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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027654 ID=TCONS_00027654|Name=TCONS_00027654|organism=Clytia hemisphaerica|type=transcript|length=1311bp
GCAATTTGACCAATATAGAGTTGTCTGTATTTAAACGGGACCCCTGTTCT
AGCTTCAATACATCTTTTGATTGTTGGAATTGTATAAGAATTTTTTACTA
GAACAGTGAATGTATCTTCATACGCAATCATATTTTGGAATACTTTTAAG
AGGAAACTTTCTTCAACGACAATCACATTCAAAGCTATAGGCTTCATAGA
GTTTTCTTCTATATGAAGATCGAATAAAGGTTGATCTACTTTAAGCTGTC
GGTTTCTGAAAACCAGTGTTTGATCATCCGGTctgattttgtactttttg
ttGTATATATCTTTTGACGTCGTTTACAAATTTAAATTGGTGTGTACTCA
AATCTTCCTCTCTCGTTAAAAACTTTAATGTGAATACATCAAATTTCTTG
ATACCGAGCCCAAGGGTGAACAAGTTATCAAACCTATCGGTAACAGCCAA
ATAAATGATCGCATTGCCGGTAAAGGTGTAGTGGCTAGGTTTTACTTCCT
TTCCCATAGCAATTAAAATTTGTTCTGAGATTGGGATTTTCAATTTCGCa
caaattaaataattaagacGAGCTTTATTAAAGTTTTGGCACATGAAAAC
TGGTAGTACTTTATGTGAGCCGAAAGCTTTAACTGTCAAACGTTTCAAAA
TGGATAGGTGTTTCATTTTACTGGTATTTCTAACTGGTGCTTCTAACTGA
TCGTTGTCGAGTACTGCTAAATGTAATTGGAGCACTTTAATGGTTTTCTT
TTGTTCAAAATTATCTTCTCCTGGGATAAAAACATCTCTTTGTTCAATTA
TATATCTCGTTTCTAATATAGGTTTCATTAAATTGGTGTCGTAAAAAGGC
TCTGGTACCTCGGTGTACGGGTCAAAAAGAAGTTGGTTTGAGCACGGTAT
GTCGGTATATTCTTTGATTTCTTGCTGGAGACTAAATACTAATACCTCTT
CTGAAAATTTAACATTGAAACAACAAATCTTTGGTTGATAAAGACGGCGC
AATCCTTCTTGAGTTCTATGAGCTAAAATTTCAACTCTGAGTTCATCATC
ATTCGGACATGGATCGTACGGGTATTGATGGCACTTTCCACATCTGCTCG
GCGTACCTGACATCAATACTGAACCGAACAGTATTTCATTACAGCCCGTG
CATCGGACTATCCCGTTTGATTGCTCTGTTTTGTAGATGTCAGAACAATA
TCCGCTTCGACATGTTTCGATTTTATCGCCACAGCGACATCGTCGACTGA
CGGAGTTTTTTAAGTACAAACGGTCATAAGTTTCCTGAGATGACTCCATA
TCTTATAAAAT Run BLAST on NCBI transcript from alignment at sc0000638:119461..126686+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027654 ID=TCONS_00027654|Name=TCONS_00027654|organism=Clytia hemisphaerica|type=transcript|length=7226bp|location=Sequence derived from alignment at sc0000638:119461..126686+ (Clytia hemisphaerica)
GCAATTTGACCAATATAGAGTTGTCTGTATTTAAACGGGACCCCTGTTCT
AGCTTCAATACATCTTTTGATTGTTGGAATTGTATAAGAATTTTTTACTA
GAACAGTGAATGTATCTTCATACGCAATCATATTTTGGAATACTTTTAAG
AGGAAACTTTCTTCAACGACAATCACATTCAAAGCTATAGGCTTCATAGA
GTTTTCTTCTATATGAAGATCGAATAAAGGTTGATCTACTTTAAGCTGTC
GGTTTCTGAAAACCAGTGTTTGATCATCCGGTctgattttgtactttttg
ttGTATATATCTTTTGACGTCGTTTACAAATTTAAATTGGTGTGTACTCA
AATCTTCCTCTCTCGTTAAAAACTTTAATGTGAATACATCAAATTTCTTG
ATACCGAGCCCAAGGGTGAACAAGTTATCAAACCTATCGGTAACAGCCAA
ATAAATGATCGCATTGCCGGTAAAGGTGTAGTGGCTAGGTTTTACTTCCT
TTCCCATAGCAATTAAAATTTGTTCTGAGATTGGGATTTTCAATTTCGCa
caaattaaataattaagacGAGCTTTATTAAAGTTTTGGCACATGAAAAC
TGGTAGTACTTTATGTGAGCCGAAAGCTTTAACTGTCAAACGTTTCAAAA
