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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027615 ID=TCONS_00027615|Name=TCONS_00027615|organism=Clytia hemisphaerica|type=transcript|length=1738bp
ATCAGTATTTCTTATGTCATCTTATATCTGCTTTAATAGCCTTATCGTCT
GAGGTTTGATATCATAGTGACGTCAAcctaaagaaaataaatttttatct
aATACATACGACTTGTATTTACTAATACACAAATCTCGACCCTTAGGATA
TTGGTATCTATGTTTCCACGTTTCTTTAAGtccaaactatataagaacat
accgtcaactgctctaacttgggactatctgacaaaacatgggacgacaa
ttcggccaccatttcaccaaacctccaaagtcatttgatttgagctaagg
aacggcgtatttaaaaatataCgatttctctttcgattttacagtaagtg
aaaatacagaccagatatgcaacagtcccatgtttcgaccaatcgtccca
agttagaacaGTTGACGgcaaggctttgatggccaaaatattacgaacaa
gataagaacatttttaagcttcgCGGActccaaaaaaacaatttcttagg
aaaatggacaaaaatactcacaaaattgtgaaaataagaacatgttaaga
ataatcTTAGGCTaacaaaagttaagaacaccaggaggcttcaaaatttt
tggatgttcttaaaaaacgtgtaaaatcCATTTCACAGCCCATGGACCTA
CTTGGTCATGATATACACTCAACTGATTCGTAAGGTAGGAAGctatttta
ttcttttatttctttttctagaAATCGTATGTCATTGGCACCAACCCAAT
CCTTCTACCTGATCGTCAATAACAAAAGTTTAGCAAGTATGTCAACAACT
TTACAAGAAGTTTATAAGGATGAAAAAGACGAGGATGGATTTTTATACAT
GACTTATGCATCACAAGAAATGTTTGGATGTTGATGAAAAATAATGAGAA
GGAGCTAGTCCACCTCGTCCCCTGTGTATTAtaggcttttttatgcttac
tggcAGCGCCAGATtttattctctggcgtccatcagtagcGTTATGAAGC
CTGGGATacatggggacgaggttgagaCCGGTATAAGAGAACATTTCGTT
AGAGTAATTGATTACTTCATAAGATGATGTGGCAAGCCACCCTCTTTGAA
ACCCTCTTTCACATTTTTACGGGTAGAAtttagtttttcttgaaattgca
AACACTTACAACATATTTATACACTATTATATGCAAGATagaaaaaattg
gatttttttaatagtattttcatttactttaatAATCATTGCATAACACT
TAACTGGCTTTGGATGCCTCTCGCTATCTACAAGATCTATTGCCAGTCAC
TTATTGAAACTTTTGAATTCTAAGTGgtttttcccaattttcttatttga
aattcaaattttctgcgAATGGTTTAGTTCACTGCTCATTTTTCATACAC
ATGGGAAGTCATTTTTACGTTTTATTTGTTGAGAGTTAGAATTTCCGGGA
ATTAGACGTAGATTAAACTTGTTATATATTCTTTAAACTCTTTATATTCT
TTATCTTAGACTAGTGACAATTTCGTTGAATGTTTACATCCATTTTataa
aacaaacatttttattttatatttttttcattatgacactttattttgtt
tagtaaaaagtgaagaagaacaTCTCGGAATCTTTACGTATTTTTCGCAT
ATACACGGTgcaaacatgaaaatatttttaggtctattttttcttatatt
tgTTGTAAATTATAGCAATGATtataaaacaaacaaat Run BLAST on NCBI transcript from alignment at sc0000636:149614..151351- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027615 ID=TCONS_00027615|Name=TCONS_00027615|organism=Clytia hemisphaerica|type=transcript|length=1738bp|location=Sequence derived from alignment at sc0000636:149614..151351- (Clytia hemisphaerica)
ATCAGTATTTCTTATGTCATCTTATATCTGCTTTAATAGCCTTATCGTCT
GAGGTTTGATATCATAGTGACGTCAACCTAAAGAAAATAAATTTTTATCT
AATACATACGACTTGTATTTACTAATACACAAATCTCGACCCTTAGGATA
TTGGTATCTATGTTTCCACGTTTCTTTAAGTCCAAACTATATAAGAACAT
ACCGTCAACTGCTCTAACTTGGGACTATCTGACAAAACATGGGACGACAA
