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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027522 ID=TCONS_00027522|Name=TCONS_00027522|organism=Clytia hemisphaerica|type=transcript|length=1663bp
attgaattctatcaaaagatacttttttcttcttcgtttttatttttcat
tttaaatttttcattttcatttttttattgaatcgtttttatttttcatt
ttaaatttttcattttcatttttttattgaattgtatataaaaattgttc
tctatttattttttattacttcGTTTAAGAAGGATTATTTAAACTTTTAG
TATGTAAATATTCGGCTACGCGTGTCGcgccaaaaaattttgtttatata
tgaataaattattttgattttaagtcTATTTATATAATcttactttttaa
attaaaatggaaGCTTAGGTACGTAGGCTACGATCATGTCATACTAGAAA
ACAACTAAACTATTAAacttttgcttttttaaactttttcttattACTTT
ATACTCATCGTTGTCTCAAAGTTTATCGTTTGCAACCGCTAAGTTTTGGT
GGCTCCCTTGTTTGGGATATCTTTCgagaaatattgaaataaataggGGC
TAGTTAATTctcatttaatttttctttattttgtgtCTTAAGTCGAAGAT
ATTtgaaataaagtatttatttttttaactctttttctttttgtacgtAT
AATAATAATGTCTAGAGCATTAATTCTGTCCTAATGACCATCATCTGATC
CTGCTCTCCTCCCAAATAGAGGCTGCCCAAGGAGATTATATAATGAGAAG
AGAAAAAGAGGTCAAGGAAAGGCTCGTCATATTGGAAAAAGATTGAAACG
CCACAAAACCAATGACGGGCACTTACCCTTGACCGAGGGTAGGATCAAAG
AGATGAAAGTGCTGGAGTTAAGGGAGGAGCTTAGAAGAAGGAACCTTCCG
ATGAGTGGGTTGAAGGTGGCAATCATCGAAAGGTTGCTGACGTACTGGAT
GGAGAACGAGATGGAGGAGGGGGAAGAACATGAAGgctgtagaaaaaatc
acaaTAATAATAACGATAAAGATGGTGGTGGCTCCGGGCCTGGTATGTCC
gtttaatttactttttattaatctttgtttgatattttttagatttaatt
tattaactttttaatttGACATACCCTGGgttacttcttttttttctttg
ccttTGTTCTTTCTCGTTAATCTCCGAAAAAATGACAATGGTGActgttt
taataatttttcaagtATAATCCGTTCAAAATCCAGTTTGGCCGCTTCTT
TTTCGCTTTGCTTCGCTTTACTTCGCTTTCCCTCTTGTTTTGCATGTTAT
TTTGCTGTGGTTTCTTTattgaattctatcaaaagctacttttttcttct
tcgtttttatttttcattttcatttttttattgaattgtatataaaaatt
gttctctatttattttttattacttcGTTTAAGAAGGATTATTTAAACTT
TTAGTATGTAAATATTCGGCTACGCGTGTCGcgccaaaaaattttgttta
tatatgaataaattattttgattttaagtcTATTTATATAATcttacttt
ttaaattaaaatggaaGCTTAGGTACGTAGGCTACGATCATGTCATACTA
GAAAACAACTAAACTATTAAacttttgcttttttaaactttttcttattA
CTTTATACTCATCGTTGTCTCAAAGTTTATCGTTTGCAACCGCTAAGTTT
TGGTGGCTCCCTT Run BLAST on NCBI transcript from alignment at sc0000631:185748..187531- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027522 ID=TCONS_00027522|Name=TCONS_00027522|organism=Clytia hemisphaerica|type=transcript|length=1784bp|location=Sequence derived from alignment at sc0000631:185748..187531- (Clytia hemisphaerica)
ATTGAATTCTATCAAAAGATACTTTTTTCTTCTTCGTTTTTATTTTTCAT
TTTAAATTTTTCATTTTCATTTTTTTATTGAATCGTTTTTATTTTTCATT
TTAAATTTTTCATTTTCATTTTTTTATTGAATTGTATATAAAAATTGTTC
TCTATTTATTTTTTATTACTTCGTTTAAGAAGGATTATTTAAACTTTTAG
TATGTAAATATTCGGCTACGCGTGTCGCGCCAAAAAATTTTGTTTATATA
TGAATAAATTATTTTGATTTTAAGTCTATTTATATAATCTTACTTTTTAA
ATTAAAATGGAAGCTTAGGTACGTAGGCTACGATCATGTCATACTAGAAA
