TCONS_00027653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027653
Unique NameTCONS_00027653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027653 ID=TCONS_00027653|Name=TCONS_00027653|organism=Clytia hemisphaerica|type=transcript|length=1713bp
GCAATTTGACCAATATAGAGTTGTCTGTATTTAAACGGGACCCCTGTTCT
AGCTTCAATACATCTTTTGATTGTTGGAATTGTATAAGAATTTTTTACTA
GAACAGTGAATGTATCTTCATACGCAATCATATTTTGGAATACTTTTAAG
AGGAAACTTTCTTCAACGACAATCACATTCAAAGCTATAGGCTTCATAGA
GTTTTCTTCTATATGAAGATCGAATAAAGGTTGATCTACTTTAAGCTGTC
GGTTTCTGAAAACCAGTGTTTGATCATCCGGTctgattttgtactttttg
ttGTATATATCTTTTGACGTCGTTTACAAATTTAAATTGGTGTGTACTCA
AATCTTCCTCTCTCGTTAAAAACTTTAATGTGAATACATCAAATTTCTTG
ATACCGAGCCCAAGGGTGAACAAGTTATCAAACCTATCGGTAACAGCCAA
ATAAATGATCGCATTGCCGGTAAAGGTGTAGTGGCTAGGTTTTACTTCCT
TTCCCATAGCAATTAAAATTTGTTCTGAGATTGGGATTTTCAATTTCGCa
caaattaaataattaagacGAGCTTTATTAAAGTTTTGGCACATGAAAAC
TGGTAGTACTTTATGTGAGCCGAAAGCTTTAACTGTCAAACGTTTCAAAA
TGGATAGGTGTTTCATTTTACTGGTATTTCTAACTGGTGCTTCTAACTGA
TCGTTGTCGAGTACTGCTAAATGTAATTGGAGCACTTTAATGGTTTTCTT
TTGTTCAAAATTATCTTCTCCTGGGATAAAAACATCTCTTTGTTCAATTA
TATATCTCGTTTCTAATATAGGTTTCATTAAATTGGTGTCGTAAAAAGGC
TCCGGTACTTTGGTGTATGGTTCAAAAAGAAGTTGATCTGAGCACGGTAT
ATCGGTATATTCTTCTATTTCTAGCTGGAGACTTGACACTAGCacctttt
ctgaaaatttaacattgaaacaacaaatcttttgtttaaaaGGACGACAC
CATTCTTGATTTCTATAAGCTATAATTTCAACTCTGAGTTCATCATCATT
CGGACATGGATCGTACGGGTATTGATGGCACTTCCCACATCTGTTCGGCG
TATCCGACATCAATACTGAACCGAACAGTATTTCATTACAGCCCGTGCAT
CGGACTATCCTGTTTGATTGTCCTGTTTTGTAGATGCCAAGACAATAAGT
GCTTGGACATGTTTCGATTTTACCGCTCCAGCGACATCTTCGACTGACGG
AGTTTTTTAAGTACAAACGGTCATAAGTTTCAAGAGATGATTCCATATCT
TATAAAATCACATAATAGTTTCGTTATCACGCTGACTGGAGATCGATTTC
TGCTATTCTTTCAATGTCATTTTGCTGGAGAAATCACGATATGATAAGAT
AATAAAACAATCGGGAATTGTTTCAATCAACGTGGTCACAGAATAAATAG
TGTCTTATATTGAATATAGATGACTCAATTGAAAAACTGAAGCAACCGTG
TATTGTGATTCTTTCTAAAAACGCGGTTCATCCAATTGTTGAAAACGTAC
CAAAGTCATgatcgaaaaaagaaaaattagcttGTTAGCGAATTTAATAA
AAACATCAATACGATACAAGAAGCTTCTGTTTGATGGAAAGCCCTTTGAA
ATACGGAAATATAAAATCACTAAAAGGGGGACAAAATTATTATATCGTAT
GACTGATTCACAG
Run BLAST on NCBI

transcript from alignment at sc0000638:119461..121173+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027653 ID=TCONS_00027653|Name=TCONS_00027653|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at sc0000638:119461..121173+ (Clytia hemisphaerica)
GCAATTTGACCAATATAGAGTTGTCTGTATTTAAACGGGACCCCTGTTCT
AGCTTCAATACATCTTTTGATTGTTGGAATTGTATAAGAATTTTTTACTA
GAACAGTGAATGTATCTTCATACGCAATCATATTTTGGAATACTTTTAAG
AGGAAACTTTCTTCAACGACAATCACATTCAAAGCTATAGGCTTCATAGA
