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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027616 ID=TCONS_00027616|Name=TCONS_00027616|organism=Clytia hemisphaerica|type=transcript|length=936bp
CGGAAATGTGGTGAACCAAACCTTAACAAAAGGACAAAAGGTGACCTCTG
AATTACTCCTCACAACTGCTCATAATTCAATCTTGTTGGAAGTTTATCAG
TGAAGTGTTTAATTTTTATACAAGGAAATCCACGAGAGAATCTTACAATG
GTAGATGAAACCAAATCCAGCAAGCCATTTAAACAAAGGAAAACATTTGC
CAGCAGAAGAGATGAAGTGGCTGGAATCAGAGCCAAGTTTCCTTCTAAAA
TACCCGTGATTGTTGAGAGGTACCACAAAGAAAAATCTCTACCTTTGTTA
GACAAAACGAAATTTTTGGTCCCTCAAGAATTAACAATGAGTCAATTTGT
AACTATTATCAGaAATCGTATGTCATTGGCACCAACCCAATCCTTCTACC
TGATCGTCAATAACAAAAGTTTAGCAAGTATGTCAACAACTTTACAAGAA
GTTTATAAGGATGAAAAAGACGAGGATGGATTTTTATACATGACTTATGC
ATCACAAGAAATGTTTGGATGTTGATGAAAAATAATGAGAAGGAGCTAGT
CCACCTCGTCCCCTGTGTATTAtaggcttttttatgcttactggcAGCGC
CAGATtttattctctggcgtccatcagtagcGTTATGAAGCCTGGGATac
atggggacgaggttgagaCCGGTATAAGAGAACATTTCGTTAGAGTAATT
GATTACTTCATAAGATGATGTGGCAAGCCACCCTCTTTGAAACCCTCTTT
CACATTTTTACGGGTAGAAtttagtttttcttgaaattgcaAACACTTAC
AACATATTTATACACTATTATATGCAAGATagaaaaaattggattttttt
aatagtattttcatttactttaatAATCATTGCATAACACTTAACTGGCT
TTGGATGCCTCTCGCTATCTACAAGATCTATTGCCA Run BLAST on NCBI transcript from alignment at sc0000636:150057..157407- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027616 ID=TCONS_00027616|Name=TCONS_00027616|organism=Clytia hemisphaerica|type=transcript|length=7351bp|location=Sequence derived from alignment at sc0000636:150057..157407- (Clytia hemisphaerica)
CGGAAATGTGGTGAACCAAACCTTAACAAAAGGACAAAAGGTGACCTCTG
AATTACTCCTCACAACTGCTCATAATTCAATCTTGTTGGAAGTTTATCAG
TGAAGTGTTTAATTTTTATACAAGGAAATCCACGAGAGAATCTTACAATG
GTAGATGAAACCAAATCCAGCAAGCCATTTAAACAAAGGAAAACATTTGG
TAAGCTTTTCATTTTGTCACTTATATTTTAATTTGAACGGTTGGTGCTTT
TTATTTTTAAAGTCGAAAATTAGCATTGGCTCGTAGGGAATAATAAATCT
ATGGGAAAAGGTATTGTGTTTTTAGACATTTCAGGAGGGAACAGTTATGA
ATAAAGGCAGTGAAAAATGCCCCCCCCCCTGTTTCCTTTTCAAAGGCAAA
GCTGAGCAAGACAGAATAATGCTGAATTTTCATTTATACTTGTCATCAAC
ATGAACTAGCTACTTTTATAAGAGTTTATACTTGTTATGTCATATACTTT
TTCACAATGCCTGATGGACTTTGAACTCTCTGAAAACTTACAACTTTTGA
AATTATATTTTCATTTAGATTTTAGGCTTTTTTTTGTAGTCGCAATATAA
CATGAATAGTTGTTTGAGAGAAACGCAATGGTCTTTTTTTTTGAATAACT
TATTACTCCACAGCAGTTACCTAGAGAGGCAAGACAATTTATCACGTTTT
TACTTTTTTATTCAATAGACTGTTGCGTTCTCTTAAAGCTAAACAACTAT
AGGACCATTCAAAAAGTATATACACTCTGCGAGGGGGAGCTTTGAAAAGC
