TCONS_00027588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027588
Unique NameTCONS_00027588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027588 ID=TCONS_00027588|Name=TCONS_00027588|organism=Clytia hemisphaerica|type=transcript|length=708bp
ggtaatttcaatttttgagatatgccataacttacccgaggtAATGAAGT
TACTTTTTGAGCACAGAACAATTAACACTGaataattattttgtaaaatt
aaGTACAATTAGCGCATTtagaagaagtcgttgcagtgctaATCTTTGCT
AATTTTTAAACCACTTTTCCTTTGAgattttttgatgttttgggGTTTTT
TTTACCCTTGAGGTTAGGCCAATCTTtgacagcaaaaattttgaaattcg
cgaattgactgATGATATTTATTAGGGATAAAGGAGCCCTTATGACATCA
CTGGATtcccaaaaactttaaaattcaaTATCTCAAGTTTGAAAAGGAGT
AAGAGGACAAATCCTCATTGAATCAGAAATTTCATGGAGAATACAATTCA
AGAGGGAGTTTTGAGGCTATTTGTTGACTTTGAAATGGCAAATCTTTTCA
CAATTTTGGGCCTGATGATGtcactaaaatagaaaaaatgcaATGGACTT
GAAATGAATAATGAAAGATTCACTGttatgttcatttttttctctgaCTT
GATTGTTAAGGGGACCATCAATAATATGTTCTGTTTGCATTGATATACGC
CAAGAACTTTTGTCACTCTCTTTGCATTGCAAACAGAGACAAGGAACGTG
AGAGTTCTGGAGCGCacgcaaccccttttatattgatttactcaaatttt
aatCTTTA
Run BLAST on NCBI

transcript from alignment at sc0000635:47966..48673

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027588 ID=TCONS_00027588|Name=TCONS_00027588|organism=Clytia hemisphaerica|type=transcript|length=708bp|location=Sequence derived from alignment at sc0000635:47966..48673 (Clytia hemisphaerica)
TAAAGattaaaatttgagtaaatcaatataaaaggggttgcgtGCGCTCC
AGAACTCTCACGTTCCTTGTCTCTGTTTGCAATGCAAAGAGAGTGACAAA
AGTTCTTGGCGTATATCAATGCAAACAGAACATATTATTGATGGTCCCCT
TAACAATCAAGtcagagaaaaaaatgaacataaCAGTGAATCTTTCATTA
TTCATTTCAAGTCCATtgcattttttctattttagtgaCATCATCAGGCC
CAAAATTGTGAAAAGATTTGCCATTTCAAAGTCAACAAATAGCCTCAAAA
CTCCCTCTTGAATTGTATTCTCCATGAAATTTCTGATTCAATGAGGATTT
GTCCTCTTACTCCTTTTCAAACTTGAGATAttgaattttaaagtttttgg
gaATCCAGTGATGTCATAAGGGCTCCTTTATCCCTAATAAATATCATcag
tcaattcgcgaatttcaaaatttttgctgtcaAAGATTGGCCTAACCTCA
AGGGTAAAAAAAACcccaaaacatcaaaaaatcTCAAAGGAAAAGTGGTT
TAAAAATTAGCAAAGATtagcactgcaacgacttcttctaAATGCGCTAA
TTGTACttaattttacaaaataattattCAGTGTTAATTGTTCTGTGCTC
AAAAAGTAACTTCATTacctcgggtaagttatggcatatctcaaaaattg
aaattacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015561XLOC_015561Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027588-exon-sc0000635-1491911889:47966..48673TCONS_00027588-exon-sc0000635-1491911889:47966..48673Clytia hemisphaericaexon
TCONS_00027588-exon-sc0000635-1510915933:47966..48673TCONS_00027588-exon-sc0000635-1510915933:47966..48673Clytia hemisphaericaexon
TCONS_00027588-exon-sc0000635-1575043694:47966..48673TCONS_00027588-exon-sc0000635-1575043694:47966..48673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000635supercontigsc0000635:47966..48673 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.355488	0.138663	0.241501	0.157514	1.24643	0.681885	1.18829	0.941318	0.239651	0.667903	0.50422	0.662909	0.236424	0.196423	0.605574	0.25995	0.426982	0.273527	0.302314	0.553612	0.54993	0.80471	0.244558	0.222338	0.0763344	0.136253	0.389956	0.832343	1.18369	0.884397
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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