TCONS_00027536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027536
Unique NameTCONS_00027536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027536 ID=TCONS_00027536|Name=TCONS_00027536|organism=Clytia hemisphaerica|type=transcript|length=256bp
CGGGACAGTCGGCTCATATTGAAATATACTTCAATTTTTGTGATATAGAT
CCACACTATATATCATACTGTCATATTGTGATACAGACTGAACTATCTGA
CATCGTCTTGCCGTCTCGCCTCCACAACAAGAAGActgttttattttctt
attttctcatCCAAAGAAATTAACCAAGCTGATTGGTAAGTTTgattaaa
tgtttattttcttgCTTGCAGCTGCTAATATAGTTTACTTTTAAAAAGTG
TTGAAA
Run BLAST on NCBI

transcript from alignment at sc0000632:160664..160956+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027536 ID=TCONS_00027536|Name=TCONS_00027536|organism=Clytia hemisphaerica|type=transcript|length=293bp|location=Sequence derived from alignment at sc0000632:160664..160956+ (Clytia hemisphaerica)
CGGGACAGTCGGCTCATATTGAAATATACTTCAATTTTTGTGATATAGAT
ATTATATCAACTTAAAGACGTGGACGTGAGTGTCTACCCACACTATATAT
CATACTGTCATATTGTGATACAGACTGAACTATCTGACATCGTCTTGCCG
TCTCGCCTCCACAACAAGAAGActgttttattttcttattttctcatCCA
AAGAAATTAACCAAGCTGATTGGTAAGTTTgattaaatgtttattttctt
gCTTGCAGCTGCTAATATAGTTTACTTTTAAAAAGTGTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015526XLOC_015526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027536-exon-sc0000632-1491911889:160664..160713TCONS_00027536-exon-sc0000632-1491911889:160664..160713Clytia hemisphaericaexon
TCONS_00027536-exon-sc0000632-1510915933:160664..160713TCONS_00027536-exon-sc0000632-1510915933:160664..160713Clytia hemisphaericaexon
TCONS_00027536-exon-sc0000632-1575043694:160664..160713TCONS_00027536-exon-sc0000632-1575043694:160664..160713Clytia hemisphaericaexon
TCONS_00027536-exon-sc0000632-1491911889:160751..160956TCONS_00027536-exon-sc0000632-1491911889:160751..160956Clytia hemisphaericaexon
TCONS_00027536-exon-sc0000632-1510915933:160751..160956TCONS_00027536-exon-sc0000632-1510915933:160751..160956Clytia hemisphaericaexon
TCONS_00027536-exon-sc0000632-1575043694:160751..160956TCONS_00027536-exon-sc0000632-1575043694:160751..160956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000632supercontigsc0000632:160664..160956 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39588	1.3612	5.5317	6.18503	1.88242	0	0.897311	0.840052	0	0	0	0	0	0.482053	0	0	0	0	0	0	0	0	0	2.91015	6.74412	3.34387	0	0	0	0.789254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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