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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027659 ID=TCONS_00027659|Name=TCONS_00027659|organism=Clytia hemisphaerica|type=transcript|length=3895bpRun BLAST on NCBI protein sequence of TCONS_00027659-protein >TCONS_00027659-protein ID=TCONS_00027659-protein|Name=TCONS_00027659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=717bp MAAEPLTIEELIDRATDINNHGSSVEAAQRVANQVNKEIGGCSTAVRCLIRun BLAST on NCBI transcript from alignment at sc0000638:44220..65720- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027659 ID=TCONS_00027659|Name=TCONS_00027659|organism=Clytia hemisphaerica|type=transcript|length=21501bp|location=Sequence derived from alignment at sc0000638:44220..65720- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000638:44220..65720- >TCONS_00027659 ID=TCONS_00027659|Name=TCONS_00027659|organism=Clytia hemisphaerica|type=CDS|length=40926bp|location=Sequence derived from alignment at sc0000638:44220..65720- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027659 vs. Swiss-Prot (Human)
Match: GGA1 (ADP-ribosylation factor-binding protein GGA1 OS=Homo sapiens GN=GGA1 PE=1 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 3.689e-73 Identity = 156/369 (42.28%), Postives = 230/369 (62.33%), Query Frame = 1
Query: 985 AAEPLTIEELIDRATDINNHGSSVEAAQRVANQVNKEIGGCSTAVRCLIQRLQLHQEVVTLQTLMVAESCVQNCGSKFHSEIGKYKFINELIKLLSPKYDGDITPPAVKERVKELLFSWYCGLPQEKKIAEAYKMLKQQGIIKHDPVDPTRTK-PQSYKEQKSVI-EDDDSSQLLATLLASNDPEDLHSANKLIKSMVKQEEDRLDRVCKRVQDLETVSNNVKLLDEMLQKFDSSPSAVHDDLELMHDLYESCLKLRPELFXXXXXXXXXXXXXMAEILSANDELTRVIDSYKEKILLQK--GPSKANKPFNVPNDTNSSALLDL-GLDGPVSGAS--------NDTNTATNENAGNSLLDEQFKLLGI 2052
A EP T+E I+RAT+ N + Q+N++ G A R L ++Q QE +Q L V E+C+++CG +FH E+GK++F+NELIK++SPKY G T VK ++ ELL+SW GLP+E KIAEAY+MLK+QGI+K DP P T P K+VI ED++ S++LA LL S+ PEDL +ANKLIK MV++++ R++++ KRV +E V+NNVKLL EM+ +A +LM +LY+ C ++RP LF + +D D+++AEIL AND LT+VI+ YK+ + ++ G + A ++P T SALLDL GLD P +G + + + +A SLLD++ LG+
Sbjct: 4 AMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLF-RLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAG---SIPGST--SALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLGL 366 HSP 2 Score: 106.301 bits (264), Expect = 3.378e-23 Identity = 57/133 (42.86%), Postives = 91/133 (68.42%), Query Frame = 1
Query: 2725 TVPLEALQPVSSPTPSLVYEKNGLKTLLHMAKDTRDTANSNVXXXXXXXXXXXXXAVTDFSIQVAVPKVMRVKLQPATSTQLNAYNPILPPPSISQVMLIANPSKESIRLRFRVSYKLNGIAYNENSSIDQLP 3123
TVPLE+++P S+ P VY+++G + L H A+D S+V+ ++S +ST+ + + Q AVPKVM+VKLQP + T+L A+NPI+ P +I+QV+L+ANP KE +RLR+++++ + YNE +DQ P
Sbjct: 501 TVPLESIKP-SNILPVTVYDQHGFRILFHFARDPL-PGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPPSGTELPAFNPIVHPSAITQVLLLANPQKEKVRLRYKLTFTMGDQTYNEMGDVDQFP 631 The following BLAST results are available for this feature:
BLAST of TCONS_00027659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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