ACAACTAAACTATTAAACTTTTGCTTTTTTAAACTTTTTCTTATTACTTT
ATACTCATCGTTGTCTCAAAGTTTATCGTTTGCAACCGCTAAGTTTTGGT
GGCTCCCTTGTTTGGGATATCTTTCGAGAAATATTGAAATAAATAGGGGC
TAGTTAATTCTCATTTAATTTTTCTTTATTTTGTGTCTTAAGTCGAAGAT
ATTTGAAATAAAGTATTTATTTTTTTAACTCTTTTTCTTTTTGTACGTAT
AATAATAATGTCTAGAGCATTAATTCTGTCCTAATGACCATCATCTGATC
CTGCTCTCCTCCCAAATAGAGGCTGCCCAAGGAGATTATATAATGAGAAG
AGAAAAAGAGGTCAAGGAAAGGCTCGTCATATTGGAAAAAGATTGAAACG
CCACAAAACCAATGACGGGCACTTACCCTTGACCGAGGGTAGGATCAAAG
AGATGAAAGTGCTGGAGTTAAGGGAGGAGCTTAGAAGAAGGAACCTTCCG
ATGAGTGGGTTGAAGGTGGCAATCATCGAAAGGTTGCTGGCGTACNCCCT
TGACCGAGGGTAGGATCAAAGAGATGAAAGTGCTGGAGTTAAGGGAGGAG
CTTAGAAGAAGGAACCTTCCGATGAGTGGGTTGAAGGTGGCAATCATCGA
AAGGTTGCTGACGTACTGGATGGAGAACGAGATGGAGGAGGGGGAAGAAC
ATGAAGGCTGTAGAAAAAATCACAATAATAATAACGATAAAGATGGTGGT
GGCTCCGGGCCTGGTATGTCCGTTTAATTTACTTTTTATTAATCTTTGTT
TGATATTTTTTAGATTTAATTTATTAACTTTTTAATTTGACATACCCTGG
GTTACTTCTTTTTTTTCTTTGCCTTTGTTCTTTCTCGTTAATCTCCGAAA
AAATGACAATGGTGACTGTTTTAATAATTTTTCAAGTATAATCCGTTCAA
AATCCAGTTTGGCCGCTTCTTTTTCGCTTTGCTTCGCTTTACTTCGCTTT
CCCTCTTGTTTTGCATGTTATTTTGCTGTGGTTTCTTTATTGAATTCTAT
CAAAAGCTACTTTTTTCTTCTTCGTTTTTATTTTTCATTTTCATTTTTTT
ATTGAATTGTATATAAAAATTGTTCTCTATTTATTTTTTATTACTTCGTT
TAAGAAGGATTATTTAAACTTTTAGTATGTAAATATTCGGCTACGCGTGT
CGCGCCAAAAAATTTTGTTTATATATGAATAAATTATTTTGATTTTAAGT
CTATTTATATAATCTTACTTTTTAAATTAAAATGGAAGCTTAGGTACGTA
GGCTACGATCATGTCATACTAGAAAACAACTAAACTATTAAACTTTTGCT
TTTTTAAACTTTTTCTTATTACTTTATACTCATCGTTGTCTCAAAGTTTA
TCGTTTGCAACCGCTAAGTTTTGGTGGCTCCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027522-exon-sc0000631-1575043694:186650..187531 | TCONS_00027522-exon-sc0000631-1575043694:186650..187531 | Clytia hemisphaerica | exon |
| TCONS_00027522-exon-sc0000631-1575043694:185748..186528 | TCONS_00027522-exon-sc0000631-1575043694:185748..186528 | Clytia hemisphaerica | exon |
| TCONS_00027522-exon-sc0000631-1510915933:186650..187531 | TCONS_00027522-exon-sc0000631-1510915933:186650..187531 | Clytia hemisphaerica | exon |
| TCONS_00027522-exon-sc0000631-1510915933:185748..186528 | TCONS_00027522-exon-sc0000631-1510915933:185748..186528 | Clytia hemisphaerica | exon |
| TCONS_00027522-exon-sc0000631-1491911889:186650..187531 | TCONS_00027522-exon-sc0000631-1491911889:186650..187531 | Clytia hemisphaerica | exon |
| TCONS_00027522-exon-sc0000631-1491911889:185748..186528 | TCONS_00027522-exon-sc0000631-1491911889:185748..186528 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000631 | supercontig | sc0000631:185748..187531 - |
Blast
The following BLAST results are available for this feature:
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