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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027576 ID=TCONS_00027576|Name=TCONS_00027576|organism=Clytia hemisphaerica|type=transcript|length=1557bpRun BLAST on NCBI protein sequence of TCONS_00027576-protein >TCONS_00027576-protein ID=TCONS_00027576-protein|Name=TCONS_00027576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp MVAFADDETDEEKFTRRKKRVQISGDLVEKQPRVNKIPYQDIKLGEFVGRRun BLAST on NCBI transcript from alignment at sc0000635:159224..169338+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027576 ID=TCONS_00027576|Name=TCONS_00027576|organism=Clytia hemisphaerica|type=transcript|length=10115bp|location=Sequence derived from alignment at sc0000635:159224..169338+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000635:159224..169338+ >TCONS_00027576 ID=TCONS_00027576|Name=TCONS_00027576|organism=Clytia hemisphaerica|type=CDS|length=15228bp|location=Sequence derived from alignment at sc0000635:159224..169338+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027576 vs. Swiss-Prot (Human)
Match: M3K7 (Mitogen-activated protein kinase kinase kinase 7 OS=Homo sapiens GN=MAP3K7 PE=1 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 2.994e-70 Identity = 120/288 (41.67%), Postives = 173/288 (60.07%), Query Frame = 1
Query: 169 GDLVEKQPRV---NKIPYQDIKLGEFVGRGTYGVVFQAVWNKKDVAVKSI-GDRNGSGTPKEVSILSKVQHPHIIDFYGYSEKNNHIFLVMEYADCGSLYDIIHRSNSEYGAVEYTPAHVLNWGLQCAEAMDYLHTRKPKAIIHRDLKPSNILLSHDCEIVKICDFGEARIFNTVMTAGSGTPLWMAPEVINSTKYTEKCDVYSFGIILWEMISRKKPYYDLEVEGQGIFLAVYKGLRPSTLTNVPDGLNVLMKSCWDEYAKDRPSFNELSRFLRLAFSYVHEGDEEF 1020
G+++E +V +I Y++I++ E VGRG +GVV +A W KDVA+K I + E+ LS+V HP+I+ YG N + LVMEYA+ GSLY+++H + YT AH ++W LQC++ + YLH+ +PKA+IHRDLKP N+LL ++KICDFG A T MT G+ WMAPEV + Y+EKCDV+S+GIILWE+I+R+KP+ ++ I AV+ G RP + N+P + LM CW + RPS E+ + + Y DE
Sbjct: 16 GEMIEAPSQVLNFEEIDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAEGGSLYNVLHGAEP---LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGADEPL 298 The following BLAST results are available for this feature:
BLAST of TCONS_00027576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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