TCONS_00027620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027620
Unique NameTCONS_00027620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027620 ID=TCONS_00027620|Name=TCONS_00027620|organism=Clytia hemisphaerica|type=transcript|length=544bp
gtgatATCGTATCTCGGTAAAAGAGACGCCAAAAGTTTAGCTGCTACTTC
AAAAAGAAtgtatatttttcataaaattaaaGTGCactaaatatcttttc
aacgattttaaaaacattttaatgatgagTTTGAATGTTTTACCGACcga
acttttgaaaatggtgatATCGTATCTCGGTAAAAGAGACGCCAAAAGCT
TGGCTGTTGCTTCAAGAAAAATGCGTGAAATAGCGTTGGAAAAGATATGG
TCAAAACCGATCTACCAGAAATCGAAAGGATTGAGGTTTTTGAAGATGAT
TTCGCGTTTCCCGATTGATCAAATTCGTGTCAAAGATTTTCGATGCAAGA
TGGAGGAAGTCATTGAAACCGTATCATCTTTAAAACGTTTGAACTTAGAT
TTGAGTTCTAAGTGTGTCTTTAGGACTCCTTTGGACTTGATACGTTTCAA
ATTCCCAATAGTCGCTCATACCAAGGCTTTGAAGATTGACTCGGAGAGTA
AATTTGGTCTGCTTCTTGTTGCCCTGGAGACTGGGTTTGTTAAG
Run BLAST on NCBI

transcript from alignment at sc0000636:187925..190622-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027620 ID=TCONS_00027620|Name=TCONS_00027620|organism=Clytia hemisphaerica|type=transcript|length=2698bp|location=Sequence derived from alignment at sc0000636:187925..190622- (Clytia hemisphaerica)
GTGATATCGTATCTCGGTAAAAGAGACGCCAAAAGTTTAGCTGCTACTTC
AAAAAGAATGTATATTTTTCATAAAATTAAAGTGCACTAAATATCTTTTC
AACGGTACGTAAAATGTTACAATTGAAGCATTTGTTGGAAAACGGCAAGC
AAAACAAAGTGTATGGACTTTACTATTATAAAAATTAATTTTTAAATATT
GCAAATTTTTGCATGATCTTGTATCAAAACTTCTGTCAGTCTTGGACTTA
GCGTCATTTTGACGGTTGTCGTGAGAAAAATTGATATGCGAGGGACCCCT
AGTTCTCCCAGCTGTCCAAACACGTATGTAAATTTGAGTCATTCTAGTGT
GGTCGTGTTACAAAAGTACAGGCTGTTTGTAGGTAAAAAATAATATATAG
CTGAAACTTTCTCCAGACCTTCTCTATAGGATGCTTATGCCTCAGGAAAA
AATCCCCTAAAATCCCACTGGTGGAACATCCCTTTTTNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGC
AATTTTTGGTCAATTTTAGACCAAAATGTGGCGAAAAGTGGAACTTGCGC
ATGAAATATCTCGAGTTAGGTAATGAAATCGGCCATACCCGTTTAAAGGT
CTTCTGTATTGTTTTTTGAGAGCTTTCGAATGGTATACCTGATATTGTCT
GAAAATGAGTTTGAAATTTTCAAAACATTTCGCCCTTAGGGTTTTGCCTG
GGGAAAAAAGAAATTGCCCATCAAAAAGGGAATGTTCCACCAGTGGGATT
CTAGGGGATTTTTTTCCTGAGGCATAAGCATCCTATAGAGAAGGTCTGGA
GAAAATTTCAGCTATATATTATTTTTTTCCTGTAAATTATGCTAAAAAAC
GACCCCACTATTCTGTCGACAAGTAGAAATACCCTGTTTTCTTAGAAAGA
TGAAATGAAAAGTTTTCAAACTGTGCCAAATTATTATTTGGCCTCTTTTG
TATCTTGAAATTAACTTTTCATAGAATATTATTATAAAGCTCTCATATAT
GGGTTATCTATTTTGATCTTGGAATTTCGTCTTCATTTGGTAATTTTTTT
CGTTTCAGATTTTAAAAACATTTTAATGATGAGTTTGAATGTTTTACCGA
CCGAACTTTTGAAAATGGTGATATCGTATCTCGGTAAAAGAGACGCCAAA
AGCTTGGCTGTTGCTTCAAGAAAAATGCGTGAAATAGCGTTGGAAAAGAT
ATGGTCAAAACCGATCTACCAGAAATCGAAAGGATTGAGGTTTTTGAAGA
TGATTTCGCGTTTCCCGATTGATCAAATTCGTGTCAAAGATTTTCGATGC
AAGATGGAGGAAGTCATTGAAACCGTATCATCTTTAAAACGTTTGAACTT
AGATTTGAGTTCTAAGTGTGTCTTTAGGACTCCTTTGGACTTGATACGTT
TCAAATTCCCAATAGTCGCTCATACCAAGGCTTTGAAGATTGACTCGGAG
AGTAAATTTGGTCTGCTTCTTGTTGCCCTGGAGACTGGGTTTGTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015577XLOC_015577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027620-exon-sc0000636-1575043694:190519..190622TCONS_00027620-exon-sc0000636-1575043694:190519..190622Clytia hemisphaericaexon
TCONS_00027620-exon-sc0000636-1575043694:187925..188364TCONS_00027620-exon-sc0000636-1575043694:187925..188364Clytia hemisphaericaexon
TCONS_00027620-exon-sc0000636-1510915933:190519..190622TCONS_00027620-exon-sc0000636-1510915933:190519..190622Clytia hemisphaericaexon
TCONS_00027620-exon-sc0000636-1510915933:187925..188364TCONS_00027620-exon-sc0000636-1510915933:187925..188364Clytia hemisphaericaexon
TCONS_00027620-exon-sc0000636-1491911889:190519..190622TCONS_00027620-exon-sc0000636-1491911889:190519..190622Clytia hemisphaericaexon
TCONS_00027620-exon-sc0000636-1491911889:187925..188364TCONS_00027620-exon-sc0000636-1491911889:187925..188364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000636supercontigsc0000636:187925..190622 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.453958	1.85122	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.162728	0	0	1.76736	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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