TCONS_00027580 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027580
Unique Name	TCONS_00027580
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1635

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000635:19016..31206-
coding sequence from alignment at sc0000635:19016..31206-

transcript sequence

>TCONS_00027580 ID=TCONS_00027580|Name=TCONS_00027580|organism=Clytia hemisphaerica|type=transcript|length=1635bp
CACCAAGAACGTTCAggactgaaaaaaagaagaaaCATCAAcagaaacaa
caacaacaacaacaacaacaaaatgccTTGCTCATGTCGACAACAACAAC
GAAGAGCCAGAATCACATCTACATCAACCAATGGCAGCTTACGAAGCCTC
AACTCCTCACAATCAAGCCTTCCCGAAGAATTCGATTGCTCTTTCTCAAG
TGATGAcgtattttatcaaaacaaaacaatgacTTTACAAATGGGACGTT
TATTAGGGTCCGGTGGATTCGGCTCTGTTTTCGAAGGACGTTGTTCGGGA
CGTAAGATCGCTGTCAAGAAACTACACCACAGTCAAAAGAACCCTAAAGC
GATCGCCGAATCTTTCCACGCTGAACGAGCAGTGATGTCATTGAAACATA
GAAACATTGTTCGAGTTCTCGCCACCACTATGCATTCAAACATCTTCCAA
TCGTCGTCAGATCGTTTTGTTATTATGGAGTACGCTGGAGATcgaaattt
attgagtttattAAACGATGAAAAAATACGAATCACTCGATACGATCGAT
TACGATACGCAACGGACATTGCAAATGCATTGCATTATATTCATAAATTG
AACATTGTTCATTTGGACATAAAACCAGCCAATATCATCGTAACCATTAA
GAACACTTGTAAACTTGGTGATTTTGGATGTTGTAAAATGTTACCAGAAA
GTGGTCAAGGATCTCCCACAACTCCCACAAACTCTAGTTTGACAGGAACA
TTGGCCTACACAAGTCCTGAACTACTTAAAGGTGAATTTCCAACCAGCAA
AGCTGACATGTACTCTTACGCCATTTGTTTATGGCAACTACTATCACGTG
AAAAACCTTACGGTAACGAAAACATGTATGTCGTCATCTTTGGCGTTGTG
TCTTACAAATTACGCCCAAAAATCACGCCCAAACAACAAAGAGACAATAA
AGCTTACATTAATTTGATTCGCTCTCTTTGGGCAGCTGATCCAGAGCAAC
GCCCTTCCGCAAAGCAAGTCATGATGAAATTACGTAATCTGCGAAAACAA
CCAATTAAAACTGTCAGTATCAGAAACAAAGAAAGATGGCGCATTTGAAT
ATGTTTGAAAGTCGTTTTTCATTTACAGTCGAACTAGATTGCCAGAGACT
ATATCaaaattcaaggaaaaagtgataattttgtggatattcttgtaaaa
tatttattaaatagTTTATATATGATAATTGAATGTAATAATATAatgtt
taaaaaacaaaataccttATTTGCTAATATATACCAATTTTAATGCCGtc
tctttttaaaatttcttttgtggtgaaaattttcttttttgacaagGTTT
CATACTGTATTGAATACTTGGAAATGTTTCTAAAttaaatctgaaatttt
ttagacagctcttaattttctttttgattttctgaacatACAGAGAtcaa
atttttaaatgatttaTCTTATAGTAATTATATTATAACCTAATTTCttc
ttcaactttttgtatCATAGCAGAATTTTTATATCGAACAAAACATTTCT
TATCCTCCTTTATCATTATACTTATATTAACAGAAttgtaaaatacaaaa
acatttttatgacaTTCTACTTGACTGTGAATTTC

Run BLAST on NCBI

protein sequence of Mos3 protein

>TCONS_00027580-protein ID=TCONS_00027580-protein|Name=Mos3 protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
HQERSGLKKRRNINRNNNNNNNNKMPCSCRQQQRRARITSTSTNGSLRSL
NSSQSSLPEEFDCSFSSDDVFYQNKTMTLQMGRLLGSGGFGSVFEGRCSG
RKIAVKKLHHSQKNPKAIAESFHAERAVMSLKHRNIVRVLATTMHSNIFQ
SSSDRFVIMEYAGDRNLLSLLNDEKIRITRYDRLRYATDIANALHYIHKL
NIVHLDIKPANIIVTIKNTCKLGDFGCCKMLPESGQGSPTTPTNSSLTGT
LAYTSPELLKGEFPTSKADMYSYAICLWQLLSREKPYGNENMYVVIFGVV
SYKLRPKITPKQQRDNKAYINLIRSLWAADPEQRPSAKQVMMKLRNLRKQ
PIKTVSIRNKERWRI

