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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027579 ID=TCONS_00027579|Name=TCONS_00027579|organism=Clytia hemisphaerica|type=transcript|length=1840bp
GCTGATCAGTTTTTTTTGTTCCCTgtgatttttcttataagctgtttaaa
atttcattttcgttgtgcttttgttttgatctttgaAATGAAAAGAACCC
ACCATTTCCATCAGACGCTTGTAGGAAAGGTGCTTCTTCAAATAAGTTGC
TGGACAACTTATGAGAACCAATCAAAAGTAGAGCTGGCTTTACTTTTATG
ATCCTACTTAACCATccttcattttgttttgattcaaaaGCATCAAcaga
aacaacaacaacaacaacaacaacaaaatgccTTGCTCATGTCGACAACA
ACAACGAAGAGCCAGAATCACATCTACATCAACCAATGGCAGCTTACGAA
GCCTCAACTCCTCACAATCAAGCCTTCCCGAAGAATTCGATTGCTCTTTC
TCAAGTGATGAcgtattttatcaaaacaaaacaatgacTTTACAAATGGG
ACGTTTATTAGGGTCCGGTGGATTCGGCTCTGTTTTCGAAGGACGTTGTT
CGGGACGTAAGATCGCTGTCAAGAAACTACACCACAGTCAAAAGAACCCT
AAAGCGATCGCCGAATCTTTCCACGCTGAACGAGCAGTGATGTCATTGAA
ACATAGAAACATTGTTCGAGTTCTCGCCACCACTATGCATTCAAACATCT
TCCAATCGTCGTCAGATCGTTTTGTTATTATGGAGTACGCTGGAGATcga
aatttattgagtttattAAACGATGAAAAAATACGAATCACTCGATACGA
TCGATTACGATACGCAACGGACATTGCAAATGCATTGCATTATATTCATA
AATTGAACATTGTTCATTTGGACATAAAACCAGCCAATATCATCGTAACC
ATTAAGAACACTTGTAAACTTGGTGATTTTGGATGTTGTAAAATGTTACC
AGAAAGTGGTCAAGGATCTCCCACAACTCCCACAAACTCTAGTTTGACAG
GAACATTGGCCTACACAAGTCCTGAACTACTTAAAGGTGAATTTCCAACC
AGCAAAGCTGACATGTACTCTTACGCCATTTGTTTATGGCAACTACTATC
ACGTGAAAAACCTTACGGTAACGAAAACATGTATGTCGTCATCTTTGGCG
TTGTGTCTTACAAATTACGCCCAAAAATCACGCCCAAACAACAAAGAGAC
AATAAAGCTTACATTAATTTGATTCGCTCTCTTTGGGCAGCTGATCCAGA
GCAACGCCCTTCCGCAAAGCAAGTCATGATGAAATTACGTAATCTGCGAA
AACAACCAATTAAAACTGTCAGTATCAGAAACAAAGAAAGATGGCGCATT
TGAATATGTTTGAAAGTCGTTTTTCATTTACAGTCGAACTAGATTGCCAG
AGACTATATCaaaattcaaggaaaaagtgataattttgtggatattcttg
taaaatatttattaaatagTTTATATATGATAATTGAATGTAATAATATA
atgtttaaaaaacaaaataccttATTTGCTAATATATACCAATTTTAATG
CCGtctctttttaaaatttcttttgtggtgaaaattttcttttttgacaa
gGTTTCATACTGTATTGAATACTTGGAAATGTTTCTAAAttaaatctgaa
attttttagacagctcttaattttctttttgattttctgaacatACAGAG
AtcaaatttttaaatgatttaTCTTATAGTAATTATATTATAACCTAATT
TCttcttcaactttttgtatCATAGCAGAATTTTTATATCGAACAAAACA
TTTCTTATCCTCCTTTATCATTATACTTATATTAACAGAAttgtaaaata
caaaaacatttttatgacaTTCTACTTGACTGTGAATTTC Run BLAST on NCBI transcript from alignment at sc0000635:19016..22154- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027579 ID=TCONS_00027579|Name=TCONS_00027579|organism=Clytia hemisphaerica|type=transcript|length=3139bp|location=Sequence derived from alignment at sc0000635:19016..22154- (Clytia hemisphaerica)
GCTGATCAGTTTTTTTTGTTCCCTGTGATTTTTCTTATAAGCTGTTTAAA
ATTTCATTTTCGTTGTGCTTTTGTTTTGATCTTTGAAATGAAAAGAACCC
ACCATTTCCATCAGACGCTTGTAGGAAAGGTGCTTCTTCAAATAAGTTGC
TGGACAACTTATGAGAACCAATCAAAAGTAGAGCTGGCTTTACTTTTATG
