TCONS_00027534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027534
Unique NameTCONS_00027534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027534 ID=TCONS_00027534|Name=TCONS_00027534|organism=Clytia hemisphaerica|type=transcript|length=346bp
TCTTTTTGTAACCTTTAAGGCTTGAAAACTTATTAACAGTAAAGAAATTG
GTCTCAGACGTAGGGTTGTGTACCTCAaatttttgagagaaatttttaaa
tttacaaAGGAAGTGCAAGAAAATACAGAGTTCTCCTGTCTCTCCCTTCT
CGCgccatttttttgtaaaacagACTTGAGTATCTTATTATTCTAGCCAC
GGTTGTACAGTTGACCCGCTGGCCGCTACCCGATCGGTGACCGAACCCTC
GAATGTTTCATCGACCACGCCACAAACTAGATGTAGAAGAGGTAGAGGTT
GCTATTGTGGAGGAAGTAGAATTGATTCGTTACACTTGACTGAAGA
Run BLAST on NCBI

transcript from alignment at sc0000631:188998..189343

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027534 ID=TCONS_00027534|Name=TCONS_00027534|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at sc0000631:188998..189343 (Clytia hemisphaerica)
TCTTCAGTCAAGTGTAACGAATCAATTCTACTTCCTCCACAATAGCAACC
TCTACCTCTTCTACATCTAGTTTGTGGCGTGGTCGATGAAACATTCGAGG
GTTCGGTCACCGATCGGGTAGCGGCCAGCGGGTCAACTGTACAACCGTGG
CTAGAATAATAAGATACTCAAGTctgttttacaaaaaaatggcGCGAGAA
GGGAGAGACAGGAGAACTCTGTATTTTCTTGCACTTCCTttgtaaattta
aaaatttctctcaaaaattTGAGGTACACAACCCTACGTCTGAGACCAAT
TTCTTTACTGTTAATAAGTTTTCAAGCCTTAAAGGTTACAAAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015524XLOC_015524Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027534-exon-sc0000631-1491911889:188998..189343TCONS_00027534-exon-sc0000631-1491911889:188998..189343Clytia hemisphaericaexon
TCONS_00027534-exon-sc0000631-1510915933:188998..189343TCONS_00027534-exon-sc0000631-1510915933:188998..189343Clytia hemisphaericaexon
TCONS_00027534-exon-sc0000631-1575043694:188998..189343TCONS_00027534-exon-sc0000631-1575043694:188998..189343Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000631supercontigsc0000631:188998..189343 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.776883	1.01011	0	0.286859	2.44456	2.20769	1.66468	1.55845	0.218221	0.540605	0.524724	0.862333	0.172227	0.536578	1.02933	0.631214	1.36081	0.398509	0	0	0.500756	0.366377	0.296919	0.809829	0.35685	0.248139	0.710174	0	1.14971	0.585684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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