TCONS_00027658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027658
Unique NameTCONS_00027658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1724

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027658 ID=TCONS_00027658|Name=TCONS_00027658|organism=Clytia hemisphaerica|type=transcript|length=1724bp
ACAGAAATTTTGAAGATCTATGCTTTGAACAAGTTCCTCAGGTGGTGGTT
CTTCTACATTGATAGCTTTGGTGACCCCAACATCAGCAGTTACTTCTTGA
TTAATTTCTTGAGTTTGGTTTTCCTCGGAATCCTGGCTTTCCTTGGTTTC
TGGGATCTCTTGGGTTGCTTCAGATTGAAAAGCATTTTCAATTGTTTCTG
TTGCTAGCTCTTGTTCACTTTCAATACCTTTGGGGAACTCAACCAGCTCA
ACAGTTTCATGCTGCTGATGTGACCAAATAGGTTGATATTTCATGTTGCC
AAGCTTTTGGCAATTGTAAACATAGACCATGTGTGCGACCATAGCACATG
CACTTTGTACTCCAAGAAATAAGGGCTGAAACACTTTCGATAAGAGGTCA
AAGATTTTCTTAGTCTTTTCTTTGACAAGTTCTTGCCCTTTAGTCGGTAC
ACACCCATTTCGTAcatgaagcaaaatattatcCATTACATCAATAAAGG
ATTCATTTAACAATGCACCATTTTCCTCTTTCGACCACTTGGAATAGAAA
GTGTTCAAGTTGGAGATCATTTGTAATTGGTTTGCATTTTCGGTGACAAG
ATTGGTTTTAAAAACACTGTCAAGATCTTTGTAAATTTCATGTTTGTCAT
CATTGCAATTAATCATTTCTTTCAATAGATTTTTTGCATAATCAAGATCA
AACACAACACTTGCATTGGGAAAAGCTTCTAATATACTGTCCCTTGAGAC
GCAACAATAATTACTCATTGATATAGTTTCTGTTTCAGGATTAAAGGGCG
CAAGGGCAACAAGACATTGTATGATTTGGTCAATACATACATCTTTTGTT
AAACCGTAGGCTTTGATACATCTTTTGTTAAACCGTAGGCTTTGATACAT
CCAAACTCATTAAAAATCATAAACATgctatcaaaaagtttgttccaTTT
GTAAGTGTTTTTAGGGCCAGCGGTAAGACGTTCTTTGACCCCAATATTTA
CATTAAACTTTTCACCATTTGTAACAACATGAAGTTGAGTAAATGGAATT
CTATCCATTTGGGACTGGTAAAGATCTTTGTTTAGATCAAATTGATTCAG
AAAGTGATGGCGAATTATTTGATCTGATGGTGATATAACCATGCTGTCTT
CAAGTTCTGGTAGATTAGGGTCAAATATAAAACGTTTTCGTTCATATTCA
TCTGTAAACATACCTTGCATAATGTTCTCAATTTCTTTGAATGAATGTCC
TTGCTCGAGCAGTTTGATTGCAAAATCATAACAAGCAGTTGTCATTCCAG
CAGCATGGGTTAGAAGGAAAGGCACCATTTGAGAAGGAAGCTGCTTTAAA
AAGCCAACATGGTAAGAGACAACATTGTGGCCTTTGCTACAAGAATAAAA
CTTGCCAACTAGCGCACACCACCAGGCTCTATCCCATAACATACGAGGGG
TTTGTTTACCGCGAACACACCAAGTACTCTTGCGGACAGCATTGCGTATA
TCTTCATCTTGATGACAATGTGGACAATAAAGCTCTTGGTTAAATTGGGA
TAAGGGATCCCAAATCATAACATATGGAAGAAGGGCTAAGGTTTGGCTTG
GAAGTGTATCAGGAGCATATTCTGTAAGGTCCacatattttgttgttttg
cacTCAGGCTTTCTTTGCTGTAGAAGGCTCCTTATCACATCCAGAATTTC
TGTAGTCAGTTTCATAATGACCTG
Run BLAST on NCBI

transcript from alignment at sc0000638:9503..12084-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027658 ID=TCONS_00027658|Name=TCONS_00027658|organism=Clytia hemisphaerica|type=transcript|length=2582bp|location=Sequence derived from alignment at sc0000638:9503..12084- (Clytia hemisphaerica)
ACAGAAATTTTGAAGATCTATGCTTTGAACAAGTTCCTCAGGTGGTGGTT
CTTCTACATTGATAGCTTTGGTGACCCCAACATCAGCAGTTACTTCTTGA
TTAATTTCTTGAGTTTGGTTTTCCTCGGAATCCTGGCTTTCCTTGGTTTC
TGGGATCTCTTGGGTTGCTTCAGATTGAAAAGCATTTTCAATTGTTTCTG
TTGCTAGCTCTTGTTCACTTTCAATACCTTTGGGGAACTCAACCAGCTCA
ACAGTTTCATGCTGCTGATGTGACCAAATAGGTTGATATTTCATGTTGCC
AAGCTTTTGGCAATTGTAAACATAGACCATGTGTGCGACCATAGCACATG
CACTTTGTACTCCAAGAAATAAGGGCTGAAACACTTTCGATAAGAGGTCA
AAGATTTTCTTAGTCTTTTCTTTGACAAGTTCTTGCCCTTTAGTCGGTAC
ACACCCATTTCGTACATGAAGCAAAATATTATCCATTACATCAATAAAGG
ATTCATTTAACAATGCACCATTTTCCTCTTTCGACCACTTGGAATAGAAA
GTGTTCAAGTTGGAGATCATTTGTAATTGGTTTGCATTTTCGGTGACAAG
ATTGGTTTTAAAAACACTGTCAAGATCTTTGTAAATTTCATGTTTGTCAT
CATTGCAATTAATCATTTCTTTCAATAGATTTTTTGCATAATCAAGATCA
AACACAACACTTGCATTGGGAAAAGCTTCTAATATACTGTCCCTTGAGAC