Run BLAST on NCBI

transcript from alignment at sc0000635:19016..31206-

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027580 ID=TCONS_00027580|Name=TCONS_00027580|organism=Clytia hemisphaerica|type=transcript|length=12191bp|location=Sequence derived from alignment at sc0000635:19016..31206- (Clytia hemisphaerica)
CACCAAGAACGTTCAGGACTGAAAAAAAGAAGAAAGTAGGTATCGTATTT
TTCATATTTAACGTTTTCTTGATATTAGATTTTGTTCATTTAGCGATTTA
GCATTTCTTGAAGAAGAATCACATATTCGTGAATTTTTCCCCTGTTCATT
GAATAGAAAATAGCATGTAACAGATGCACGAATCCTATTTTTCTTCCAAT
GAGTAAAATGAAAGCTATACGTAGACTTGTTATCATTTTTGTTTCGAGCT
GGTTAAAGAAAACCGCAGACCATTTACATATAATACTAGTCATAGCTTTC
ACTAAATGCCCCCACATAAAGATCATGTCATGCACTTATAAAGCTTTAAT
GCTTTAAATATTAAACATTAAAAAATANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCAACAACAACAAAACAATTCGCAAAATTTTGAGATTCCAGTCCAATATC
TATGCGTGAAACTATGAGAGCCTCCTCGTCGCTACGCTCCTGCGGGGGCA
ATAACACCCCTGTCTCACAACCCCGGTGGAACTTTTTTCCTCAGTGGGGA
CAATTTGTATTGAAATCTCAATCAGGATAGAAATTCTAGTGCTCCAAGGC
CAGTGGGAGCGGTTTTGGAGTGCAATTTTTAAGCACTGAGTTTTGAGCAG
GGATGAATTAAAACCCAATTTCCGAGTGGGGCTGAGATTCCAGGGTATTT
TTCGGGTATTTTCCCACTGCAAAATTTTTGTCTCATTTTCTAGTGGGACA
GAGGGGTGTCCTATATTTCAGAAACGCGGATAAAAAAGTAATCTGATTCA
GATATACACATTTTTTATGAGAACATCCAAAACTTTTGTCTGTACACAAA
CCCAATATCTACGGCTAATTTCAAAATTCATTGCCGTAGAGAACTACGCT
ACGATAATCGTGAGATACACTCTGGTACAGAGTACCAAAACTTACGATGC
CTTCGGTTTCTTAGCTTTCTGAGTTTTAAGCCTAGAAATCTTTTTTTTAT
TTTCACCATATTTTTTGAGTATTTATGTCCATTTTGTGTTTTAGAGTTCG
CGAAGCCTTAAAATGTTCGTAACTTGTTCTTAATATTTGGCCGTTGAAGC
CTTATGTTCTTATATAGCTTGTTCTTATAAAAACCTGTACCAAGCCTCAG
ATCTGTAAGGTTATGAACAAGGTTATAAATTGCGTGTGTGAATTCTGAGC
TTATAAAATCTTTTCACCATGACTGAAAACAAGAAATTTACTGAAAAGCG
GCCCCTGCCCTGTTCGTTATTGTTCGCTTTTTCAGCCATGGTGGAAGGTC
AGTGCAGTGCAGTACATGCTCGCTTTTTTAAAGGGTGGGGTTGGCCTTCA
CTAATGTACATCTCTCTCAAAAACAAATTCATGGATGGGATTGGTTGTTA
CAGATAAAAATTTTCGGCTTTCGATGTTTGTTTGTGAAAGGAGTCCCAAG
AGAAGGAAGAAAAAAATCATCGCGATATGACAAAGGAGAAGAAAGTTTGC
ATACCATTATATCTTTTCACACATTTTGGTGAAAAAGAAACTATAATATT
TTCTACTGATGCCATCTAATTTCTCGCAAAATCATGTTTTGTTTGACTCA
GCTGCCAGACGCTAGTTTGCAAGGTTGCATATCCATGACGAATTTAAAAG
TAATTTTTCGCTAGTTTTCTCAATTTTTTCGATCACCAAATTTTAATGAA
CTGCGTTTTGATTAGTCAAGGGTGAAAAATTATTGCTTCAATTTTAACCA
GAACACTCAGAAGTTTCAGAGTCTACAAAGAGTATTGATTACTCTTTTCA
ATCTCTGGTATAACATGATTTCTAATCATGTTTTTTAATCAGCTACACCC
AGTTTCGATATCTCATCATCATTCAAGGTGGAGGCTCTTTAGTTCAGCAG
GCGGAAGACATCTCATTATGTAACGTGAGCTGTTTTTAAACCAAACTTGT
TAATTTCTATACTAATTTGTTGATTGATGATTAAAATTGAGGAGATAATC
AGTGTTGGTGAGATTTTACACCGAAATGTTTAGTTGAGACAAAAACAAGG
AAACGGTTTAACTTCATTCGAATATTAAACTGTTTTAATTTGTCCATAGG
CACTTTCCTCGAGGAAATGACACTGGCATAAAAAGTGATGCAACCTTTCT
