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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027581 ID=TCONS_00027581|Name=TCONS_00027581|organism=Clytia hemisphaerica|type=transcript|length=1503bp
gttcttattaaaaaagagtGAATCACAAATGATTTTGTATTGTGCTATCA
TGAATTAAATATGGGTTTCAACAAAAAGCTAATAGTAGGTTACAAAATTA
CACAAATAGACGTTTAATAGGTTTAAAAATAagtaagaaaaattgaaatt
aattagCTCAATTAGAAAAGCTATTACTGATTGTTCCAATAAAATGTTTG
TCGACAAAATGTGAATGCCCTCTCTTTTTCTTGAGGGGGTTTGGTACAGC
CTTGAAAATCACCTAACGTGAGGGGTCTTTCTTATCAAATGAGCCTCTTG
TGTATGTATAATGCAATTCCCCTTTGATATCGATCAAGTCATTGGTAACC
GTGGGTTGTTTGAGAGCTCCAAATTTAAATGGATGTAGTGAAGTACTCAT
ACCCAAAATTTCTTCACCCTGTTGCGATGGGGAAGGTCCTTGACCTTGAT
TGGGTTTGATTCCGTTACCACTGGCCTTTATCTTAAAAGGCTTTGAAACG
ACCCTACCTTTCTTATTCGTGACTATTGTTGATGTGGTATGATGGTACTT
CTCTTGCCAAATCCAAAACATACGATCAACATTTGACATAtgcaagaaaa
ataaaggatcAAAAGCCGCCATTTCTTTTGATCCTAAATCACCATGGGAG
CCAGCTATCAACTCGCGTTGAACAGAGTTGTCTTCACTATTTCCACCTAA
TGTGTGAAGCATACTAATACTGGCGTGCTCGAGAGAGATGTTCCCGCATC
CTGCTGACGAGATATTTGAAAACTTGTTGTAGTCTTCAATATCCAAGCAT
TCTTTGTATATATCTTTGATGGGTACAAGTGGAGCCTTCAAATCATTTAA
AGAGTGGATGATATTTTGATTCAGGTACTCTTTTGGATCACGAAGAATGA
GGTTAAGATAATGGTTCTGGAACTCAGCATTTGCGGTGTATTTGGTTGGG
TCTCGAGGATTCATCAGGCCAGAGAAGGGATATCGGCAGGTTGTGTATTG
AGCTGCTTTTGTGTATTTTTGTGTTGCTTTATTTAGAGGTATTGCTTCTG
GTAGAGTAAATCCTAAGAGAGGGTTGGGAATGGTGTTtccatttttatca
atttcaacaaactCATCTGTTAAGAGGCGTGGGAGACCATTAGCCAAAGA
TTCTGGTGAAGTTTCATCCCAATAATGCAACGCTACTTTAAGATTGTCGA
CTGGAGCATGTCGTACCAAAGCATCTTCCAATCGCAAGAGATAAGCGCGG
TACCAAGGGAGAAAAAGAACGTTTTCATGCTGGCTGTGTCCTCTCCACAT
TTTTCCATGTTTGCATTGGGGGGGTTTCGATCTCTTGTAGGTGAACGGCT
GGCCATTGATTGATGCAATGCTCCAAAAGGAGTCAGCCCCGTAGGTAGGA
TGATCATGAGAAAGCTTCTTGATTTCGTCAAACGCCCTCAAAAATGCATA
TCGGTGTTTAGCATGTTCGCTAGTTTCCAATTCCCGAATTGACAtccgat
ttc Run BLAST on NCBI transcript from alignment at sc0000635:66571..68134- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027581 ID=TCONS_00027581|Name=TCONS_00027581|organism=Clytia hemisphaerica|type=transcript|length=1564bp|location=Sequence derived from alignment at sc0000635:66571..68134- (Clytia hemisphaerica)
GTTCTTATTAAAAAAGAGTGAATCACAAATGATTTTGTATTGTGCTATCA
TGAATTAAATATGGGTTTCAACAAAAAGCTAATAGTAGGTTACAAAATTA
CACAAATAGACGTTTAATAGGTTTAAAAATAAGTAAGAAAAATTGAAATT
AATTAGCTCAATTAGAAAAGCTATTACTGATTGTTCCAATAAAATGTTTG
TCGACAAAATGTGAATGCCCTCTCTTTTTCTTGAGGGGGTTTGGTACAGC
CTTGAAAATCACCTAACGTGAGGGGTCTTTCTTATCAAATGAGCCTCTTG
TGTATGTATAATGCAATTCCCCTTTGATATCGATCAAGTCATTGGTAACC