GCAACAATAATTACTCATTGATATAGTTTCTGTTTCAGGATTAAAGGGCG
CAAGGGCAACAAGACATTGTATGATTTGGTCAATACATACATCTTTTGTT
AAACCGTAGGCTTTGATACATCCAAACTCATTAAAAATCATAAACATGCT
ATCAAAAAGTTTGTTCCATTTGTAAGTGTTTTTAGGGCCAGCGGTAAGAC
GTTCTTTGACCCCAATATTTACATTAAACTTTTCACCATTTGTAACAACA
TGAAGTTGAGTAAATGGAATTCTATCCATTTGGGACTGGTAAAGATCTTT
GTTTAGATCAAATTGATTCAGAAAGTGATGGCGAATTATTTGATCTGATG
GTGATATAACCATGCTGTCTTCAAGTTCTGGTAGATTAGNGTTTCATGCT
GCTGATGTGACCAAATAGGTTGATATTTCATGTTACCAAGCTTTTGGCAA
TTGTAAACATAGACCATGTGTGCGACCATAGCACATGCACTTTGTACTCC
AAGAAATAAGGGCTGAAACACTTTCGATAAGAGGTCAAAGATTTTCTTAG
TCTTTTCTTTGACAAGTTCTTGCCCTTTAGTCGGTACACACCCATTTCGT
ACATGAAGCAAAATATTATCCATTACATCAATAAAGGATTCATTTAACAA
TGCACCATTTTCCTCTTTCGACCACTTGGAATAGAAAGTGTTCAAGTTGG
AGATCATTTGTAATTGGTTTGCATTTTCGGTGACAAGATTGGTTTTAAAA
ACACTGTCAAGATCTTTGTAAATTTCATGTTTGTCATCATTGCAATTAAT
CATTTCTTTCAATAGATTTTTTGCATAATCAAGATCAAACACAACACTTG
CATTGGGAAAAGCTTCTAATATACTGTCCCTTGAGACGCAACAATAATTA
CTCATTGATATAGTTTCTGTTTCAGGATTAAAGGGCGCAAGGGCAACAAG
ACATTGTATGATTTGGTCAATACATACATCTTTTGTTAAACCGTAGGCTT
TGATACATCCAAACTCATTAAAAATCATAAACATGCTATCAAAAAGTTTG
TTCCATTTGTAAGTGTTTTTAGGGCCAGCGGTAAGACGTTCTTTGACCCC
AATATTTACATTAAACTTTTCACCATTTGTAACAACATGAAGTTGAGTAA
ATGGAATTCTATCCATTTGGGACTGGTAAAGATCTTTGTTTAGATCAAAT
TGATTCAGAAAGTGATGGCGAATTATTTGATCTGATGGTGATATAACCAT
GCTGTCTTCAAGTTCTGGTAGATTAGGGTCAAATATAAAACGTTTTCGTT
CATATTCATCTGTAAACATACCTTGCATAATGTTCTCAATTTCTTTGAAT
GAATGTCCTTGCTCGAGCAGTTTGATTGCAAAATCATAACAAGCAGTTGT
CATTCCAGCAGCATGGGTTAGAAGGAAAGGCACCATTTGAGAAGGAAGCT
GCTTTAAAAAGCCAACATGGTAAGAGACAACATTGTGGCCTTTGCTACAA
GAATAAAACTTGCCAACTAGCGCACACCACCAGGCTCTATCCCATAACAT
ACGAGGGGTTTGTTTACCGCGAACACACCAAGTACTCTTGCGGACAGCAT
TGCGTATATCTTCATCTTGATGACAATGTGGACAATAAAGCTCTTGGTTA
AATTGGGATAAGGGATCCCAAATCATAACATATGGAAGAAGGGCTAAGGT
TTGGCTTGGAAGTGTATCAGGAGCATATTCTGTAAGGTCCACATATTTTG
TTGTTTTGCACTCAGGCTTTCTTTGCTGTAGAAGGCTCCTTATCACATCC
AGAATTTCTGTAGTCAGTTTCATAATGACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015605XLOC_015605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027658-exon-sc0000638-1575043694:11216..12084TCONS_00027658-exon-sc0000638-1575043694:11216..12084Clytia hemisphaericaexon
TCONS_00027658-exon-sc0000638-1575043694:9503..10357TCONS_00027658-exon-sc0000638-1575043694:9503..10357Clytia hemisphaericaexon
TCONS_00027658-exon-sc0000638-1510915933:11216..12084TCONS_00027658-exon-sc0000638-1510915933:11216..12084Clytia hemisphaericaexon
TCONS_00027658-exon-sc0000638-1510915933:9503..10357TCONS_00027658-exon-sc0000638-1510915933:9503..10357Clytia hemisphaericaexon
TCONS_00027658-exon-sc0000638-1491911889:11216..12084TCONS_00027658-exon-sc0000638-1491911889:11216..12084Clytia hemisphaericaexon
TCONS_00027658-exon-sc0000638-1491911889:9503..10357TCONS_00027658-exon-sc0000638-1491911889:9503..10357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000638supercontigsc0000638:9503..12084 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.60081	7.38396	6.83407	6.02785	4.69846	3.7317	6.01366	5.86913	4.22696	4.81796	4.14032	4.52416	3.71712	5.02179	5.12941	5.16519	5.75963	4.99691	2.54895	3.01536	4.58614	4.73839	23.955	21.1525	5.17582	6.33192	3.99209	2.90667	17.0172	23.7585
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top