CCATGCAAAATGTGTGAAAAGATATATTGATATGCAAATTTTCTCCCCCT
TTATCATATCGCGATGATTTTTTCTATCTTCTCCTGGGACTCCTTTCACA
AACAAACATCGACAGCCGAAAGTGTTCATCTGCATCGACGATCCCCTCCA
TGTGATTTTGTTTTTAAAGAAAAGTAGTGAATTACTCTTGGCTAAAGCAT
GGGGAGCTTTACGGTAGTATGTAGATTTGCAGAGAACTGTCACAATCAAG
GGACTTTAATAATCTTTTATTTAAGTCTCTTGTCACAACTGAGATAAAAT
TACAAAGTGAAGAAAGTCTCCTGGGTTTTTTTTTTCACACAAGACGTAAG
ATGTGGTTGAATATAGCAGATTTGCAAATAAATTTATTGCAACGAATGTC
GGTGTTTAGGAATTGCAAGGCAGAGAGGATTTTTATTGATTCTGTTTCGC
TGTTAGTATAGTACACGTTTCCTTTTTTGTTGGCTTTTTGTTTAGTTTTT
GGAGAAGAAGAGCGGGCGCGCCATTTGTTGGTTTTCTGTTTCTCGTGTTT
GGCAGAATGCGCGCTCATTTAAAGTTCTTTTGTTTCAAATTTATGCCGAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAACGTG
TAGTCTCAATGTGAAAGATTGGGGATTGGATTTGAATAACGTCATATTTT
GGTTGTAAAGGTTATTTTTGTTCGATTTTCGCGCCTTTGCGAGTTGACGT
TCTTTTACTATACATCAAAGTCGTAAACCAATTACAAAAGTTTACGTGCG
GAGACAAAGGGTAACTTTTCTCACGACCATCCCTCATATGCTGCACAAGT
CAAATTTTCAAAAGAAAAATAATTTTTACAAAAGTTTGTAACTTTTCTTG
GTATAATTTACAAACTTTATAAATGTTGTTCACAAAAAAACAAATTTCAT
AACATGAAAAATACTGCCTGCAGAAAATTTTCATTATTTGCAAAATTTGC
TCATTTCGGAAAAATTCCTGTTTCGACAAGCAAAGTAAGGCCACCTGAAT
CTTTTGTAAACCCTAAAGGTTTGGACGTCACATGGCTGCCATTTTGTAAT
GACGTCAGTCCTAAAAAAAAGAAAAACAAAAAGCTCACACTGCTTCACAT
TTTCCCATGGCAACTGGCTTTATTTATAAGAATTCGAATAGTTGGCAAAC
GGAGCAAGACCCTCACCGCACCCAAATATATACAAATCTAAAATCCCATT
GACCTTAATAAATGCATTTCCCTTTATTAATCCATGCTACAAGCCAGTCA
AAGATTTTATCTTTTCATGATCTTTTAAATCAGTACTTTTTTGTGGATGT
CGAGGAATCGATATTTATATGTTCTTATAAAAAATACTTTTGTTCCAACT
TGTAGTCTTGGCCCAGGCGTGTTGGAAAGCTGACACTAGTCGCTACGTAA
AGTTTGTTTGAATTGTGGGGGAGGTAGGTAAACAATACTTCAGTGGGCGA
AGAATTCATTTTACGAAATTTTGGAAGAAATAAATTGTTAAACAAATATG
TTACCTTCAAAATTTAGTTTAAACTAACTTGTTTTTGCATTTTTTCTTGA
GCTGGCGTAACGACTAAAATTTGCGAAATGTGACGCATGACGTATATAAA
AGGTTGGTTAAATGTACAAATTCTTTTGTTATTGTTCAAGTTCTTCAGAA
AGGCCTTCAATATGGCCCAGTCAGGACTGGGGACTAGATTTTGCTTAGGT
AATCTTCGAGGCTTTTACTATTTGTAAAAAGTTTTGTTTTTTACACTTAG
GTCCTCACATTAGTAAAATGTGAAAAGTATTTAGTAAAGCAATGCTGAAA
TTTGGTCACGATAAGTGTAAGTGTCGAGTCACGCAAAGATGTTTTCTCTT
GCACATGTCTGAGATTTCTATTTGCTGGATTGGACTGTATGAAAATTAAT
TTTGAATTTTTGTGCATGCAAAATAGTAATTTTTGAGAGCCTTGGTCATA
CCAATGTAGACGTAGTTGTATTTCGACTGAATTCTAGGCCTGGGTTCGAA
AGTTTGTATGGGTCCTTCTTGGTTTAGTAGGCAAGGGTATCATGATTTGT
TTGCAACGAGGCAGGAGTGTCTTGAGTTGTCTTAAAAGAGACAGGGGTGT
CATGGATTGTTCTTTAGAGAGACAGGAGTGTCATAAATTGTTTTGCAGTC
AGTCAGGGGTGTCATAATTTGTTTGTAACGAGACAGGGGTGTCATGGGTT
GTTTACAGTATGGAGGTAAGAGTGTCACGATTTGTTTTACTGTGAGACAG
GGGTATCATGAATTGTTCTTTAGAGAGACAGGGATGTCATAATTTGTTTC
GCAGTCAGGCAGGGGTGTCCAGAATTATCTAATGTGAGGTACAGATGTCA
TTAATTGCTTACAGTGAGTCAAAATGATTTGTTTTACTGCGACACAGGGG
TGTCTTGAATTTTTTTAAGTGAGGAGTGTCGTAATTTGTTTTGCAGTCAG
