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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027498 ID=TCONS_00027498|Name=TCONS_00027498|organism=Clytia hemisphaerica|type=transcript|length=989bp
CATAAATTTTCCATGAATTTCGAGTTTTTCACGTTCTTTAACTTCTTTAA
TTTGAAGATTCCTCAGATCGATCTCTTGGAGAAATCGTGGTTGGTGCAAA
TGTCTCTGAAGATGAAAGTTGTCCATTTTATCATTGTCCATGTAATAAAG
ACTATCTGTCTTCTTATGATAGCGATGAAACAACCGAAGAGTCATTGGAG
TccagtatccaatcaacttgCAGCGCTGAACCATCTCCACAAGGCGTTCA
AGCCTCTCTTAAATGGTTGATCCCAAAACAACCAGTATCTCATCCAAAGA
ACTCGAATGTCGTTGACACTGTTGGCAAATCCATTCAACAACCATCTTCT
CAAGAAGATACCGAATCTGATTCTGCCAAACCTCTTTCAAAGAAATTTGA
CAGTccaccaaaaatgttgaaaataccAGTGGAaatcaaatcacaaaaat
ccttcatcaaaacaaaaaacagtgAATATGCGGTCGGCAATGTTGTTGAT
TGTTCGAAAAAGATCAATGGACGTCCAATGTTTCCAGGTTTGGTGGTCGC
TACAATGGATGGCCCTGTTCGTATTGGTCAATCTGGTCAAATTGAGAATT
ATCAAGTCAAACCTACAAGTGTTCTCAGTGCAAAACAGGAAGCTTGCATC
TCTGCAAATTCACTGGTTGCAAAAGTTCAACAACAGCCGACCACTAGTGG
TTCCAACGTTGAAAATCAACGACAAGAAGAACCTTCAACAGATGGCATGG
ACACAAAAGAAAATTCTCTGTTCATTAGTTTGTCTGAAAGCGCTCTTCGT
TTGTTCGCTGCATATCCTTTGtatgaagataaaaatgaagatgaaacaAT
TTTCGACGAGTACAAAGAAGCAATCACACCTTCTGCCAAAAGAAAAGGGA
TTTTCAAAACCCTCAAATCAtggatgagaaagaaaatctgcCGGCTGAAT
TGTTTCAATACAACCTCAGAAACAGACACCATCAACCAG Run BLAST on NCBI protein sequence of TCONS_00027498-protein >TCONS_00027498-protein ID=TCONS_00027498-protein|Name=TCONS_00027498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MLKIPVEIKSQKSFIKTKNSEYAVGNVVDCSKKINGRPMFPGLVVATMDG
PVRIGQSGQIENYQVKPTSVLSAKQEACISANSLVAKVQQQPTTSGSNVE
NQRQEEPSTDGMDTKENSLFISLSESALRLFAAYPLYEDKNEDETIFDEY
KEAITPSAKRKGIFKTLKSWMRKKICRLNCFNTTSETDTINQ Run BLAST on NCBI transcript from alignment at sc0000630:142210..143198 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027498 ID=TCONS_00027498|Name=TCONS_00027498|organism=Clytia hemisphaerica|type=transcript|length=989bp|location=Sequence derived from alignment at sc0000630:142210..143198 (Clytia hemisphaerica)
CTGGTTGATGGTGTCTGTTTCTGAGGTTGTATTGAAACAATTCAGCCGgc
agattttctttctcatccaTGATTTGAGGGTTTTGAAAATCCCTTTTCTT
TTGGCAGAAGGTGTGATTGCTTCTTTGTACTCGTCGAAAATtgtttcatc
ttcatttttatcttcataCAAAGGATATGCAGCGAACAAACGAAGAGCGC
TTTCAGACAAACTAATGAACAGAGAATTTTCTTTTGTGTCCATGCCATCT
GTTGAAGGTTCTTCTTGTCGTTGATTTTCAACGTTGGAACCACTAGTGGT
CGGCTGTTGTTGAACTTTTGCAACCAGTGAATTTGCAGAGATGCAAGCTT
CCTGTTTTGCACTGAGAACACTTGTAGGTTTGACTTGATAATTCTCAATT
TGACCAGATTGACCAATACGAACAGGGCCATCCATTGTAGCGACCACCAA
ACCTGGAAACATTGGACGTCCATTGATCTTTTTCGAACAATCAACAACAT
TGCCGACCGCATATTcactgttttttgttttgatgaaggatttttgtgat
ttgattTCCACTggtattttcaacatttttggtggACTGTCAAATTTCTT
TGAAAGAGGTTTGGCAGAATCAGATTCGGTATCTTCTTGAGAAGATGGTT
GTTGAATGGATTTGCCAACAGTGTCAACGACATTCGAGTTCTTTGGATGA
GATACTGGTTGTTTTGGGATCAACCATTTAAGAGAGGCTTGAACGCCTTG
TGGAGATGGTTCAGCGCTGcaagttgattggatactggACTCCAATGACT
CTTCGGTTGTTTCATCGCTATCATAAGAAGACAGATAGTCTTTATTACAT
GGACAATGATAAAATGGACAACTTTCATCTTCAGAGACATTTGCACCAAC
CACGATTTCTCCAAGAGATCGATCTGAGGAATCTTCAAATTAAAGAAGTT
AAAGAACGTGAAAAACTCGAAATTCATGGAAAATTTATG Coding sequence (CDS) from alignment at sc0000630:142210..143198 >TCONS_00027498 ID=TCONS_00027498|Name=TCONS_00027498|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at sc0000630:142210..143198 (Clytia hemisphaerica)
CTGGTTGATGGTGTCTGTTTCTGAGGTTGTATTGAAACAATTCAGCCGgc
agattttctttctcatccaTGATTTGAGGGTTTTGAAAATCCCTTTTCTT
TTGGCAGAAGGTGTGATTGCTTCTTTGTACTCGTCGAAAATtgtttcatc
ttcatttttatcttcataCAAAGGATATGCAGCGAACAAACGAAGAGCGC
TTTCAGACAAACTAATGAACAGAGAATTTTCTTTTGTGTCCATGCCATCT
GTTGAAGGTTCTTCTTGTCGTTGATTTTCAACGTTGGAACCACTAGTGGT
CGGCTGTTGTTGAACTTTTGCAACCAGTGAATTTGCAGAGATGCAAGCTT
CCTGTTTTGCACTGAGAACACTTGTAGGTTTGACTTGATAATTCTCAATT
TGACCAGATTGACCAATACGAACAGGGCCATCCATTGTAGCGACCACCAA
ACCTGGAAACATTGGACGTCCATTGATCTTTTTCGAACAATCAACAACAT
TGCCGACCGCATATTcactgttttttgttttgatgaaggatttttgtgat
ttgattTCCACTggtattttcaacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027498-exon-sc0000630-1491911889:142210..143198 | TCONS_00027498-exon-sc0000630-1491911889:142210..143198 | Clytia hemisphaerica | exon |
| TCONS_00027498-exon-sc0000630-1510915933:142210..143198 | TCONS_00027498-exon-sc0000630-1510915933:142210..143198 | Clytia hemisphaerica | exon |
| TCONS_00027498-exon-sc0000630-1575043694:142210..143198 | TCONS_00027498-exon-sc0000630-1575043694:142210..143198 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000630 | supercontig | sc0000630:142210..143198 . |
Blast
The following BLAST results are available for this feature:
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