|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027489 ID=TCONS_00027489|Name=TCONS_00027489|organism=Clytia hemisphaerica|type=transcript|length=1829bpRun BLAST on NCBI transcript from alignment at sc0000630:157308..170019- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027489 ID=TCONS_00027489|Name=TCONS_00027489|organism=Clytia hemisphaerica|type=transcript|length=12712bp|location=Sequence derived from alignment at sc0000630:157308..170019- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00027489 vs. Swiss-Prot (Human)
Match: EMAL6 (Echinoderm microtubule-associated protein-like 6 OS=Homo sapiens GN=EML6 PE=2 SV=2) HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0 Identity = 340/572 (59.44%), Postives = 446/572 (77.97%), Query Frame = 1
Query: 112 MVDKTAPSTQLRLEWVYGYRGHQCRNNLFYTSKQEIVYFVAGVGVVYEPRYQKQRFFFGHDDDILSLALHPEGRLVATGQTGKEPYICVWDSETCKTISILKDSHQRGIACLAFSPNGMQLGSVGLEDYSQITIWDWKKGKAVATARGHSDRIFDICFNPFEEAALVTCGVKHVKMWTLSGNTLTGKKGIFGKLGEIQSVLCLAFGVGGVLYTGTLSGDIYKWQGVTLVQNISGAHAGGVFTLNATADGYASGSKDGTVALWDTEFKPITRIDLNKHSLGYSGISIRSVCWDGEKVLVGTNGGEIFEVAAADKTKPTNLIQGHAEGELWGLASHPKKLVFATASDDRTIRLWDMTSRSLIGKTAFNVTTRSAAFAPDGSTLAVGHGNGSFRVLKGRDLSELLHIHDRKEVIHELKYSPDGSLLAVGSNENSIDIYSVLEKYKRVGQCKGNSSYITHIDWSEDSAYIQTNSGAAERLFYKMPNGKRVTRKEEIESIHWQTWTSVLGAEVNGIWEKYTDTTDVNASDTNFQHGVIVTGDDFGLVKLFRFPCIKKGAKFRRYTGHSAHVTNVRFT 1827
M D+TAP QLRLEWVYGYRGHQCRNNL+YT+ +E+VYFVAGVGVVY R Q+FF GH+DDI+SLALHP+ LVATGQ GKEPYIC+WDS +T+S+LKD H G+ACLAF +G +L SVGL+ + + IWDW+KGK +A+A GHSDRIFDI ++P++ +V+CGVKH+K WTL GN LT K+GIFGK G++Q++LCLA + Y+G L+GDIY W+G+ LV+ I GAH+ G+F++ A +G+A+G +DG + LWDT+FKPIT+IDL + GY G+SIRSVCW +++L GT EIFEV ++ KP ++QGH EGELW LA HPKK + T SDDR++RLW + +LI + RS AF+PDGS LA+G +GSF VL+ RD++E++HI DRKEVIHE+K+SPDGS LAVGSN+ +D+Y+V ++YK++G+C + S+ITHIDWS DS Y+QTN GA ERLFY+MP+GK +T KEEI+ I W +WT V G EV+GIW KYT+ TD+N+ D N+ V+V+GDDFGLVKLF+FPC+K+GAKFR+Y GHSAHVTNVR++
