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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027671 ID=TCONS_00027671|Name=TCONS_00027671|organism=Clytia hemisphaerica|type=transcript|length=5500bp TTCTACGTTTTCGACCTCCAATTATCCTTTAACTACTTGTCTCTAAGGAG CAGCTTTTGTGAACGTTTTAAAACCTGACTAATTCCTTGGGgaattcaaa atctttttaaaaaacagAGAATTTTTTAGAAACTTCACATTAGCTACTGA ACCGTTTATGTGTAAGTATGCCTCGAAGGAGAATTTTATCGACTTCAGAA GAAGACAATGGTGATGGTGATACGTTCGACAAACTGAAAGAGTACTTGGA TCAACAATTCTTAGATTTCAAGGACGACACCACCGACAAAagaaaagaca agaaagaaaaagagttCAACAAACAATCGTGTAAGATTCAATATCAGTTT AATGATGATCAGCTTCGCCTAGTCGAGAAAGCATTAAGTCACCTTAAGCA CAAGAACATTAAGAAGGCAAAAAGTAAACTAAAAGATCTATCAAAAAACC TCAAGAAAAGAAACAAACTTATTAAAATTGCTGATAAATCCCCCGGTGGA TGGAGTACTGTTAAAGAGTACGAAACCGATAGCGTTGCATCCGACACCGC CGACGAGAAGCGTCTGAAGAGAGCTGAAAAACGCGCACTGGAAAGAATCC AATCCGAACCTAAACCTTCGAAGAGATTCAAGCAATCCTCAACTTTGTCC CGGAACCCCGAGTCGTCTTCTGGGAGCCGTTACACGACAAAATACAGCAA TTCCAGATCGAATGAACGTTGCCTTGCATGTAACAGATATGGCCACTGGC GACACGAGTGCCCTGAAAGAAAATCCAGAAACTAAAGATAAGTGCAATGC TAATTTTCTTGTTAATTCTGAAACAAACTCTGTAAAGGGAAAACTTAAGC CTAAACTGGATTTCTGTTCAAATACTTTGAAGGCACCGAAGTACATTCTA GACATCATCAAATACGGATATTTTTTGCCATTTGTCGACATTCCTGAACG AAGCAtttcaaacaacaacaaatccgcactcgaaaacaaagaatttGTTT CAGAATCGATAAGGGATTTACTTCAAGACGGCTCGGCCAGGGAGGTAGAG TTTGCACCAAAGGTTATTAGTCCCCTTTCAGTTGCTTCAAACAGCGTTGG AAAGAAAAGGCTAATTCTCGATTTACGTTATGTCAACGCTCACCTATTTA AAGAGAGGATTTCGTTCGATGACTGGGGGTCACTCAAAAATCTTATTTCC GAAAATGGATTTGCTTATAAATTTGACTTGAGGAAGGGTTATTATCATGT CGAAATAGCTGAGGCTCACCAAACCTATCTCGGATTCTCTTGGAATCTTG ATGGCagagaaaagtttttcatattttgtgtCCTACCTTTTGGATTGTCT TCTGCCCCAATGATTTTCACAAAATTGCTGAGACCCTTGGTCTCCTACTG GCACGACCATGGCATTAAGATATGCGTTTTTCTCGACGATGGGGGCGGGA CAGAGTCTAATTTAGTCAAAGCTATTTCGAGCTCCAACTTTGTCAGGCGG TCACTTAAATCGTCTGGTTTTGTAGTAAACGAAGAAAAATCTGTTTGGCA CCCCCAGAAACGACTGACATGGCTGGGAGTAANAACCTAAACCTTCGAAG AGATTCAAGCAATCCTCAACTTTGTCCCGGAACCCCGAGTCGTCTTCTGG GAGCCGTTACACGACAAAATACAGCAAATCCAGATCGAATGAACGTTGCC TTGCATGTAACAGATATGGCCACTGGCGACACGAGTGCCCTGAAAGAAAA TCCAGAAGAAACTCCAGAAACTAAAGATAAGTGTAATTCCAATTTTCTTG TTAATTCTGAAACAAACTCTGTAAAAGGAAAACTTAAGCCTAAACTGGAT TTCTGGTCAAAGACTTTGAAGGCACCGAAGTANGAAAATAGCAGGCTCTA TAATTTCTATGAAATTTGTATTAGGCGATATTACTCAATTAAAATCTCGT TATTTGTACGAAGCAATCGATAGCGAGGTGGCTTGGGACGCTCCCATTTC ACTAAAGAAATTCCCACAGGCAACTAGAGAGCTTGAATTTTGGTTGGGAA ATTTACGTCGGCTTAATCACAGATTTATTTCGGAACACAGGGCCACCTTT GTAAACGTATATTCTGACGCAAGTCATTCTGGTATCGGAAGTCATATCCC AGCCCTAGGGGCGGAAAGCCATAGAAATCTTGACCCAAAAGAGCAAGGTC TTAGCTCAACATGGAGAGAACTTTCGGCTATTTTATACAGTCTTCGATCA TTTNTGCTTCAAACAGCGTTGGAAAGAAAAGGCTAATTCTCGATTTACGT TATGTCAACGCTCACCTTTTTAAAGAGAGGATTTCGTTCGATGAATGGGG ATCACTCAAAAATCTTATTTCCGAAAATGGATTTGCTTATAAATTTGACT TGAGGAAGGGTTATTATCATGTCGAAATAGCTGAGGCTCACCAAACCTAT