TTCGGCCACCATTTCACCAAACCTCCAAAGTCATTTGATTTGAGCTAAGG
AACGGCGTATTTAAAAATATACGATTTCTCTTTCGATTTTACAGTAAGTG
AAAATACAGACCAGATATGCAACAGTCCCATGTTTCGACCAATCGTCCCA
AGTTAGAACAGTTGACGGCAAGGCTTTGATGGCCAAAATATTACGAACAA
GATAAGAACATTTTTAAGCTTCGCGGACTCCAAAAAAACAATTTCTTAGG
AAAATGGACAAAAATACTCACAAAATTGTGAAAATAAGAACATGTTAAGA
ATAATCTTAGGCTAACAAAAGTTAAGAACACCAGGAGGCTTCAAAATTTT
TGGATGTTCTTAAAAAACGTGTAAAATCCATTTCACAGCCCATGGACCTA
CTTGGTCATGATATACACTCAACTGATTCGTAAGGTAGGAAGCTATTTTA
TTCTTTTATTTCTTTTTCTAGAAATCGTATGTCATTGGCACCAACCCAAT
CCTTCTACCTGATCGTCAATAACAAAAGTTTAGCAAGTATGTCAACAACT
TTACAAGAAGTTTATAAGGATGAAAAAGACGAGGATGGATTTTTATACAT
GACTTATGCATCACAAGAAATGTTTGGATGTTGATGAAAAATAATGAGAA
GGAGCTAGTCCACCTCGTCCCCTGTGTATTATAGGCTTTTTTATGCTTAC
TGGCAGCGCCAGATTTTATTCTCTGGCGTCCATCAGTAGCGTTATGAAGC
CTGGGATACATGGGGACGAGGTTGAGACCGGTATAAGAGAACATTTCGTT
AGAGTAATTGATTACTTCATAAGATGATGTGGCAAGCCACCCTCTTTGAA
ACCCTCTTTCACATTTTTACGGGTAGAATTTAGTTTTTCTTGAAATTGCA
AACACTTACAACATATTTATACACTATTATATGCAAGATAGAAAAAATTG
GATTTTTTTAATAGTATTTTCATTTACTTTAATAATCATTGCATAACACT
TAACTGGCTTTGGATGCCTCTCGCTATCTACAAGATCTATTGCCAGTCAC
TTATTGAAACTTTTGAATTCTAAGTGGTTTTTCCCAATTTTCTTATTTGA
AATTCAAATTTTCTGCGAATGGTTTAGTTCACTGCTCATTTTTCATACAC
ATGGGAAGTCATTTTTACGTTTTATTTGTTGAGAGTTAGAATTTCCGGGA
ATTAGACGTAGATTAAACTTGTTATATATTCTTTAAACTCTTTATATTCT
TTATCTTAGACTAGTGACAATTTCGTTGAATGTTTACATCCATTTTATAA
AACAAACATTTTTATTTTATATTTTTTTCATTATGACACTTTATTTTGTT
TAGTAAAAAGTGAAGAAGAACATCTCGGAATCTTTACGTATTTTTCGCAT
ATACACGGTGCAAACATGAAAATATTTTTAGGTCTATTTTTTCTTATATT
TGTTGTAAATTATAGCAATGATTATAAAACAAACAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027615-exon-sc0000636-1575043694:149614..151351 | TCONS_00027615-exon-sc0000636-1575043694:149614..151351 | Clytia hemisphaerica | exon |
| TCONS_00027615-exon-sc0000636-1510915933:149614..151351 | TCONS_00027615-exon-sc0000636-1510915933:149614..151351 | Clytia hemisphaerica | exon |
| TCONS_00027615-exon-sc0000636-1491911889:149614..151351 | TCONS_00027615-exon-sc0000636-1491911889:149614..151351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000636 | supercontig | sc0000636:149614..151351 - |
Blast
BLAST of TCONS_00027615 vs. Swiss-Prot (Human)
Match: MLP3C (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.112e-21 Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 3
Query: 705 FISFSRNRMSLAPTQSFYLIVNNKSLASMSTTLQEVYKDEKDEDGFLYMTYASQEMFGC 881
F+S R+RM L T++FYL+VNNKSL SMS T+ E+Y+D KDEDGF+YMTYASQE FGC
Sbjct: 69 FLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFGC 127
The following BLAST results are available for this feature:
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