GCAGGGATGTAATGAATTATTTACAGTAAGGCATGGGAGTCATGGATTGT
TTTATCAGGAAGTGTTGGTGTGTGATTACACATCGTTGCATAGCTGGCCA
AGCTCAATTTGTGTCTTCAGAAGGCGGAAGGCGTTTTCTTGTAAGAAAAA
CTTTTTGTAAGAACAGTAGTTTCTCAGATTTTGAATGCGGAATAATTTGA
GAGATTTTGTGTAAATTTTACATATTTCATTTTTCATTTAGTGTACCTAC
TTCTGAGTATATTTTGAAGTATCGTGTTCTCTAAGGGTTTTTTGAGAATC
CATTTCTTCGAAAACCATCTTATATTATTTGAATGTGCTTATCTACAAGA
TACATAGACACTATCAGAAGTGTGTAGGCTGTAGTGATATTAAAAATGAT
CGGTCGAGTTGATTACACAATCACATATTATAACTGTCACATTTAAATTT
GATTATAAATGGTTTGAGTATATTGTATCATCCTTAATGAAGATGTTTAT
ACTGATTTCAATCTATGTGTTGATGAAAGTTCAATTTTCAATCATCAGTT
GGCAGTTGACATGTCCAGGTGGCTGGCTCATGTAACTTTGTTTATTATTG
ACGATTTTGTGTCTTGTTTTCATATTTTAATTCTTGATGGTATTGTGATG
TGATCGCTATCGATGTCTTTCAGTCTTTTTTATACTGAAGCATATAGCTG
AAAGCCGAGGTGCGAATGAGAGACCAGCAAAAGATACAGAGGGTTTTCAC
TGTAAGGAATCGCTATAGAAAAAAAGCGCCAAATCTCGGTGACGCAATGT
TGTTTGGAGCGGCTGCCTTTGTTCCGTTTATCCGCCTTTCTGTATGGCGT
AACTTCTCTCATGTTTCGGTTAAGGGTGCTTTCTTTTATATTTTCCCTAT
CGGCTGCGCTTTTTGTAATGTTTTTGGGCTTTAGGGCTTTATCAGTTTTT
TAAAGTTTAAATGGATGGTAAAGGAAGATAAGCCTTTGATGTATCCAATA
GTTTGTTTAAATCTTTTAAATTTTTCAACAATGTTTCTTTTATTCTTTTA
CCCTTTGGCGAAGTTGCCGCAACAAAGATCTTCGCATTTTTTGAATATCT
TTCTTTTCAAATTTTACAAAATTCTTCATTTTAAAGCTTTTTTCTATCAT
TTGTGTAAAATTTGATCAAATTTTTCATGTTATACAAACTTCATCTATGT
ACTGTTTGACCAGTTGCAAATCAACTTTAGATCTGATCGCAGCAATGTCA
GATATTTTTTCATGAATATTTTTACAGTAATCCTTATAAATCTGGGTTTA
ATAGGATTTTCGTACGCGCGCCTTTGCACGCGTTGCTACGAGATCTAAAG
TTGAAAAGTTCGAGCTAAAGTGAAGAATTTTTCCGTTATTTCATTTTTTG
TCGTGTTATTTGCATATTTGCTAACGTTATGAAAGCCTCATGAGAAAACA
ATGAAGAAGAATAAGAAATTTCGTTTGTGGAAAAATTTTGTTTTCTTTAT
ACATTATGAAGATTTCTTTTCAACATTTTTTGATGGGAATATTTATTAAC
TCTATGTCTGGTTGTTATGTTCGCAGTTTCCAAACTTTTTTTTGCAACTG
ATTCTCTGTATGGGGGTGAAATTTTGAAAATTCTAAACCCGTAATCATAG
AGAAAGATCATTGCACTTCATCTGAGCTCATGCTCTGTATAACTCTCTTC
TGATTGGTTCTCACACGACCTCTATTTTCATTTTCCAACCACTCGTAATA
GCTCATTTTCAAAACAACTAATCTGATTGGATAATTTTTTTTGAACTCGC
CCTCTGATTGGCTGGCTTTTATTAATTTTCTTTTGATTCTATTGTTAAAT
CAGCTGATCAGTTTTTTTTGTTCCCTGTGATTTTTCTTATAAGCTGTTTA
AAATTTCATTTTCGTTGTGCTTTTGTTTTGATCTTTGAAATGAAAAGAAC
CCACCATTTCCATCAGACGCTTGTAGGAAAGGTGCTTCTTCAAATAAGTT
GCTGGACAACTTATGAGAACCAATCAAAAGTAGAGCTGGCTTTACTTTTA
TGATCCTACTTAACCATCCTTCATTTTGTTTTGATTCAAAAGCATCAACA
GAAACAACAACAACAACAACAACAACAAAATGCCTTGCTCATGTCGACAA
CAACAACGAAGAGCCAGAATCACATCTACATCAACCAATGGCAGCTTACG
AAGCCTCAACTCCTCACAATCAAGCCTTCCCGAAGAATTCGATTGCTCTT
TCTCAAGTGATGACGTATTTTATCAAAACAAAACAATGACTTTACAAATG
GGACGTTTATTAGGGTCCGGTGGATTCGGCTCTGTTTTCGAAGGACGTTG
TTCGGGACGTAAGATCGCTGTCAAGAAACTACACCACAGTCAAAAGAACC
CTAAAGCGATCGCCGAATCTTTCCACGCTGAACGAGCAGTGATGTCATTG
AAACATAGAAACATTGTTCGAGTTCTCGCCACCACTATGCATTCAAACAT