TGGATAGGTGTTTCATTTTACTGGTATTTCTAACTGGTGCTTCTAACTGA
TCGTTGTCGAGTACTGCTAAATGTAATTGGAGCACTTTAATGGTTTTCTT
TTGTTCAAAATTATCTTCTCCTGGGATAAAAACATCTCTTTGTTCAATTA
TATATCTCGTTTCTAATATAGGTTTCATTAAATTGGTGTCGTAAAAAGGC
TCCGGTACTTTGGTGTATGGTTCAAAAAGAAGTTGATCTGAGCACGGTAT
ATCGGTATATTCTTCTATTTCTAGCTGGAGACTTGACACTAGCacctttt
ctgaaaatttaacattgaaacaacaaatcttttgtttaaaaGGACGACAC
CATTCTTGATTTCTATAAGCTATAATTTCAACTCTGAGTTCATCATCATT
CGGACATGGATCGTACGGGTATTGATGGCACTTCCCACATCTGTTCGGCG
TATCCGACATCAATACTGAACCGAACAGTATTTCATTACAGCCCGTGCAT
CGGACTATCCTGTTTGATTGTCCTGTTTTGTAGATGCCAAGACAATAAGT
GCTTGGACATGTTTCGATTTTACCGCTCCAGCGACATCTTCGACTGACGG
AGTTTTTTAAGTACAAACGGTCATAAGTTTCAAGAGATGATTCCATATCT
TATAAAATCACATAATAGTTTCGTTATCACGCTGACTGGAGATCGATTTC
TGCTATTCTTTCAATGTCATTTTGCTGGAGAAATCACGATATGATAAGAT
AATAAAACAATCGGGAATTGTTTCAATCAACGTGGTCACAGAATAAATAG
TGTCTTATATTGAATATAGATGACTCAATTGAAAAACTGAAGCAACCGTG
TATTGTGATTCTTTCTAAAAACGCGGTTCATCCAATTGTTGAAAACGTAC
CAAAGTCATgatcgaaaaaagaaaaattagcttGTTAGCGAATTTAATAA
AAACATCAATACGATACAAGAAGCTTCTGTTTGATGGAAAGCCCTTTGAA
ATACGGAAATATAAAATCACTAAAAGGGGGACAAAATTATTATATCGTAT
GACTGATTCACAGAGATATAAAAAGATGCCCACGTTAAATGGATGGTTCA
TTATAAATCAACGTCACATAATAGGAGTAAGATTTATGTGATTTAAGTCT
ATTATGACTGCTTACTTAAGACAACATATTATTGCAGAAGTATACAGCAC
TGTAGGCAACAGCAACAGAATGAGAAGATTAATAAAATTAATTAGACTGT
AAAATGTTTCTTAATTTGCTCCCATGATTAAAAACTAGGTCAGCGTGTTT
CAAACACACTGTTGGCGAACGCTTATTTCCGACAAAATCATCGGAGAAAG
AACCTTTTGTTTTGCAGTGTTCactaagaaaataattttcactttGTCCA
TTTTTTCGTTTAGTCGTAGAAGGGCAAGGTCGATGGCTTATTACTTTACA
CCCTGTGATGGAGAACTGTCTCTGATAAAATAGAGCAAGAATAGAGCAGG
TATACGAAATTATAAAGTCGAGTAAAATGGTCGAGTGAACCTTACCTCTT
TAAAAGCTACTTTATCGTTGTTTTGTCTTACAGGTCATGCAAATTCAATT
CGAGGCACTACTGATTTTACTATCAAAATCGTtttagtaaaaaacaaaat
gtttacgcatgcgttttaaaacaGCTGTGAAATTATTGTCTCGCTTAAAG
TAAATCAATTTAACTGCTCTAAGCATAATGTGGCATAATGAACATGGATA
AATGAGACGAACATTGAAATTAGAATGATAGGGGAATGACGTCACAAACA
ATACAAAACTAAAAGTGATGAATCATTATTAGTCAGTACATAACACATGA
TCAAAGCAAAAGTAAAGCGTAGACCCTTAAGAAAAAAGCTACACTTTAAG
GAAGGGGATGGGATATAGCctggaaaaaattttggaaaagggTTAAGACG
TCAATGAGGACATCTTAGGCGGAGTACTTCCTGTGAGCCATAAAACAAAT
CGTGAAGTGAGGTGTGGTGTAGAgagtttttttgactttgccaaAGTCCG
AAAGCTATTTTCATTTATGTATTTGTGGTGGCTAAATGTGTAAAAGGTGG
ATATTTGATCAAAGggtgattggaaagataaacttaGATAAGATTGATAA
GGTGGTATTGAGTAATAAATTTGTGTGATGTTTTAATCGAGAGAGACAGT
GGCCTTTCCTAAGGAGTgataattttaaataattttaaataaatggaGTG
AAGAtgagtgaaaatgaaaattgggaaaaaaatgcgtgaatgcgtgaatt
gaaaaaactagcgtgaacgtgaaaattcactttttaattgcgtgaatgcg
tgaatctgggctattttgtgcttgaatacgtgaattttctcttttttcca
ccgatcatgtgcagttttcccgattaTCCAATGTTTCCCAAAAAATTTct