Sbjct: 1 MADRTAPRCQLRLEWVYGYRGHQCRNNLYYTAGKEVVYFVAGVGVVYNTREHSQKFFLGHNDDIISLALHPDKTLVATGQVGKEPYICIWDSYNVQTVSLLKDVHTHGVACLAFDSDGQRLASVGLDAKNTVCIWDWRKGKLLASATGHSDRIFDISWDPYQPNRVVSCGVKHIKFWTLCGNALTAKRGIFGKTGDLQTILCLACAKEDITYSGALNGDIYVWKGLNLVRTIQGAHSAGIFSMYACEEGFATGGRDGCIRLWDTDFKPITKIDLRETEQGYKGLSIRSVCWKADRLLAGTQDSEIFEVIVRERDKPMLILQGHCEGELWALALHPKKPLAVTGSDDRSVRLWSLADHALIARCNMEEAVRSVAFSPDGSQLALGMKDGSFIVLRVRDMTEVVHIKDRKEVIHEMKFSPDGSYLAVGSNDGPVDVYAVAQRYKKIGECSKSLSFITHIDWSLDSKYLQTNDGAGERLFYRMPSGKPLTSKEEIKGIPWASWTCVKGPEVSGIWPKYTEVTDINSVDANYNSSVLVSGDDFGLVKLFKFPCLKRGAKFRKYVGHSAHVTNVRWS 572 HSP 2 Score: 533.872 bits (1374), Expect = 7.009e-170 Identity = 270/587 (46.00%), Postives = 378/587 (64.40%), Query Frame = 1
Query: 106 PDMVDKTAPSTQLRLEWVYGYRGHQCRNNLFYTSKQEIVYFVAGVGVVYEPRYQKQRFFFGHDDDILSLALHPEGRLVATGQTGKEPYICVWDSETCKTISILKDSHQRGIACLAFSPNGMQLGSVGLEDYSQITIWDWKKGKAVATARGHSDRIFDICFNPFEEAALVTCGVKHVKMWTLSGNTLTGKKGIFGKLGEIQSVLCLAFG-VGGVLYTGTLSGDIYKWQGVTLVQNISGAHAGGVFTLNATADGYASGSKDGTVALWDTEFK------PITRIDLNKHSLGY---SGISIRSVCWDGEKVLVGTNGGEIFEVAAADKTKP-TNLIQGHAEGELWGLASHPKKLVFATASDDRTIRLWDMTSR-SLIGKTAFNVTTRSAAFAPDGSTLAVGHGNGSFRVLKGRDLSELLHIHDRKEVIHELKYSPD-GSLLAVGSNENSIDIYSVLEKYKRVGQCKGNSSYITHIDWSEDSAYIQTNSGAAERLFYKMPNGKR-VTRKEEIESIHWQTWTSVLGAEVNGIWEKYTDTTDVNASDTNFQHGVIVTGDDFGLVKLFRFPCIKKGAKFRRYTGHSAHVTNVRF 1824
P + + AP L+L++++GYRG+ CRNNLFYT E+VY +A V VVY + QR + GHDDDILSL +HP VATGQ G++ I VWD++T K +S+LK HQRG+ L FS +G L SVGL+D+ I WDWKKG+ +AT RGH D+IF + NP LVT G+KH+K W +G T K+G FG +G++++++C+++G + ++++G +GDI+ W+ + L++ + AH G VF + A G+ +G KDG V LWD F+ I R L+ S G SIR++ +LVGT GEI E+ DK+ P T L+QGH EGE+WGLA+HP + AT SDD+T+R+W+++++ ++ R AF+PDG LAVG +GSF V+ + +++ H RKE+I ++K+S D G LAV S++N +DIY+VL KRVG CKG SSYITHIDW +Q NSGA E+LF++ P GKR + R EIE I W TWT VLG GIW ++D TDVNA+ ++ TGDDFG VKLF +P + A+F++Y GHSAHVTNVR+
Sbjct: 665 PFLKREKAPEDSLKLQFIHGYRGYDCRNNLFYTQAGEVVYHIAAVAVVYNRQQHSQRLYLGHDDDILSLTIHPVKDYVATGQVGRDAAIHVWDTQTLKCLSLLKGQHQRGVCALDFSADGKCLVSVGLDDFHSIVFWDWKKGEKIATTRGHKDKIFVVKCNPHHVDKLVTVGIKHIKFWQQAGGGFTSKRGTFGSVGKLETMMCVSYGRMEDLVFSGAATGDIFIWKDILLLKTVK-AHDGPVFAMYALDKGFVTGGKDGIVELWDDMFERCLKTYAIKRSALSTSSKGLLLEDNPSIRAITLGHGHILVGTKNGEILEI---DKSGPMTLLVQGHMEGEVWGLAAHPLLPICATVSDDKTLRIWELSAQHRMLAVRKLKKGGRCCAFSPDGKALAVGLNDGSFLVVNADTVEDMVSFHHRKEMISDIKFSKDTGKYLAVASHDNFVDIYNVLTS-KRVGICKGASSYITHIDWDSRGKLLQVNSGAREQLFFEAPRGKRHIIRPSEIEKIEWDTWTCVLGPTCEGIWPAHSDITDVNAASLTKDCSLLATGDDFGFVKLFSYPVKGQHARFKKYVGHSAHVTNVRW 1246 HSP 3 Score: 454.136 bits (1167), Expect = 2.675e-141 Identity = 250/580 (43.10%), Postives = 349/580 (60.17%), Query Frame = 1