CTATAAAGGTGTTTAGATTTTAGACTTTTTTAGGCAGGGTGAAAAGGAGG
GTTATTGTAAGTTGGTCTAATTTCGACATCCCTCTTCTAATTTCGACACC
CGTCTTCTAATTTTGACACCCTTCATTAAAAAAGGGAATGATGGGAAGGT
CGGGGGATCACTTTCCAACTGATCACTAAACAAAGAAAAATGGTTTCTAT
TAGTGATCTCGACCTTCCATTTTTCCTATCTCTAAAGGAGGGTGTCAAAA
TTAGAAGAGGGGTGTGGACATTAAACCAACTTACAGTAATCAACATATGA
TGCTTTGGAAATTTTTTAAAGAGTTTTTCCAGTTTCTTTTCTAGCCTTCT
ATTTGAAGTAAAAACCTTAGTTTACATATATACACTTTTATCAAGTCTCT
TTATCATTATTTATCAAGACTGATCAAGAAGTCAATTCTTAAAATTTTGA
AAGCACATAATCAAAAAGCACACATATATAGGCAGAGAAGGGTACCATCA
AAGTGTACAAGAACATACAAGGAGAGGGGGTGTTGCANAGCACATAATCA
AAAAGCACACATATGCAGAGAAGGGTACCATCAAAGTGTACAAGAGCATA
CAAGGAGAGGGGGTGTTGCGTGGACAATTATTTGGGCAGTCTATAATGTG
TAATAAACCTTTTTCATTTCTAGCTACCAACTTTTATTATATACAAAAGT
ACAGGCAGTCTAAACTTAAACTCCTATATCAGGATTCGAAAGAAACTAGG
CTAGTCTTACCTCTTTTATCTTTCCTTTTACAACAATACAATGCTTATAG
GTTGACACAACACATGTGTACATGTACATTGACAAGTAATCCCTGAGAAA
AGTTTTTATAGAAATCTGCAACAAAAACGAAAGTGATCTCTTCTACTGAT
TGCTTCCCAGTGCTCCTTCGCAACTGTTTATCAAATTTCCACCAATGAGG
TTGCCGCATTTCAAATGGCCCTTCTTTTTGGCACCTGTGGCCTTTCAGTG
TCTTGCACAACAGGCGGCTGTGAAATCCCACCCTTCATATGTTTGTTTCA
ATACGTGATCCGTGGCTTAGGTTTTTTCTCATCTTCAATTTACTGAAGAA
AGCGGTAATTTGATGTGAGAGTTAGATTGTCAACAAAGTGCCGTAAAAAA
TCATTGAATAGAAGAACAACTTAAATCTTAAAATATTTTCATTTTGAAGA
ATAGGTGCAAAAAAGTGAAACATAGAAAAGTTTCATTTTTCATTGCATTA
ATTAAAATAGGGAATTTGGAAACTTTTCTATGTTTAGTTTTTTGCACAAA
CTCCTGTAACTATGGGCAAGCACCCTGTTGCTAAGATGTTGGCTTGAAAT
CGAAAATGAAACCACTCTAAACGAAAGTAAAATTGGCCCGTACTCAAAAT
CCCGTAATATTGATATACAAGTTTAAGTCTATACTGACAGGAACGAAAAC
GACAATAAAACATCTTATGAAGAAGCCACACTCATTAGAACAATTCAAAT
TCAAGATCAAACTTCACAATTCAAAAAGAAATCTTGAAAAAACTTTTTAA
AAATTTGTTCTTAATAATGACACAGCGTATATTTTGTAGTCCTTTAGGAG
ATAGCACTACCATTTTGATTGACATTTACTCCAACGGTGTTTTCTTTTGT
TTACTTAAAGAAATATTCCATTCTTACAATGGAAATCAAAAGGGAAAAGT
GCTAGCTGATTATGCTTTCACGTTTTATTGACTAATTCCTGGAGCTTATT
ATTCAATATGACATAGGGTTCTACATAACTTCTATTGAAATCAGTAATTA
TAGGATCATATTCTCTTTCTTGTGCGAAAAAATATTTAAACCCGGTATTG
ATCTACCAGGTCTTGCGTAACAGGTTACCGAGAGGTCGGGTAACTTGCAT
CAGTGGAGGCTAACATGCATAGCCATCAAATGAATGGCCTGCCTGGTCAT
TAAAATAGTTAAATCAAAACAAACTTGATTTACAAAATTTACAATCATAA
ATAAAGTATCTTCATGAATTATTGTGTTTAATATCATTATTAAGATTTGA
GATTACATGTCAAGCAGTCATCAAGAAACATCTAAATTCCCGCCATCTTA
AAATTTTTGATCTTGCATGATTTTTTACTATCCAATCACACTGTTTTATT
TACCCGCAATTCTGTCGGTGAGTAACTCGCCAAAAATACTCCCATGGCAA
ATGAGATTCTAAAATGGTAGAGTAGAGCTGTGAGCAGAAACATTTGTTTT