gatttcctgaaaaatcgggttattgcatgaaactcgaggaaaatttgcgt
gaatgcgtgaatttcgaaaaaaaattgcgtgattgcgtgaattgagggtc
tgCTGGGGGGCCTCTTTAATGACGTTGAAAAGCACAAAAATTGATGTATT
TTGTTAAAGCACAATAGTGTTCGtttgttttttcacatttaaaaatatca
tttaatATAAACTTTCCATGAAATTGACAGCTTGTTTTTCCTTTGCCTGT
GCactcctttgtttttcaattttcaaacagCTAGTTGTGAAAGCCCCCTT
TCTCTCATAAACAAACGGCTGTCGTCAGTTCGGCACGATACCTTATATTT
GAGGTATTTAAAGGACCCTATATTTTTAGAACCGTCCCTTTAtcaaggaa
ttattatagacactggaaaaacaacttgCTGATTtctgccaatttctcat
gtacaatccttgtccgcagtaatggcattattgttcaccctccttccacc
attaaCATGAATCttcgtagcattttaattgcatttctcatcaaaataca
atCACCTAATTCCTAAACAAGCTTTTAAGTTCTCCTTTGATAGtcaaact
catctagttaaTTCCTAATTATGCGTCGttatgccgttttaaaatgcaaG
GAAGATGCAAAAagatgctatgtataagaaattaaatatttgacaccaga
aatttctAAACTTCAACCTGAAAAAATCcaccacagtggagctatgagac
tcacATCCTACATGTCAATCTCAGCTGTTCTCagagaaatattggaaaga
tattcccaattcaaaatttcgtgtcattataagcatttttcacCCGAGGC
AagagtcaaaactataaagatatatcagatttttactgttaGACTTGCAA
CTCAGCAATCctaaacacacccttacagtgtatccagctaaaagaaaaCC
CTTGTagggcattttttcaaaactatgccctttacagtgcatttctaggg
tctcgaaaaacctacccttaagggcggcacatgccaTAGGTCGGACCATT
TGAGTGCCCCCCCGGATCACTACTTGGATATTACCATCCAATAGATGCAT
GCATCTAACATATAAGGGGCGACAACCTTTTCCATGGACcgttaacccta
ttattatcaggctttttcggattttgtattctaaaggggggtgttttcca
ccagccttgcataacttttgatctagagaaggtATGGACTTGAAAATTGG
CACAAATGTTCTCTGCTATAAAaagagttcatagaaaaaaatttgggttg
atgacgtcatcataaggaTGATGATGttatcacaaagtttcacaattatc
gctgaccaatgaaaaagtactattcaataaaatagtaattaaagttgaac
gaatggagatttttcaattctgttttaaatttctaaaagccaaaaagaat
atctttaatagatttgccggtttttaacatactaataaaatcgaggctta
aaatccatgcagaaattgagtaaattttttcaaaaaacaatgacgtcatt
tttgatgatgtcagcagtttttgaaaatttttaaaataattttaaaattt
atcattgatacctaaaacctgtcaaaatttgatttcagttggatgcctag
atcaaaagttatgctaaatttaagatttttggattttacagggttttagc
tggattttatgatatgcctgcacaaaaaagtaaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNccccccccccccccgataaaaatagggt
taaggatGGATATGAATATCTATTTATTTAATGTTGGAATAATTTAACAA
TAATTTTAATAGTAAAActagaaaaaaataactcaaatACTCAACTTGTG
CTTGTAATTGTATGtggaaatttgatttaaaaaagtttctattacATAGT
TGTTTTGTATGCGTTCTATTACAAGTTATTACAAGTTTCATTAGATGCTA
CAAATTTCCAAAACTGTATAATTCtcgcaaaaaagattttcagatttttt
aacaaataaaaacgTAGATAGTATCCTTTTCAAAAGTCCGAGTTTTTATT
TTGGGTTTAGCATCGCTAACTAGTAACGAAAAGTCAAGGTCATTTACATC
AATCTGCAAGTGCAAGCAGcatatttatttataaacaaactTAACTCATT
GACCGTCACTAGCAAATCACATGTCTTTAGATCAATCTTGACCTCGTTTT
CATCCCTGATTTCGAGCAGTTGACATTTCTTTAAACTGTGCAATTGCAGA
ATTTCTTTGGTCAAATCTTTGACTGTTTTCGGgcaatttttgtcaataat
cTCAGAATATTCCACCTTTTCATCGGCATCTACGAAATGAAGTCGTATCA
TTAACTTTTGTTTGAGAACAAGATCAGGCCATTCTGTatcaaataagaaa