Query: 139 QLRLEWVYGYRGHQCRNNLFYTSK-QEIVYFVAGVGVVYEPRYQKQRFFFGHDDDILSLAL--HPEGR-LVATGQTGKEPYICVWDSETCKTISILKDSHQRGIACLAFSPNGMQLGSVGLEDYSQITIWDWKKGKAVATARGHSDRIFDICFNPFEEAALVTCGVKHVKMWTLSGNTLTGKKGIFGKLG--EIQSVLCLAFGVGGVLYTGTLSGDIYKWQGVTLVQNISGAHAGGVFTLNATA-DGY-ASGSKD------GTVALWDTEFKPITRIDLNKHSLGYSGISIRSVCWDGEKVLVGTNGGEIFEVAAADKTKPTN-LIQGHAEGELWGLASHPKKLVFATASDDRTIRLWDMTSRSLIGKTAFNVTTRSAAFAPDGSTLAVGHGNGSFRVLKGRDLSELLHIHDRKEVIHELKYSPDGSLLAVGSNENSIDIYSVLE--KYKRVGQCKGNSSYITHIDWSEDSAYIQTNSGAAERLFYKMPNGKRVTRKEEIESIHWQTWTSVLGAEVNGIWEKYTDTTDVNASDTNFQHGVIVTGDDFGLVKLFRFPCIKKGAKFRRYTGHSAHVTNVRFT 1827
+L L+ V+GYRG CRNNL Y + +I++ A G+V Q F+ H DDIL L + HP+ R +VAT Q G P I +WD+ T T+S+L+ H +G+ + FS G L SVG++ IT+W W++G VA+ GH +RIF + F P + V+ GVKH+K WTL+G+ L KKG+ G LG ++Q++L +AFG + +TG ++GD+Y W+ L++ ++ AH G VFT+ T DG +G K+ G V LWD E K L L +RSVC K+LVGT GEI EV +K +N LI GH EGE+WGLA+HP K +F +AS+D T R+WD+ + L+ K + R AA++PDG +A+G NG F +L L DRK I +++ SPD LAVGS+E+++D Y + + R+G CK S++ +D+S D YIQ ++GA +R +++P GK+VT IE I W +WTSVLG EV GIW + D DVN + IVTGDDFGLVKLF FPC +K AK +RY GHSAHVTN+RF+
Sbjct: 1362 ELALDHVFGYRGFDCRNNLHYLNDGADIIFHTAAAGIVQNLSTGSQSFYLEHTDDILCLTVNQHPKYRNVVATSQIGTTPSIHIWDAMTKHTLSMLRCFHSKGVNYINFSATGKLLVSVGVDPEHTITVWRWQEGAKVASRGGHLERIFVVEFRPDSDTQFVSVGVKHMKFWTLAGSALLYKKGVIGSLGAAKMQTMLSVAFGANNLTFTGAINGDVYVWKDHFLIRLVAKAHTGPVFTMYTTLRDGLIVTGGKERPTKEGGAVKLWDQEMKRCRAFQLETGQLVEC---VRSVCRGKGKILVGTKDGEIIEVG--EKNAASNILIDGHMEGEIWGLATHPSKDLFISASNDGTARIWDLADKKLLNKVSLGHAARCAAYSPDGEMVAIGMKNGEFVILLVNSLKVWGKKRDRKSAIQDIRISPDNRFLAVGSSEHTVDFYDLTQGTNLNRIGYCKDIPSFVIQMDFSADGKYIQVSTGAYKRQVHEVPLGKQVTEAVVIEKITWASWTSVLGDEVIGIWPRNADKADVNCACVTHAGLNIVTGDDFGLVKLFDFPCTEKFAKHKRYFGHSAHVTNIRFS 1936 The following BLAST results are available for this feature:
BLAST of TCONS_00027489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.