GAAATCTTGCTGCTTTGGTTGGTCAGGCATTTGATGGCTTCCCTCCACTG
ATCTTACAGTAGTAAAAAGAAATGTTTTACCGTTATGAATCAGGGAATCA
AGATCAATGTTTTGATGTGAAATATGATTGGTCTTGTTTGCAATTCCCAG
GAGAATAATTTGTAATCAGCCTAAAAAGGGTCATACTTTACCTTTGCTGG
TGAAAAACTTTGACATTTTAAAGGGTTTGTTAAATAAGAGATCATAATAT
TTCTTTTACATAATAACACTTCGTCACAATGCCTTATATGCATGTAAGTG
GTGAGCTTTTTCCATATTTTTGTACATTTGAAATAAAATGAAGTGAAAAT
TTGTCTCATGATTTTTGCATATAATCCAGGAACGTGGATGAAAAGCAAAA
AGGGCCATAAAATAACAAATCTCTACAGCATACATTACTTGCCCTTAGCT
AGTGTAAACATGATGATATTTGTTACTAGGCAAAAATTCTGGTAAAATGC
AAATCAATCAGATACAATTTTACCCTTAAGAAATTTATGCTGTAATGTAT
ATCGTAATTAGTTATTCAATAGATCACTTTTGATTATTCAATGTATATAA
TCCCCTAAACGACTAATGCGCTAATATTTGAGTGAACTTTATTTTTGAAT
GGTCTTAATATGAAATCAAATTATGAAAATATTTATAATAATGAAGTTGA
CAAATTGTTGGATTTAAGAATCTTTGAGAATGAGTAGATTACCATTAGGT
AGGTAAAGTGAACTTAAATTGATATTAAAATTTAGTCTTAACATTGAACG
TAGTGGTCTAAAAAAATGGCTATTCTTTTTTAGAATCAACCTTACAATCT
AGTTTTTATATTTATAAAAACTAGATTGCTGACGTGTGGAAAGGAATGTC
GGCGTGACTGATCCTTTTGTTTCGATAATAACATCAAAGCGGGAACTAAT
TTTCTTCTCGTTTCTCTCTTTCCTTTTTCTTTCTCATAACTTCAAGCTTT
CCTTCGGACTCTCCAAGCGTGGTTAGCTCAAGCGGTTGGAGTGTCTGTCT
CATAAGCATGGGTTTCCGAGTTCGATCCCGCTGGGTGACAAATTTTCCAA
TTCTTGATTTTGTTTTTGTGCTCATCACTTTAATTTTGAATCTCATTTCA
CGGAAGTGAAGAGAGATCGACGCGTTATGTAATGTTAATTGCTATTAGTA
ATTATGCGTTCAATTCGAATCTATGATCTGTTCCCTCTTAGTGAGGAGTT
TAATACCCTTATAACAACCGTATTTTATAAGCATTGAATACTGAAATTCA
AATGACGACCACGCAAGACCATTTTGACCCGGAAATCAATTATCGTTCTA
TCTTTAAAGTAAAAAACGAGAATGATTCTGAAAGAAGTTATTTGACGATT
CTCTTACAAAGAATCGCTCTCTCACTGGAAGTGAAAGTGAAAGTAGTGAA
ACTGAAACTGTCAGTCACCAAACGCAGGCGCAAACGCCTATACCTGTTCT
TCTATATCTCAGCCTTGAATAATCGCTTGTGGTCAGCAGATGCTTGTCCG
GGGGGTAAAACCTATTGTCCGGGGGGCCAAAAGTCACCCTGTCCGGGGGG
TAAATCACTAAAAATTGTTATATCCTCCACCCCCCATGTACAATTTTTTT
CTGGAAGAGCCCATTGTGTGTTCAGATTTCCCAAAATTTTATCCCAAAAA
TTGTAATTTTCTTTATGTGCAAAAATAAATCCCGAAAAATTGAATTATTA
CATTATTTCTTTGTTGTACTGGTAATTTATATAATGAAAGATATATACTT
TATCTTTATTTTCCCTTCCTTTTTTTTACAGCCAGCAGAAGAGATGAAGT
GGCTGGAATCAGAGCCAAGTTTCCTTCTAAAATACCCGTAAGAATCAAAT
ATTGCATTTTTAGCTTTGTTTATACTAGACTCGCTGTAATTTAGTTGAAA
ATTCTAAATAACTTATCCTCTTTTTAAATTTAGATTACAGTACGCTTCCT
TAACAACAAATTTTTGGTGATTTCCGGCTAATAAGCTTGTCAGATTTTTT
TGAAAATCATGTAATAAAAGCGAAGTAAAGATGAATGTCGACCAAATAAA
AACTGAAATTTCTATTTCAGGTGATTGTTGAGAGGTACCACAAAGAAAAA
TCTCTACCTTTGTTAGACAAAACGAAATTTTTGGTCCCTCAAGAATTAAC
AATGAGTCAATTTGTAACTATTATCAGGTATGTATGTTGCTTTATTTTTT
