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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027640 ID=TCONS_00027640|Name=TCONS_00027640|organism=Clytia hemisphaerica|type=transcript|length=1458bp
aaaacagaacaATCAAATGGTTGAGAAAATGAAGATGCGATAAGATGAGA
ACTTGATATACTTGGAACCATTTGATGGAGGTAAACCTCCTGTGGTTCCA
CACTTAAATTAATAATGGCATTCTCCTCCTCAATCACAACAAAGGAATTA
GCAAGGCGTCTTGGGTTGTTAAAAAGACGTTCCTCTTCAATCTCAAGTAA
CAAAGAAGGTCAGCCATCCAAGAAGAAAAGTATGTTGACTTTTTTCACTA
TGTTCTCTGTATGGAGCTTTGCCACAACTCGTAACTTCATTTCCCTAATT
CAATTTTAAGCacttttttgccctttttgcctcataaagttttcttttat
aaagGTTTTGAGGCTTAgttaatttcaatttcagtcACGTCTATTAACTT
TCATGCCGTACGCATGAATAGATGCCACACGTCATTCTCAGACACCCATG
TGACTTAGCCGAGCTTTtattactgattttgcacaataATCAAAAGgttt
taccttaaggaagaaattttggtgggaatttaatttggcgggtggccgaa
aaagttttttcagagggtgaaaaattaaatttggcaaaaaggAAGGTTAA
GGCCGTTTTCCATTCGGCTCGAAACTTTTCCGCGCGGAAAACTGACATTA
ATTTCCATTTTCCGCGCGGAAAACTTGTatgcttaaaaaccttgaaaagc
acttCTTCCTATTCAATTCATGAATAGGAAGAAGTATCATAACTCTTTTC
TGAATAAGAAAGTGGCTAGAGTCTAGGTTTTTCTCTATTATGGTAAAGTA
AGGTATTTCCATCCCTCTTCTAGTCTTTCAATAAACTaggttttttcatc
tttctatCGATTGTTATTGGTACCAGGTTTTTTCAGTAACTTCAGATTTC
GATGAAACCCAGACAAGGGGGAGTGTTAAAAGCTTGAACCTCCCGAAAGG
GGGTTGCCAGTTAGAAGGGGGTCTTCCTACCTAAAGGTagctctttttga
aaaaggtttgcTTGCGGCAGTACAAAGTTGTTTTTGCCATGATGGGTCAA
AGTCATTGCATTATGTAAAGGGGTCAGACTAAAACTTCTTTAGAATTTCA
TAAGGGGGTCTGAATTTTCAAATGGATTTTTAAGCAGTGGcgtggcgtgg
tggcagggaGGGGGCAGATGGGCCAGGTCGATGGGCAAAGCCCCACCAGC
GGAGTtcttttgagaaggggcgccGAAAAATAAGGGGTaccaagaaggat
ttttcagacGCCCCTGTAGAAAGATTGgcaattgaaaaacaaaaaatgat
gcTCCCtatcacctcaaaaactcaaaattttgttggcttgcttcgctcgc
acactctTCTTTGTGTTTATGATTTAGGTTTTCTATTATCAAATGAATTT
GTAAGCAAATTAAATGTATGAGAcggggcgccaaaaacaaaaaatctcta
aaaagggC Run BLAST on NCBI transcript from alignment at sc0000638:21389..24576+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027640 ID=TCONS_00027640|Name=TCONS_00027640|organism=Clytia hemisphaerica|type=transcript|length=3188bp|location=Sequence derived from alignment at sc0000638:21389..24576+ (Clytia hemisphaerica)
aaaacagaacaATCAAATGGTTGAGAAAATGAAGATGCGATAAGATGAGA
ACTTGATATACTTGGAACCATTTGATGGAGGTAAACCTCCTGTGGTTCCA
CACTTAAATTAATAATGGCATTCTCCTCCTCAATCACAACAAAGGAATTA
GCAAGGTAAGTAAAAATAGGTAGTGgaggtccaaaaatgaaatttttatg
tttaaccatcttttttaaattagttctcaacttcagttgagctataatct
gacaatgtctgtatgtatgtatgtctgtatgtccgtccgaaccgaaaact
ttggggcagcctggagacttcaaaaaaggtcggatttggctgaaatttgg
cacacttgttccttgggtgaatatctgggggtgtttttttcaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctggcacact
tgttccttgggtgaatatctgggggtgtttttttcattctttgaaaattt
tgatttttggggcctggggacgagtttttcaccaaaacgaggctggcagc
ctggacacttcaaaaaaggtcggatttggcNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtgggggtgtttttttcattttttgaaaattttga
tttttggggcctggggacgagtttttcaccaaaacgaggctggcagcttg
gagactttaaaaacggtctgatttggctgaaatttggcacacttgttcct
tgggtgaatatctaggggtgttttttttattttttgaaaattttgatgtt
tggggcctggggacgagtttttcaccaaaacgaggctggcagcttggaga
ctttaaaaacggtccgatttggctgaaatttggcacacttgttccttgNN
NNNNNNNNNctgggggtgtttttttcattttttgaaaattttgatttttg
gggcctggggacgagtttttcaccaaaacgaggctggcagcttggagact