ATCCTACTTAACCATCCTTCATTTTGTTTTGATTCAAAAGCATCAACAGA
AACAACAACAACAACAACAACAACAAAATGCCTTGCTCATGTCGACAACA
ACAACGAAGAGCCAGAATCACATCTACATCAACCAATGGCAGCTTACGAA
GCCTCAACTCCTCACAATCAAGCCTTCCCGAAGAATTCGATTGCTCTTTC
TCAAGTGATGACGTATTTTATCAAAACAAAACAATGACTTTACAAATGGG
ACGTTTATTAGGGTCCGGTGGATTCGGCTCTGTTTTCGAAGGACGTTGTT
CGGGACGTAAGATCGCTGTCAAGAAACTACACCACAGTCAAAAGAACCCT
AAAGCGATCGCCGAATCTTTCCACGCTGAACGAGCAGTGATGTCATTGAA
ACATAGAAACATTGTTCGAGTTCTCGCCACCACTATGCATTCAAACATCT
TCCAATCGTCGTCAGATCGTTTTGTTATTATGGAGTACGCTGGAGATCGA
AATTTATTGAGTTTATTAAACGATGAAAAAATACGAATCACTCGATACGA
TCGATTACGATACGCAACGGACATTGCAAATGCATTGCATTATATTCATA
AATTGAACATTGTTCATTTGGACATAAAACCAGCCAATATCATCGTAACC
ATTAAGAACACTTGTAAACTTGGTGATTTTGGATGTTGTAAAATGTTACC
AGAAAGTGGTCAAGGATCTCCCACAACTCCCACAAACTCTAGTTTGACAG
GAACATTGGCCTACACAAGTCCTGAACTACTTAAAGGTATGTTAGTAATT
CATACGTCTTTTTCTGTTTTTTTTTATTCTAGCAAGCATGATATGTCTTT
GATCATCATTACTCTGATTCTAACCTTTTTGTAAAATTTGATATTCTTAT
AAAAAACAGATATAAACTATCAGTTTTCGGGCTCAACATTTAGAAGGGGA
TTAATCAACAAAAGGTTTTACGAATCTTTATCTAGCCAAATTAATCTATA
CAAAGCTTTCTGTGCAATGTGTAGTTTGATGAGCAATAAAGCCTCTTGCA
GCTAGTTGGGGCGGCTGCAAAATTCTCAGTCTTCAAAAGTTCTTTACTTT
TTCAATCAAAAGATTTAGTAGCTCAGCTGGTTTTCACAATGAAATTTCAA
ACTTTTCACAAAAGTTTTTTAACTCAAACAAGAAAAAGAATTTGAATTGA
TTTTATTTTTCTAAAAAATATTTTACTAGTTGGTAATAAAATTTTCGGGG
ACTCCTCAAATATCAAAATAACGAAATAATATCAAAACAATTCGCTGTTT
GCCTTTTTTCAAAAATATCTTTTAAAGCTACCATGTTAATATGTATTCAA
ATAGGGTTTGAAGATTTTCTAAACTGTATGGCACATAGAGCTTTGTTTTG
TCTTTTCGAAATCACATAGAGCTGTTCATGGATTGAGAAATCTTCTTTTT
TGCGGTATCTAACGAAAGAGAAAATTTGCGAAAAGAAAACAATCATAGAA
ACTTGTTGATTGTCTCTTTAACGAACGAAATTACATAGCTTCATTTTGCA
TCATCATTAATTGTGCGAAAAAAACAACTCATTGAAAATCAAGCTAATTA
CACTTGTTATGATATAATCATGTTTGTTGTTATATGAAAATTTAACCACA
ATTGAAACCTATTACAACATATTACACCAAATATTATCACATACTATCAC
TTCTCCCTTTTCCACGTTATATCACAAAAATCCTACTCAATTCAATATTT
GGATACATTTATATATTTTTTTGACAACTCCACCCAATTTTTATACCTTC
CCATGAGAAATGTTGCTATTTTTAACTCAGCAGAATTCAACAATTTACAA
AATGAATCCAATTTTCACAACGCGTTTTACATATTTTTGTATGATACATA
ATAAGTCAGCCTAAAAAGTACCCTACAGGCTATCTTCCAATATGTTATCA
CAATGAATAGCTGAAATAGAAAACTATTGTATAGGGGAGTGTATTTCCTT
TCAGCAGTGGCTGAATAGATAACTTATCTTCAGTTACCACAACAATGACC
AATTTAATTCAATTTTCAATTGTTTTTTCCTTCAGGTGAATTTCCAACCA
GCAAAGCTGACATGTACTCTTACGCCATTTGTTTATGGCAACTACTATCA
CGTGAAAAACCTTACGGTAACGAAAACATGTATGTCGTCATCTTTGGCGT
TGTGTCTTACAAATTACGCCCAAAAATCACGCCCAAACAACAAAGAGACA
ATAAAGCTTACATTAATTTGATTCGCTCTCTTTGGGCAGCTGATCCAGAG
CAACGCCCTTCCGCAAAGCAAGTCATGATGAAATTACGTAATCTGCGAAA
ACAACCAATTAAAACTGTCAGTATCAGAAACAAAGAAAGATGGCGCATTT
GAATATGTTTGAAAGTCGTTTTTCATTTACAGTCGAACTAGATTGCCAGA
GACTATATCAAAATTCAAGGAAAAAGTGATAATTTTGTGGATATTCTTGT
AAAATATTTATTAAATAGTTTATATATGATAATTGAATGTAATAATATAA