GCTATCGTATTTCAGACCAGAAGCCTTGTAATTGTGATTTTCAGAAGCAC
CGTGTTCTTCTTCTTCAATTTTGTCCTGAATTTTCCACTTTTTATTTCAA
GCTGCTCCCTAAAAAGCCACTAAAGGGGATCCGCCAAGTGGCAGGAATTT
TTAGGCACTATTCCCTACAACCAGAAGTCGAGTTTGTTGGTTTATGAAGA
AAAAGATTTATTAAAATTCTGATTAAAACATACACTTCTGTCAAGTGGAG
CGATGTCCAAGTTATAATTCCTAATTCTTATATTTTTAGTGTTTTACCAT
TTATTGTTTCACTCAAAAGCTTAAATGGGACTTCTTTACAATGATCTAAG
TCAGTGTTTGGTGTTAAATTCTAGTTAACCTCAAACCTGAGACCCCTTCA
AACACAACTGCTTTAAATTTATATTTCATGTTCTCGTAAGATTGTGCCTA
TAAAAGTGGGTATTACAACAAGAATTTCCAATCACTACATTTTACATCTG
AAGTAACTGCTTTTGACAAAGAAAAGAACTCGCGAATGACGCTATAACAA
AATGAACACAGCTTAACGATTTGTGGTCGAAAAGGAAAGTTGTGTGAACA
GCCCTGATATACTAATGTCAAGCTTTCGTTATCTTCAGGGTATGCCTTTT
GTCAATGTGTCATGCTGTAGACTTTATATCAATCACATGATAAGTTTTAA
CACTCTAAAGGGTTTTAACTTTGACACTGATAATGTAACAATTTGTATTA
TTAGTTATCAGTATTTCTTATGTCATCTTATATCTGCTTTAATAGCCTTA
TCGTCTGAGGTTTGATATCATAGTGACGTCAACCTAAAGAAAATAAATTT
TTATCTAATACATACGACTTGTATTTACTAATACACAAATCTCGACCCTT
AGGATATTGGTATCTATGTTTCCACGTTTCTTTAAGTCCAAACTATATAA
GAACATACCGTCAACTGCTCTAACTTGGGACTATCTGACAAAACATGGGA
CGACAATTCGGCCACCATTTCACCAAACCTCCAAAGTCATTTGATTTGAG
CTAAGGAACGGCGTATTTAAAAATATACGATTTCTCTTTCGATTTTACAG
TAAGTGAAAATACAGACCAGATATGCAACAGTCCCATGTTTCGACCAATC
GTCCCAAGTTAGAACAGTTGACGGCAAGGCTTTGATGGCCAAAATATTAC
GAACAAGATAAGAACATTTTTAAGCTTCGCGGACTCCAAAAAAACAATTT
CTTAGGAAAATGGACAAAAATACTCACAAAATTGTGAAAATAAGAACATG
TTAAGAATAATCTTAGGCTAACAAAAGTTAAGAACACCAGGAGGCTTCAA
AATTTTTGGATGTTCTTAAAAAACGTGTAAAATCCATTTCACAGCCCATG
GACCTACTTGGTCATGATATACACTCAACTGATTCGTAAGGTAGGAAGCT
ATTTTATTCTTTTATTTCTTTTTCTAGAAATCGTATGTCATTGGCACCAA
CCCAATCCTTCTACCTGATCGTCAATAACAAAAGTTTAGCAAGTATGTCA
ACAACTTTACAAGAAGTTTATAAGGATGAAAAAGACGAGGATGGATTTTT
ATACATGACTTATGCATCACAAGAAATGTTTGGATGTTGATGAAAAATAA
TGAGAAGGAGCTAGTCCACCTCGTCCCCTGTGTATTATAGGCTTTTTTAT
GCTTACTGGCAGCGCCAGATTTTATTCTCTGGCGTCCATCAGTAGCGTTA
TGAAGCCTGGGATACATGGGGACGAGGTTGAGACCGGTATAAGAGAACAT
TTCGTTAGAGTAATTGATTACTTCATAAGATGATGTGGCAAGCCACCCTC
TTTGAAACCCTCTTTCACATTTTTACGGGTAGAATTTAGTTTTTCTTGAA
ATTGCAAACACTTACAACATATTTATACACTATTATATGCAAGATAGAAA
AAATTGGATTTTTTTAATAGTATTTTCATTTACTTTAATAATCATTGCAT
AACACTTAACTGGCTTTGGATGCCTCTCGCTATCTACAAGATCTATTGCC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00027616-exon-sc0000636-1575043694:157209..157407 | TCONS_00027616-exon-sc0000636-1575043694:157209..157407 | Clytia hemisphaerica | exon |
