtgtaccgtcaacggctctaacttgggacgagtggtcatataatggg
atggttgactttctggtatgcattttcacttactgttaaatctctctTGA
CAACAAAGTTTGTTTTGTATGAGATTTGCGactatgttaattaaatgact
ttggaggttctgtAAAAtgatggccgaattgctgtcccatgttttatcaa
actgtcccaagttagagccattGACGGTAAGTTTATCTTCAGATCTTGCA
TGCTAATTTacatcaattatattaaaaatactaatttttgCCCAAAAGTA
TAATTATTCTCCAAAAATAACACATTCAAGTTTTTGGGTTATTTCCAGAT
TTTCTAGAGGGCAGTACCGCATACAGGAGGggcacaaaatttgtgtagga
gagcagatttttatgacacagta Run BLAST on NCBI transcript from alignment at sc0000630:195712..198133+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027485 ID=TCONS_00027485|Name=TCONS_00027485|organism=Clytia hemisphaerica|type=transcript|length=2422bp|location=Sequence derived from alignment at sc0000630:195712..198133+ (Clytia hemisphaerica)
tagagaagttgttaaaataaaacaaatctcATGCTTATTATTTTCCAATG
GCAATTTGAAGAGTAGCTGATTGACTACTATGTCTTATATAACCAGCCCC
ACCAGACAGCCCATGCAGTAATGTCAACCGAGTAAACCTAAAAGGGTATT
TATCAAATCACATCATGGTAGCTGCTTTTTTGCCGCTGTGAAAGATGCAA
CACTGGCGAACTGAAGAATGAATTTATCAGATGAGATTTAACGTACCATC
AACCAATTTATGGGATGAACTTCATTTTCGTTGAATTGAGTTATAAAAAA
CTCTGAGAGATTACTGTGTTTTTTTAGCCCTGGTATTTCTGGTTGCTAAA
ATTAAAATTGCTCAATAATTTGGTGTTAAcgtacatgtttaaaattttag
aatGACATTTTTGTCCTGCAAACAGTTGTACATGGATCGTAGTATTTATA
CATTTGGCAAGCAAAGACACTGAAAGGATTTTTGCAATAATATGGCCAtt
gtttatatattatattggggacatcaaatgataagatttaagagaaaatc
accgtgacattttagtgaattcatggtgaaaagctgcaatcatTCAATAA
TTCACTCAAAAAAGCTGTGAATTGTAGAAAGGTTGCAACTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGactatgttaattaaat
gactttggaggttctgtAAAAtgatggccgaattgctgtcccatgttttt
tcagactgtcccaagttagagccattGACGGTAAGTTTATCTTCAGATCT
TGCATGCTAATTTATATacatcaattatattaaaaatactaatttttgCC
CAAAAGTATAATTATTCTCCAAAAATAACACATTCAAGTTTTTGGGTTAT
TTCCAGATTTTCTAGAGGGCAGTACCGCAGATAGGAGGggcacaaaattt
gtgtaggagagcagatttttatggcacagtaattatatttttatattatg
aatagataattactatGCCATGAAAGTCTGCTcttctacacaaattttgc
gccccttttgtctacgctactggagGGATTCTGCAAGAATCTTgtatcaa
agtcaaaaattttgcatgatGGAAATTATAATTTCGTGAAATAGTAAGAT
TTTCTGCTGGAATTGATTTTGTCAAGATTAGATTTTTTCCATTCAAGaat
actgaacaaaaaaaaataatgctaCCGTAATGGTAACAGGTAATCTTTTA
Cagagaatagaaaaaattgtaatattgaaattacattaaaggaagaattt
tggcgggaatttaatttggcatgaTGGATTTCAAGGATTAAAATTAaggt
gaaaatgtttgaaataccCCCTTTTATGACGTCTAAATAGTGAAAAAtcg
atttgagaaaatttaaattNgggagaccaagctctataatttaagaactt
tgtatgttgaggtaaattttgttttttcttaaattttgagcttggatatc
caggctaattaTACTGTggacatcaaatgataagatttacgAGAAAATCA
CCGTGACATTTTAGTGAATTCATGTTGAAAAGCTGCAATCATTCAATAAT
TCACTCAAAAAAGCTGTGAATTGTAGAAAGGTTGCAACTTTTCACCTAGT
TTCAAtgtgaattcacTAAAAAGTCACAaggaatttttctgaattttttc
ctgtgtaccgtcaacggctctaacttgggacgagtggtcatataatggga
tggttgactttctggtatgcattttcacttactgttaaatctctctTGAC
AACAAAGTTTGTTTTGTATGAGATTTGCGactatgttaattaaatgactt
tggaggttctgtAAAAtgatggccgaattgctgtcccatgttttatcaaa
ctgtcccaagttagagccattGACGGTAAGTTTATCTTCAGATCTTGCAT
GCTAATTTacatcaattatattaaaaatactaatttttgCCCAAAAGTAT
AATTATTCTCCAAAAATAACACATTCAAGTTTTTGGGTTATTTCCAGATT
TTCTAGAGGGCAGTACCGCATACAGGAGGggcacaaaatttgtgtaggag
agcagatttttatgacacagta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027485-exon-sc0000630-1491911889:195712..196233 | TCONS_00027485-exon-sc0000630-1491911889:195712..196233 | Clytia hemisphaerica | exon |
| TCONS_00027485-exon-sc0000630-1510915933:195712..196233 | TCONS_00027485-exon-sc0000630-1510915933:195712..196233 | Clytia hemisphaerica | exon |
| TCONS_00027485-exon-sc0000630-1575043694:195712..196233 | TCONS_00027485-exon-sc0000630-1575043694:195712..196233 | Clytia hemisphaerica | exon |
| TCONS_00027485-exon-sc0000630-1491911889:197533..198133 | TCONS_00027485-exon-sc0000630-1491911889:197533..198133 | Clytia hemisphaerica | exon |
| TCONS_00027485-exon-sc0000630-1510915933:197533..198133 | TCONS_00027485-exon-sc0000630-1510915933:197533..198133 | Clytia hemisphaerica | exon |
| TCONS_00027485-exon-sc0000630-1575043694:197533..198133 | TCONS_00027485-exon-sc0000630-1575043694:197533..198133 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000630 | supercontig | sc0000630:195712..198133 + |
Blast
The following BLAST results are available for this feature:
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