TGTTTAAAAAACAAAATACCTTATTTGCTAATATATACCAATTTTAATGC
CGTCTCTTTTTAAAATTTCTTTTGTGGTGAAAATTTTCTTTTTTGACAAG
GTTTCATACTGTATTGAATACTTGGAAATGTTTCTAAATTAAATCTGAAA
TTTTTTAGACAGCTCTTAATTTTCTTTTTGATTTTCTGAACATACAGAGA
TCAAATTTTTAAATGATTTATCTTATAGTAATTATATTATAACCTAATTT
CTTCTTCAACTTTTTGTATCATAGCAGAATTTTTATATCGAACAAAACAT
TTCTTATCCTCCTTTATCATTATACTTATATTAACAGAATTGTAAAATAC
AAAAACATTTTTATGACATTCTACTTGACTGTGAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027579-exon-sc0000635-1575043694:21169..22154 | TCONS_00027579-exon-sc0000635-1575043694:21169..22154 | Clytia hemisphaerica | exon |
| TCONS_00027579-exon-sc0000635-1575043694:19016..19869 | TCONS_00027579-exon-sc0000635-1575043694:19016..19869 | Clytia hemisphaerica | exon |
| TCONS_00027579-exon-sc0000635-1510915933:21169..22154 | TCONS_00027579-exon-sc0000635-1510915933:21169..22154 | Clytia hemisphaerica | exon |
| TCONS_00027579-exon-sc0000635-1510915933:19016..19869 | TCONS_00027579-exon-sc0000635-1510915933:19016..19869 | Clytia hemisphaerica | exon |
| TCONS_00027579-exon-sc0000635-1491911889:21169..22154 | TCONS_00027579-exon-sc0000635-1491911889:21169..22154 | Clytia hemisphaerica | exon |
| TCONS_00027579-exon-sc0000635-1491911889:19016..19869 | TCONS_00027579-exon-sc0000635-1491911889:19016..19869 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000635 | supercontig | sc0000635:19016..22154 - |
Blast
BLAST of TCONS_00027579 vs. Swiss-Prot (Human)
Match: MOS (Proto-oncogene serine/threonine-protein kinase mos OS=Homo sapiens GN=MOS PE=1 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 6.164e-47 Identity = 100/285 (35.09%), Postives = 165/285 (57.89%), Query Frame = 2
Query: 458 LGSGGFGSVFEGRCSGRKIAVKKLHHSQKNPKAIAESFHAERAVMSLKHRNIVRVLATTMHSNIFQSSSDRFVIMEYAGDRNLLSLL-----------NDEKIR----ITRYDRLRYATDIANALHYIHKLNIVHLDIKPANIIVTIKNTCKLGDFGCCKMLPE-SGQGSPTTPTNSSLTGTLAYTSPELLKGEFPTSKADMYSYAICLWQLLSREKPYGNENMYVVIFGVVSYKLRPKITPKQQRDN---KAYINLIRSLWAADPEQRPSAKQVMMKLRNLRKQ 1255
LG+GGFGSV++ G +A+K+++ KN A SF AE V L+H NIVRV+A + + S+S +IME+ G+ L ++ + R ++ L+Y+ D+ N L ++H +IVHLD+KPANI+++ ++ CK+ DFGC + L + +P+ P L GT + +PELLKGE T KAD+YS+AI LWQ+ +++ PY E + +++ VV+Y LRP ++ D+ + ++I+ W QRPSA+ +++ L +L+ +
Sbjct: 66 LGAGGFGSVYKATYRGVPVAIKQVNKCTKNRLASRRSFWAELNVARLRHDNIVRVVAASTRTPA-GSNSLGTIIMEFGGNVTLHQVIYGAAGHPEGDAGEPHCRTGGQLSLGKCLKYSLDVVNGLLFLHSQSIVHLDLKPANILISEQDVCKISDFGCSEKLEDLLCFQTPSYP----LGGTYTHRAPELLKGEGVTPKADIYSFAITLWQMTTKQAPYSGERQH-ILYAVVAYDLRPSLSAAVFEDSLPGQRLGDVIQRCWRPSAAQRPSARLLLVDLTSLKAE 344
The following BLAST results are available for this feature:
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