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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027573 ID=TCONS_00027573|Name=TCONS_00027573|organism=Clytia hemisphaerica|type=transcript|length=1932bpRun BLAST on NCBI protein sequence of TCONS_00027573-protein >TCONS_00027573-protein ID=TCONS_00027573-protein|Name=TCONS_00027573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=644bp SKDTPKEQRKIIFIQLEKQTNESLGLVIVGGEDSKRLTPGIYIKHIKPNSRun BLAST on NCBI transcript from alignment at sc0000635:127378..137287+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027573 ID=TCONS_00027573|Name=TCONS_00027573|organism=Clytia hemisphaerica|type=transcript|length=9910bp|location=Sequence derived from alignment at sc0000635:127378..137287+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000635:127378..137287+ >TCONS_00027573 ID=TCONS_00027573|Name=TCONS_00027573|organism=Clytia hemisphaerica|type=CDS|length=21252bp|location=Sequence derived from alignment at sc0000635:127378..137287+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027573 vs. Swiss-Prot (Human)
Match: FRPD2 (FERM and PDZ domain-containing protein 2 OS=Homo sapiens GN=FRMPD2 PE=1 SV=3) HSP 1 Score: 121.709 bits (304), Expect = 2.044e-28 Identity = 76/225 (33.78%), Postives = 114/225 (50.67%), Query Frame = 1
Query: 1045 VEIEKINGSFGFSVQGGKESNLPLGSIYVKQVYPNGAAARTKRIRDGDRLLAVNGTSLENIKHQEAVTILKEAPNKSVITFDRGIELPDEPQKEPEQPVNEEIERLR-----------------KDEKVFEVNVEKRENGLGLSLAGGKDSDVCYGEK---IMIRKLFPGYALHECGRFLVGDVILAINDQVMEGLTYQEAIAVIRTSPKMVTIIAKRPQRDEIP 1659
VE+ K +G+ GFSV GG +++P G IYVK + P G AA+ +I GDRLL V+G L + H++AV L + + +R +P Q+ P + ER D FEV ++K NGLG S + + C K + I++LFPG E G GD+ILA+N + EGL +QE + ++R +P+ VT++ RP +P
Sbjct: 951 VELVKEDGTLGFSVTGGINTSVPYGGIYVKSIVPGGPAAKEGQILQGDRLLQVDGVILCGLTHKQAVQCLTGPGQVARLVLER--RVPRSTQQCPSANDSMGDERTAVSLVTALPGRPSSCVSVTDGPKFEVKLKKNANGLGFSFV-QMEKESCSHLKSDLVRIKRLFPGQPAEENGAIAAGDIILAVNGRSTEGLIFQEVLHLLRGAPQEVTLLLCRPPPGALP 1172 The following BLAST results are available for this feature:
BLAST of TCONS_00027573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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