CTTCCAATCGTCGTCAGATCGTTTTGTTATTATGGAGTACGCTGGAGATC
GAAATTTATTGAGTTTATTAAACGATGAAAAAATACGAATCACTCGATAC
GATCGATTACGATACGCAACGGACATTGCAAATGCATTGCATTATATTCA
TAAATTGAACATTGTTCATTTGGACATAAAACCAGCCAATATCATCGTAA
CCATTAAGAACACTTGTAAACTTGGTGATTTTGGATGTTGTAAAATGTTA
CCAGAAAGTGGTCAAGGATCTCCCACAACTCCCACAAACTCTAGTTTGAC
AGGAACATTGGCCTACACAAGTCCTGAACTACTTAAAGGTATGTTAGTAA
TTCATACGTCTTTTTCTGTTTTTTTTTATTCTAGCAAGCATGATATGTCT
TTGATCATCATTACTCTGATTCTAACCTTTTTGTAAAATTTGATATTCTT
ATAAAAAACAGATATAAACTATCAGTTTTCGGGCTCAACATTTAGAAGGG
GATTAATCAACAAAAGGTTTTACGAATCTTTATCTAGCCAAATTAATCTA
TACAAAGCTTTCTGTGCAATGTGTAGTTTGATGAGCAATAAAGCCTCTTG
CAGCTAGTTGGGGCGGCTGCAAAATTCTCAGTCTTCAAAAGTTCTTTACT
TTTTCAATCAAAAGATTTAGTAGCTCAGCTGGTTTTCACAATGAAATTTC
AAACTTTTCACAAAAGTTTTTTAACTCAAACAAGAAAAAGAATTTGAATT
GATTTTATTTTTCTAAAAAATATTTTACTAGTTGGTAATAAAATTTTCGG
GGACTCCTCAAATATCAAAATAACGAAATAATATCAAAACAATTCGCTGT
TTGCCTTTTTTCAAAAATATCTTTTAAAGCTACCATGTTAATATGTATTC
AAATAGGGTTTGAAGATTTTCTAAACTGTATGGCACATAGAGCTTTGTTT
TGTCTTTTCGAAATCACATAGAGCTGTTCATGGATTGAGAAATCTTCTTT
TTTGCGGTATCTAACGAAAGAGAAAATTTGCGAAAAGAAAACAATCATAG
AAACTTGTTGATTGTCTCTTTAACGAACGAAATTACATAGCTTCATTTTG
CATCATCATTAATTGTGCGAAAAAAACAACTCATTGAAAATCAAGCTAAT
TACACTTGTTATGATATAATCATGTTTGTTGTTATATGAAAATTTAACCA
CAATTGAAACCTATTACAACATATTACACCAAATATTATCACATACTATC
ACTTCTCCCTTTTCCACGTTATATCACAAAAATCCTACTCAATTCAATAT
TTGGATACATTTATATATTTTTTTGACAACTCCACCCAATTTTTATACCT
TCCCATGAGAAATGTTGCTATTTTTAACTCAGCAGAATTCAACAATTTAC
AAAATGAATCCAATTTTCACAACGCGTTTTACATATTTTTGTATGATACA
TAATAAGTCAGCCTAAAAAGTACCCTACAGGCTATCTTCCAATATGTTAT
CACAATGAATAGCTGAAATAGAAAACTATTGTATAGGGGAGTGTATTTCC
TTTCAGCAGTGGCTGAATAGATAACTTATCTTCAGTTACCACAACAATGA
CCAATTTAATTCAATTTTCAATTGTTTTTTCCTTCAGGTGAATTTCCAAC
CAGCAAAGCTGACATGTACTCTTACGCCATTTGTTTATGGCAACTACTAT
CACGTGAAAAACCTTACGGTAACGAAAACATGTATGTCGTCATCTTTGGC
GTTGTGTCTTACAAATTACGCCCAAAAATCACGCCCAAACAACAAAGAGA
CAATAAAGCTTACATTAATTTGATTCGCTCTCTTTGGGCAGCTGATCCAG
AGCAACGCCCTTCCGCAAAGCAAGTCATGATGAAATTACGTAATCTGCGA
AAACAACCAATTAAAACTGTCAGTATCAGAAACAAAGAAAGATGGCGCAT
TTGAATATGTTTGAAAGTCGTTTTTCATTTACAGTCGAACTAGATTGCCA
GAGACTATATCAAAATTCAAGGAAAAAGTGATAATTTTGTGGATATTCTT
GTAAAATATTTATTAAATAGTTTATATATGATAATTGAATGTAATAATAT
AATGTTTAAAAAACAAAATACCTTATTTGCTAATATATACCAATTTTAAT
GCCGTCTCTTTTTAAAATTTCTTTTGTGGTGAAAATTTTCTTTTTTGACA
AGGTTTCATACTGTATTGAATACTTGGAAATGTTTCTAAATTAAATCTGA
AATTTTTTAGACAGCTCTTAATTTTCTTTTTGATTTTCTGAACATACAGA
GATCAAATTTTTAAATGATTTATCTTATAGTAATTATATTATAACCTAAT
TTCTTCTTCAACTTTTTGTATCATAGCAGAATTTTTATATCGAACAAAAC
ATTTCTTATCCTCCTTTATCATTATACTTATATTAACAGAATTGTAAAAT
ACAAAAACATTTTTATGACATTCTACTTGACTGTGAATTTC