GTGGGTTGTTTGAGAGCTCCAAATTTAAATGGATGTAGTGAAGTACTCAT
ACCCAAAATTTCTTCACCCTGTTGCGATGGGGAAGGTCCTTGACCTTGAT
TGGGTTTGATTCCGTTACCACTGGCCTTTATCTTAAAAGGCTTTGAAACG
ACCCTACCTTTCTTATTCGTGACTATTGTTGATGTGGTATGATGGTACTT
CTCTTGCCAAATCCAAAACATACGATCAACATTTGACATATGCAAGAAAA
ATAAAGGATCAAAAGCCGCCATTTCTTTTGATCCTAAATCACCATGGGAG
CCAGCTATCAACTCGCGTTGAACAGAGTTGTCTTCACTATTTCCACCTAA
TGTGTGAAGCATACTAATACTGGCGTGCTCGAGAGAGATGTTCCCGCATC
CTGCTGACGAGATATTTGAAAACTTGTTGTAGTCTTCAATATCCAAGCAT
TCTTTGTATATATCTTTGATGGGTACAAGTGGAGCCTTCAAATCATTTAA
AGAGTGGATGATATTTTGATTCAGGTACTCTTTTGGATCACGAAGAATGA
GGTTAAGATAATGGTTCTGGAACTCAGCATTTGCGGTGTATTTGGTTGGG
TCTCGAGGATTCATCAGGCCAGAGAAGGGATATCGGCAGGTTGTGTATTG
AGCTGCTTTTGTGTATTTTTGTGTTGCTTTATTTAGAGGTATTGCTTCTG
GTAGAGTAAATCCTAAGAGAGGGTTGGGAATGGTGTTTCCATTTTTATCA
ATTTCAACAAACTCATCTGTTAAGAGGCGTGGGAGACCATTAGCCAAAGA
TTCTGGTGAAGTTTCATCCCAATAATGCAACGCTACTTTAAGATTGTCGA
CTGGAGCATGTCGTACCAAAGCATCTTCCAATCGCAAGAGATAAGCGCGG
TACCAAGGGAGAAAAAGAACGTTTTCATGCTGGCTGTGTCCTCTCCACAT
TTTTCCATGTTTGCATTGGGGGGGTTTCGATCTCTTGTAGGTGAACGGCT
GGCCATTGATTGATGCAATGCTCCAAAANAGGGGGTTTCGATCTCTTGGA
GGTGAACGGCTGGCCATTGATTGATGCAATGCTCCAAAAGGAGTCAGCCC
CGTAGGTAGGATGATCATGAGAAAGCTTCTTGATTTCGTCAAACGCCCTC
AAAAATGCATATCGGTGTTTAGCATGTTCGCTAGTTTCCAATTCCCGAAT
TGACATCCGATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027581-exon-sc0000635-1575043694:66795..68134 | TCONS_00027581-exon-sc0000635-1575043694:66795..68134 | Clytia hemisphaerica | exon |
| TCONS_00027581-exon-sc0000635-1575043694:66571..66733 | TCONS_00027581-exon-sc0000635-1575043694:66571..66733 | Clytia hemisphaerica | exon |
| TCONS_00027581-exon-sc0000635-1510915933:66795..68134 | TCONS_00027581-exon-sc0000635-1510915933:66795..68134 | Clytia hemisphaerica | exon |
| TCONS_00027581-exon-sc0000635-1510915933:66571..66733 | TCONS_00027581-exon-sc0000635-1510915933:66571..66733 | Clytia hemisphaerica | exon |
| TCONS_00027581-exon-sc0000635-1491911889:66795..68134 | TCONS_00027581-exon-sc0000635-1491911889:66795..68134 | Clytia hemisphaerica | exon |
| TCONS_00027581-exon-sc0000635-1491911889:66571..66733 | TCONS_00027581-exon-sc0000635-1491911889:66571..66733 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000635 | supercontig | sc0000635:66571..68134 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002227 | Tyrosinase_Cu-bd |
| IPR008922 | Unchr_di-copper_centre |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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