tttttgagaTAAGGCCACTCTAGAGTAAACATGTAATCTTGAAGAGTTTT
CTCATCATCATCCAGTACTGTTGTACCAATATAAAGTTGTCTGTATTTAA
ACGGGACCCCTGTTCTAGCTTCAATACATCTTTTGATTGTTGAAATTGTA
TAAGAATTTTTTACTAGAACAGTGAATGTATCTTCATACGCGATCATATT
TTGGAATACTTTTAAGATGAAACTTTCTTCAACAACAATCACATTCAAAG
CTATAGGCTTCATAGAGTTTTCTTCTATATGAAGATCGAATAAAGGTTGG
TCTACTTTAAGCTGTCGGTTTCTGAAAACCAGTGTTTGATCATCCGGTCT
GATTTTGTACTTTTGGTGTATATATCTTTTGACGTCTTTTACAAATTTAA
ATTGGTGTGTACTCAAATCTTCCTCTCTCGTTAAAAACTTTAATGTGAAC
ACATCAAATTTCTTGATACCGAGCCGAAGGGTGAACAAGTTATCTTTAAA
CCTATCGGTAACTGCCAAATAAATGACCACATTGTCGCTAAAGACGTCGC
TAGGCTTTACTTCTTTTCCCATAGCAATTAAAATTTGTTCTGAGATTggg
attttccatttttcatgtATTAAATGATTAAGACGAGCTTTATTAAAGTT
TTGGCACATGAAAACTGGTAGTACTTTATGTGAGCCGAAAGCTTTAACTG
TCAAACGTTTCCAGATGGATAGGTTTTTCATTTTACTGATATTTCTAACT
GGTGCTTCTAACTGATCATTGTCGAGTACTGCTAAATTTAATTGGAGCAC
TTTAATGGTTTTCTGCTGTTCAAAATTATCTTCTCCTGGAATAAAAACAT
CTCTTTGTTCAATTATATATCTCGTTTTTAATATAGGTTTCATTAAATTG
GTGTCATAAAAAGGCTCTGGTACCTCGGTGTACGGGTCAAAAAGAAGTTG
GTTTGAGCACGGTATGTCGGTATATTCTTTGATTTCTTGCTGGAGACTAA
ATACTAATACCTCTTCTGAAAATTTAACATTGAAACAACAAATCTTTGGT
TGATAAAGACGGCGCAATCCTTCTTGAGTTCTATGAGCTAAAATTTCAAC
TCTGAGTTCATCATCATTCGGACATGGATCGTACGGGTATTGATGGCACT
TTCCACATCTGCTCGGCGTACCTGACATCAATACTGAACCGAACAGTATT
TCATTACAGCCCGTGCATCGGACTATCCCGTTTGATTGCTCTGTTTTGTA
GATGTCAGAACAATATCCGCTTCGACATGTTTCGATTTTATCGCCACAGC
GACATCGTCGACTGACGGAGTTTTTTAAGTACAAACGGTCATAAGTTTCC
TGAGATGACTCCATATCTTATAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027654-exon-sc0000638-1491911889:119461..120308 | TCONS_00027654-exon-sc0000638-1491911889:119461..120308 | Clytia hemisphaerica | exon |
| TCONS_00027654-exon-sc0000638-1510915933:119461..120308 | TCONS_00027654-exon-sc0000638-1510915933:119461..120308 | Clytia hemisphaerica | exon |
| TCONS_00027654-exon-sc0000638-1575043694:119461..120308 | TCONS_00027654-exon-sc0000638-1575043694:119461..120308 | Clytia hemisphaerica | exon |
| TCONS_00027654-exon-sc0000638-1491911889:126224..126686 | TCONS_00027654-exon-sc0000638-1491911889:126224..126686 | Clytia hemisphaerica | exon |
| TCONS_00027654-exon-sc0000638-1510915933:126224..126686 | TCONS_00027654-exon-sc0000638-1510915933:126224..126686 | Clytia hemisphaerica | exon |
| TCONS_00027654-exon-sc0000638-1575043694:126224..126686 | TCONS_00027654-exon-sc0000638-1575043694:126224..126686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000638 | supercontig | sc0000638:119461..126686 + |
Blast
The following BLAST results are available for this feature:
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