GTTTTCTTCTATATGAAGATCGAATAAAGGTTGATCTACTTTAAGCTGTC
GGTTTCTGAAAACCAGTGTTTGATCATCCGGTctgattttgtactttttg
ttGTATATATCTTTTGACGTCGTTTACAAATTTAAATTGGTGTGTACTCA
AATCTTCCTCTCTCGTTAAAAACTTTAATGTGAATACATCAAATTTCTTG
ATACCGAGCCCAAGGGTGAACAAGTTATCAAACCTATCGGTAACAGCCAA
ATAAATGATCGCATTGCCGGTAAAGGTGTAGTGGCTAGGTTTTACTTCCT
TTCCCATAGCAATTAAAATTTGTTCTGAGATTGGGATTTTCAATTTCGCa
caaattaaataattaagacGAGCTTTATTAAAGTTTTGGCACATGAAAAC
TGGTAGTACTTTATGTGAGCCGAAAGCTTTAACTGTCAAACGTTTCAAAA
TGGATAGGTGTTTCATTTTACTGGTATTTCTAACTGGTGCTTCTAACTGA
TCGTTGTCGAGTACTGCTAAATGTAATTGGAGCACTTTAATGGTTTTCTT
TTGTTCAAAATTATCTTCTCCTGGGATAAAAACATCTCTTTGTTCAATTA
TATATCTCGTTTCTAATATAGGTTTCATTAAATTGGTGTCGTAAAAAGGC
TCCGGTACTTTGGTGTATGGTTCAAAAAGAAGTTGATCTGAGCACGGTAT
ATCGGTATATTCTTCTATTTCTAGCTGGAGACTTGACACTAGCacctttt
ctgaaaatttaacattgaaacaacaaatcttttgtttaaaaGGACGACAC
CATTCTTGATTTCTATAAGCTATAATTTCAACTCTGAGTTCATCATCATT
CGGACATGGATCGTACGGGTATTGATGGCACTTCCCACATCTGTTCGGCG
TATCCGACATCAATACTGAACCGAACAGTATTTCATTACAGCCCGTGCAT
CGGACTATCCTGTTTGATTGTCCTGTTTTGTAGATGCCAAGACAATAAGT
GCTTGGACATGTTTCGATTTTACCGCTCCAGCGACATCTTCGACTGACGG
AGTTTTTTAAGTACAAACGGTCATAAGTTTCAAGAGATGATTCCATATCT
TATAAAATCACATAATAGTTTCGTTATCACGCTGACTGGAGATCGATTTC
TGCTATTCTTTCAATGTCATTTTGCTGGAGAAATCACGATATGATAAGAT
AATAAAACAATCGGGAATTGTTTCAATCAACGTGGTCACAGAATAAATAG
TGTCTTATATTGAATATAGATGACTCAATTGAAAAACTGAAGCAACCGTG
TATTGTGATTCTTTCTAAAAACGCGGTTCATCCAATTGTTGAAAACGTAC
CAAAGTCATgatcgaaaaaagaaaaattagcttGTTAGCGAATTTAATAA
AAACATCAATACGATACAAGAAGCTTCTGTTTGATGGAAAGCCCTTTGAA
ATACGGAAATATAAAATCACTAAAAGGGGGACAAAATTATTATATCGTAT
GACTGATTCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015601XLOC_015601Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027653-exon-sc0000638-1491911889:119461..121173TCONS_00027653-exon-sc0000638-1491911889:119461..121173Clytia hemisphaericaexon
TCONS_00027653-exon-sc0000638-1510915933:119461..121173TCONS_00027653-exon-sc0000638-1510915933:119461..121173Clytia hemisphaericaexon
TCONS_00027653-exon-sc0000638-1575043694:119461..121173TCONS_00027653-exon-sc0000638-1575043694:119461..121173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000638supercontigsc0000638:119461..121173 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0267086	0	0	0	0	0.028392	0.0198779	0	0	0	1.94365	0.814369	0.0361685	0.0908646	0	0	3.10569	4.90199	0	0.0333735	0.0403077	0	0.0678558	0	0.0970353	0.103328	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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