| TCONS_00027616-exon-sc0000636-1575043694:152471..152526 | TCONS_00027616-exon-sc0000636-1575043694:152471..152526 | Clytia hemisphaerica | exon |
| TCONS_00027616-exon-sc0000636-1575043694:152131..152237 | TCONS_00027616-exon-sc0000636-1575043694:152131..152237 | Clytia hemisphaerica | exon |
| TCONS_00027616-exon-sc0000636-1575043694:150057..150630 | TCONS_00027616-exon-sc0000636-1575043694:150057..150630 | Clytia hemisphaerica | exon |
| TCONS_00027616-exon-sc0000636-1510915933:157209..157407 | TCONS_00027616-exon-sc0000636-1510915933:157209..157407 | Clytia hemisphaerica | exon |
| TCONS_00027616-exon-sc0000636-1510915933:152471..152526 | TCONS_00027616-exon-sc0000636-1510915933:152471..152526 | Clytia hemisphaerica | exon |
| TCONS_00027616-exon-sc0000636-1510915933:152131..152237 | TCONS_00027616-exon-sc0000636-1510915933:152131..152237 | Clytia hemisphaerica | exon |
| TCONS_00027616-exon-sc0000636-1510915933:150057..150630 | TCONS_00027616-exon-sc0000636-1510915933:150057..150630 | Clytia hemisphaerica | exon |
| TCONS_00027616-exon-sc0000636-1491911889:157209..157407 | TCONS_00027616-exon-sc0000636-1491911889:157209..157407 | Clytia hemisphaerica | exon |
| TCONS_00027616-exon-sc0000636-1491911889:152471..152526 | TCONS_00027616-exon-sc0000636-1491911889:152471..152526 | Clytia hemisphaerica | exon |
| TCONS_00027616-exon-sc0000636-1491911889:152131..152237 | TCONS_00027616-exon-sc0000636-1491911889:152131..152237 | Clytia hemisphaerica | exon |
| TCONS_00027616-exon-sc0000636-1491911889:150057..150630 | TCONS_00027616-exon-sc0000636-1491911889:150057..150630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000636 | supercontig | sc0000636:150057..157407 - |
Blast
BLAST of TCONS_00027616 vs. Swiss-Prot (Human)
Match: MLP3C (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 7.858e-58 Identity = 86/119 (72.27%), Postives = 104/119 (87.39%), Query Frame = 1
Query: 166 SSKPFKQRKTFASRRDEVAGIRAKFPSKIPVIVERYHKEKSLPLLDKTKFLVPQELTMSQFVTIIRNRMSLAPTQSFYLIVNNKSLASMSTTLQEVYKDEKDEDGFLYMTYASQEMFGC 522
S +PFKQRK+ A R++EVAGIRAKFP+KIPV+VERY +E LP LDKTKFLVPQELTM+QF++IIR+RM L T++FYL+VNNKSL SMS T+ E+Y+D KDEDGF+YMTYASQE FGC
Sbjct: 9 SVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFGC 127
The following BLAST results are available for this feature:
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