Coding sequence (CDS) from alignment at sc0000635:19016..31206-

>TCONS_00027580 ID=TCONS_00027580|Name=TCONS_00027580|organism=Clytia hemisphaerica|type=CDS|length=3294bp|location=Sequence derived from alignment at sc0000635:19016..31206- (Clytia hemisphaerica)
GTGAATTTCCAACCAGCAAAGCTGACATGTACTCTTACGCCATTTGTTTA
TGGCAACTACTATCACGTGAAAAACCTTACGGTAACGAAAACATGTATGT
CGTCATCTTTGGCGTTGTGTCTTACAAATTACGCCCAAAAATCACGCCCA
AACAACAAAGAGACAATAAAGCTTACATTAATTTGATTCGCTCTCTTTGG
GCAGCTGATCCAGAGCAACGCCCTTCCGCAAAGCAAGTCATGATGAAATT
ACGTAATCTGCGAAAACAACCAATTAAAACTGTCAGTATCAGAAACAAAG
AAAGATGGCGCATTTGACATCAACAGAAACAACAACAACAACAACAACAA
CAAAATGCCTTGCTCATGTCGACAACAACAACGAAGAGCCAGAATCACAT
CTACATCAACCAATGGCAGCTTACGAAGCCTCAACTCCTCACAATCAAGC
CTTCCCGAAGAATTCGATTGCTCTTTCTCAAGTGATGACGTATTTTATCA
AAACAAAACAATGACTTTACAAATGGGACGTTTATTAGGGTCCGGTGGAT
TCGGCTCTGTTTTCGAAGGACGTTGTTCGGGACGTAAGATCGCTGTCAAG
AAACTACACCACAGTCAAAAGAACCCTAAAGCGATCGCCGAATCTTTCCA
CGCTGAACGAGCAGTGATGTCATTGAAACATAGAAACATTGTTCGAGTTC
TCGCCACCACTATGCATTCAAACATCTTCCAATCGTCGTCAGATCGTTTT
GTTATTATGGAGTACGCTGGAGATCGAAATTTATTGAGTTTATTAAACGA
TGAAAAAATACGAATCACTCGATACGATCGATTACGATACGCAACGGACA
TTGCAAATGCATTGCATTATATTCATAAATTGAACATTGTTCATTTGGAC
ATAAAACCAGCCAATATCATCGTAACCATTAAGAACACTTGTAAACTTGG
TGATTTTGGATGTTGTAAAATGTTACCAGAAAGTGGTCAAGGATCTCCCA
CAACTCCCACAAACTCTAGTTTGACAGGAACATTGGCCTACACAAGTCCT
GAACTACTTAAAGCACCAAGAACGTTCAGGACTGAAAAAAAGAAGAAAGT
GAATTTCCAACCAGCAAAGCTGACATGTACTCTTACGCCATTTGTTTATG
GCAACTACTATCACGTGAAAAACCTTACGGTAACGAAAACATGTATGTCG
TCATCTTTGGCGTTGTGTCTTACAAATTACGCCCAAAAATCACGCCCAAA
CAACAAAGAGACAATAAAGCTTACATTAATTTGATTCGCTCTCTTTGGGC
AGCTGATCCAGAGCAACGCCCTTCCGCAAAGCAAGTCATGATGAAATTAC
GTAATCTGCGAAAACAACCAATTAAAACTGTCAGTATCAGAAACAAAGAA
AGATGGCGCATTTGACATCAACAGAAACAACAACAACAACAACAACAACA
AAATGCCTTGCTCATGTCGACAACAACAACGAAGAGCCAGAATCACATCT
ACATCAACCAATGGCAGCTTACGAAGCCTCAACTCCTCACAATCAAGCCT
TCCCGAAGAATTCGATTGCTCTTTCTCAAGTGATGACGTATTTTATCAAA
ACAAAACAATGACTTTACAAATGGGACGTTTATTAGGGTCCGGTGGATTC
GGCTCTGTTTTCGAAGGACGTTGTTCGGGACGTAAGATCGCTGTCAAGAA
ACTACACCACAGTCAAAAGAACCCTAAAGCGATCGCCGAATCTTTCCACG
CTGAACGAGCAGTGATGTCATTGAAACATAGAAACATTGTTCGAGTTCTC
GCCACCACTATGCATTCAAACATCTTCCAATCGTCGTCAGATCGTTTTGT
TATTATGGAGTACGCTGGAGATCGAAATTTATTGAGTTTATTAAACGATG
AAAAAATACGAATCACTCGATACGATCGATTACGATACGCAACGGACATT
GCAAATGCATTGCATTATATTCATAAATTGAACATTGTTCATTTGGACAT
AAAACCAGCCAATATCATCGTAACCATTAAGAACACTTGTAAACTTGGTG
ATTTTGGATGTTGTAAAATGTTACCAGAAAGTGGTCAAGGATCTCCCACA
ACTCCCACAAACTCTAGTTTGACAGGAACATTGGCCTACACAAGTCCTGA
ACTACTTAAAGCACCAAGAACGTTCAGGACTGAAAAAAAGAAGAAAGTGA
ATTTCCAACCAGCAAAGCTGACATGTACTCTTACGCCATTTGTTTATGGC
AACTACTATCACGTGAAAAACCTTACGGTAACGAAAACATGTATGTCGTC
ATCTTTGGCGTTGTGTCTTACAAATTACGCCCAAAAATCACGCCCAAACA