ttaaaaacggtccgatttggctgaaatttggcacacttgttccttgggtg
aatatctgggggtgtttttttcattttttgaaaattttgatttttggggc
ctggggacgaggaCACTATTCTAACgcacataaaaaatgaaaaaattaag
ataaaaatacccccaggtattcacccaaggaacaagtgtaccaaatttca
gccaaaacggacaaagtatatttgctacctaatactaaatatttgaaatg
ttacaattgggccttctaataacgggaaaatctgaagttgagcccagtgc
ggtgcacacgttcgactatttttcATGTGGATTCCGAATTtggaattttg
gaaattttccatTTTGGACAGTTTCTCATGCTGATTATGAATTTAGGCAG
TATGGCAATaatgattttaaaaatcttttttcggaACTAtggaacatttt
tattccaagaACATAAGCTTCTTTGCTATCTataggattttcattttcaa
actttcaaataccCTTAGGGTTTTAGATTAAGAATGAATTTGGTTATGAA
AAATATACCAAGCTATACCATGAACTCTCTTTCAGGCGTCTTGGGTTGTT
AAAAAGACGTTCCTCTTCAATCTCAAGTAACAAAGAAGGTCAGCCATCCA
AGAAGAAAAGTATGTTGACTTTTTTCACTATGTTCTCTGTATGGAGCTTT
GCCACAACTCGTAACTTCATTTCCCTAATTCAATTTTAAGCacttttttg
ccctttttgcctcataaagttttcttttataaagGTTTTGAGGCTTAgtt
aatttcaatttcagtcACGTCTATTAACTTTCATGCCGTACGCATGAATA
GATGCCACACGTCATTCTCAGACACCCATGTGACTTAGCCGAGCTTTtat
tactgattttgcacaataATCAAAAGgttttaccttaaggaagaaatttt
ggtgggaatttaatttggcgggtggccgaaaaagttttttcagagggtga
aaaattaaatttggcaaaaaggAAGGTTAAGGCCGTTTTCCATTCGGCTC
GAAACTTTTCCGCGCGGAAAACTGACATTAATTTCCATTTTCCGCGCGGA
AAACTTGTatgcttaaaaaccttgaaaagcacttCTTCCTATTCAATTCA
TGAATAGGAAGAAGTATCATAACTCTTTTCTGAATAAGAAAGTGGCTAGA
GTCTAGGTTTTTCTCTATTATGGTAAAGTAAGGTATTTCCATCCCTCTTC
TAGTCTTTCAATAAACTaggttttttcatctttctatCGATTGTTATTGG
TACCAGGTTTTTTCAGTAACTTCAGATTTCGATGAAACCCAGACAAGGGG
GAGTGTTAAAAGCTTGAACCTCCCGAAAGGGGGTTGCCAGTTAGAAGGGG
GTCTTCCTACCTAAAGGTagctctttttgaaaaaggtttgcTTGCGGCAG
TACAAAGTTGTTTTTGCCATGATGGGTCAAAGTCATTGCATTATGTAAAG
GGGTCAGACTAAAACTTCTTTAGAATTTCATAAGGGGGTCTGAATTTTCA
AATGGATTTTTAAGCAGTGGcgtggcgtggtggcagggaGGGGGCAGATG
GGCCAGGTCGATGGGCAAAGCCCCACCAGCGGAGTtcttttgagaagggg
cgccGAAAAATAAGGGGTaccaagaaggatttttcagacGCCCCTGTAGA
AAGATTGgcaattgaaaaacaaaaaatgatgcTCCCtatcacctcaaaaa
ctcaaaattttgttggcttgcttcgctcgcacactctTCTTTGTGTTTAT
GATTTAGGTTTTCTATTATCAAATGAATTTGTAAGCAAATTAAATGTATG
AGAcggggcgccaaaaacaaaaaatctctaaaaagggC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027640-exon-sc0000638-1491911889:21389..21543 | TCONS_00027640-exon-sc0000638-1491911889:21389..21543 | Clytia hemisphaerica | exon |
| TCONS_00027640-exon-sc0000638-1510915933:21389..21543 | TCONS_00027640-exon-sc0000638-1510915933:21389..21543 | Clytia hemisphaerica | exon |
| TCONS_00027640-exon-sc0000638-1575043694:21389..21543 | TCONS_00027640-exon-sc0000638-1575043694:21389..21543 | Clytia hemisphaerica | exon |
| TCONS_00027640-exon-sc0000638-1491911889:23274..24576 | TCONS_00027640-exon-sc0000638-1491911889:23274..24576 | Clytia hemisphaerica | exon |
| TCONS_00027640-exon-sc0000638-1510915933:23274..24576 | TCONS_00027640-exon-sc0000638-1510915933:23274..24576 | Clytia hemisphaerica | exon |
| TCONS_00027640-exon-sc0000638-1575043694:23274..24576 | TCONS_00027640-exon-sc0000638-1575043694:23274..24576 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000638 | supercontig | sc0000638:21389..24576 + |
Blast
The following BLAST results are available for this feature:
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