ACAAAGAGACAATAAAGCTTACATTAATTTGATTCGCTCTCTTTGGGCAG
CTGATCCAGAGCAACGCCCTTCCGCAAAGCAAGTCATGATGAAATTACGT
AATCTGCGAAAACAACCAATTAAAACTGTCAGTATCAGAAACAAAGAAAG
ATGGCGCATTTGACATCAACAGAAACAACAACAACAACAACAACAACAAA
ATGCCTTGCTCATGTCGACAACAACAACGAAGAGCCAGAATCACATCTAC
ATCAACCAATGGCAGCTTACGAAGCCTCAACTCCTCACAATCAAGCCTTC
CCGAAGAATTCGATTGCTCTTTCTCAAGTGATGACGTATTTTATCAAAAC
AAAACAATGACTTTACAAATGGGACGTTTATTAGGGTCCGGTGGATTCGG
CTCTGTTTTCGAAGGACGTTGTTCGGGACGTAAGATCGCTGTCAAGAAAC
TACACCACAGTCAAAAGAACCCTAAAGCGATCGCCGAATCTTTCCACGCT
GAACGAGCAGTGATGTCATTGAAACATAGAAACATTGTTCGAGTTCTCGC
CACCACTATGCATTCAAACATCTTCCAATCGTCGTCAGATCGTTTTGTTA
TTATGGAGTACGCTGGAGATCGAAATTTATTGAGTTTATTAAACGATGAA
AAAATACGAATCACTCGATACGATCGATTACGATACGCAACGGACATTGC
AAATGCATTGCATTATATTCATAAATTGAACATTGTTCATTTGGACATAA
AACCAGCCAATATCATCGTAACCATTAAGAACACTTGTAAACTTGGTGAT
TTTGGATGTTGTAAAATGTTACCAGAAAGTGGTCAAGGATCTCCCACAAC
TCCCACAAACTCTAGTTTGACAGGAACATTGGCCTACACAAGTCCTGAAC
TACTTAAAGCACCAAGAACGTTCAGGACTGAAAAAAAGAAGAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015554	XLOC_015554	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
Mos3 protein	TCONS_00027580-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00027580-exon-sc0000635-1575043694:31172..31206	TCONS_00027580-exon-sc0000635-1575043694:31172..31206	Clytia hemisphaerica	exon
TCONS_00027580-exon-sc0000635-1575043694:21169..21914	TCONS_00027580-exon-sc0000635-1575043694:21169..21914	Clytia hemisphaerica	exon
TCONS_00027580-exon-sc0000635-1575043694:19016..19869	TCONS_00027580-exon-sc0000635-1575043694:19016..19869	Clytia hemisphaerica	exon
TCONS_00027580-exon-sc0000635-1510915933:31172..31206	TCONS_00027580-exon-sc0000635-1510915933:31172..31206	Clytia hemisphaerica	exon
TCONS_00027580-exon-sc0000635-1510915933:21169..21914	TCONS_00027580-exon-sc0000635-1510915933:21169..21914	Clytia hemisphaerica	exon
TCONS_00027580-exon-sc0000635-1510915933:19016..19869	TCONS_00027580-exon-sc0000635-1510915933:19016..19869	Clytia hemisphaerica	exon
TCONS_00027580-exon-sc0000635-1491911889:31172..31206	TCONS_00027580-exon-sc0000635-1491911889:31172..31206	Clytia hemisphaerica	exon
TCONS_00027580-exon-sc0000635-1491911889:21169..21914	TCONS_00027580-exon-sc0000635-1491911889:21169..21914	Clytia hemisphaerica	exon
TCONS_00027580-exon-sc0000635-1491911889:19016..19869	TCONS_00027580-exon-sc0000635-1491911889:19016..19869	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000635	supercontig	sc0000635:19016..31206 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.056339	0.0275595	26.9795	14.2781	0.903384	0.00104639	4.53957	4.18221	5.82762	3.75453	3.34761	2.74426	4.43464	1.01462	0	9.39747e-07	1.65185	1.50107	0	0.000574571	0.00232376	1.23561	0	0	0	0.223242	0.110456	0.19694

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000719	Prot_kinase_dom
IPR017441	Protein_kinase_ATP_BS
IPR008271	Ser/Thr_kinase_AS
IPR011009	Kinase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Blast

[Close]

BLAST of TCONS_00027580 vs. Swiss-Prot (Human)
Match: MOS (Proto-oncogene serine/threonine-protein kinase mos OS=Homo sapiens GN=MOS PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.999e-47
Identity = 100/285 (35.09%), Postives = 165/285 (57.89%), Query Frame = 1

Query:  253 LGSGGFGSVFEGRCSGRKIAVKKLHHSQKNPKAIAESFHAERAVMSLKHRNIVRVLATTMHSNIFQSSSDRFVIMEYAGDRNLLSLL-----------NDEKIR----ITRYDRLRYATDIANALHYIHKLNIVHLDIKPANIIVTIKNTCKLGDFGCCKMLPE-SGQGSPTTPTNSSLTGTLAYTSPELLKGEFPTSKADMYSYAICLWQLLSREKPYGNENMYVVIFGVVSYKLRPKITPKQQRDN---KAYINLIRSLWAADPEQRPSAKQVMMKLRNLRKQ 1050
            LG+GGFGSV++    G  +A+K+++   KN  A   SF AE  V  L+H NIVRV+A +  +    S+S   +IME+ G+  L  ++            +   R    ++    L+Y+ D+ N L ++H  +IVHLD+KPANI+++ ++ CK+ DFGC + L +     +P+ P    L GT  + +PELLKGE  T KAD+YS+AI LWQ+ +++ PY  E  + +++ VV+Y LRP ++     D+   +   ++I+  W     QRPSA+ +++ L +L+ +
Sbjct:   66 LGAGGFGSVYKATYRGVPVAIKQVNKCTKNRLASRRSFWAELNVARLRHDNIVRVVAASTRTPA-GSNSLGTIIMEFGGNVTLHQVIYGAAGHPEGDAGEPHCRTGGQLSLGKCLKYSLDVVNGLLFLHSQSIVHLDLKPANILISEQDVCKISDFGCSEKLEDLLCFQTPSYP----LGGTYTHRAPELLKGEGVTPKADIYSFAITLWQMTTKQAPYSGERQH-ILYAVVAYDLRPSLSAAVFEDSLPGQRLGDVIQRCWRPSAAQRPSARLLLVDLTSLKAE 344

The following BLAST results are available for this feature:

BLAST of TCONS_00027580 vs. Swiss-Prot (Human)

BLAST of TCONS_00027580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MOS	3.999e-47	35.09	Proto-oncogene serine/threonine-protein kinase mos...	[more]

You are here

TCONS_00027580 (transcript) - C. hemisphaerica