CTCGGATTCTCTTGGAATCTTGATggcagagaaaaatttttcatattttg tgtCCTACCTTTTGGATTGTCTTCTGCCCCAATGATTTTCACAAAATTGC TGAGACCCTTGGTCTCCTACTGGCACGACCATGGCATTAAGATATGCGTT TTTCTCGACGATGGGGGCGGGACAGAGTCTAATTCAGTAAAAGCCATTTG GAGCTCCAAAATTTGTCAGGCGGTCACTTAAATCGTCTGGTTTTGTAGTA AACGAAGAAAAATCTGTTTGGCACCCCCAGAAACGACTGACATGGCTGGG AGTAATTATCGACTTCTCAGAGAACGCCTACTTTATCACAGAAAAAAGGA TCGAAGCCTTAATTGATTTGATAATCGAGACCCTAACCCTGAAACGAGTT ACATCtagaattttgtcaaaagtAGCAGGCTCTATAATTTCTATGAAATT TGTATTAGGCGATATTACTCAATTAAAATCTCGTTACTTGTACGAAGCAA TCGATAGTGAGGTGGCTTGGGACGCTCCCATTTCACTAAAGAAATTCCCA CAGGCAATTAGAGAGCTTGAATTTTGGTTGGGAAATTTACGTCGGCTTAA TCACAGATTTATTTCGGAGCACAGGGCCACCTTTGTAAACGTTTATTCTG ACGCAAGTGATTTTGGTATCGGGAGTCATATCCCAGCCCTAGGGGCGGAA AGCCATAGAAATCTTGACCCAAAAGAGCAAGGTCTTAGCTCAACATGGAG AGAACTTTCGGCTATTTTATACAGTCTTCGATCATTTAAGCAGCTTCTAA CGAGACAATCCATTAACTGGTTCACAGACAATTTTGCCGCTTCACTCATC GTCTCAAAAGGTAGTCGTAAAAAACATCTGCAAGACCTTGCCCTtgacat attcaatttttgtgCAGCTAGTTTAATTACCCTGAAAATAAACTGGATCC CAAGGGAGGAGAACGAGACAGCAGACGAAATTTCTAAGTATATTGACTTT GACGACTGGCAAATTACAGACGAATTCTTTACCTTTTTGAACAAACGTTG GGGTCCTTTCTCAGTAGATCGCTTTGCACGCCCAGAAAACACAAAATTGC CGAGGTtcaattcgaaattttttgtcccAGGCTCCGAAGCAGTGGACGCG TTTTCAGAAAACTGGTCCAACGAGATAAATTACGTAGTTCCACCGGTCGA TCTTATCCCAGAAGCCCTAAAGTTTATCTTACATAGTCAATGCAAAGGTA CCCTCGTGATCCCCTTGTGGAAATCTGCCCCATTTTGGTCTATGATCCGA GACGAATTCTACAGTAGAATGTTAGTAGAATCTATAATCATCACAAAAGG GAGAGAGATCCTTGAGAAGCCAACTAACGAACTTATAATGCTATCCCCAG ACAAATACAGGGGCTCAATGATTGCGTTCAAATTCGATTCCAAAAACATT ATCAGATAATGTATTTTCGTTATCGTCTGAAAGATCACACAAACTTTGCT AAATCTTACCTCTTCTGCTGGGTCCCTCACCCACGGAGAAGAAAGGGCTG AAACACGTACAAATCTTCCGCTGGGTTCCTGACCCATGGGGAAGCTTCTG CTGAGTCCTTGACTCATGGGGAAGAATTGCGTCCCGGACCAAATACATGT GCCCGGCACACAACGACTCTTAAATCTTCTGCTGGGTCCCTGACCCACGG GGAAGTACTCGAAAATCTTCTGCTGGGTCCCTGACCCACGGGGAAGTACG TATATGGAAGAAGAAATCGGGCTATATAATTTTTCTCTACAGCGAAATTG CTCTCCCATTTCTTACATCTAGAATCGTCCTTTCTGGCGTTTTTTCTCCT CTACATTTAGATTATCTCGTTGCGTCAATTGCCGAATCAGTTAAACATCC ACATTTGAAACGTCTCGCTAATCAAGTCCCTGGTATCATTTTGAAAAGCC GTGCCGAAAACACCGTCAAGAAATATAGATCATACTTCAACAGATGGGAA GTTTGGTGCAATTCCTACAACATTACCGCAATTCCAGCCAAAGAGAAACA CGTAGCTCTGTACCTGGTCAATCTCCTGCAAAATAAGAAGTCATCCCACG TCATCGAATCAACATTTTATGCCATCGAATACTACCACAAGTTGAACCTC TGCAACAGCCCCTTCATCTCACACCTATGTCTGCTTATCCTCGAAGCATC AAAACGCCAGAAAACAAAACAGAACAAGAAAGAACCAATCACAGCAAGTC ACCTCAGAAAAATTTACATCAACATTGGTAAGAGTAAAAACTGTACAACT TTAGATTTAAGAACTTTCACTATGATGGTTCTGAGCTATGCAGGCTTCTT AAGGTACTCCGAAGTTTCCGATATGAGAGGCAGTGATATAAAGTGGGAAC GCACTCAAATCGAAATCTTCATTGAAAAGAGCAAAACAGATATCTACAGA GACGGGCACTGGCTACTAATATCAAAACTTGACTCCCCCATCTGCCCACT AAGAATCCTAAGACGTTACCTCTTGAAAACTAATACTCGCaaaaattcga acaaatttcTGTTTCGTGGCATGAACTACTTCAAAAAGTCTAAAATCCAC AAGCTACGAACAAAGAACAAGCCGTTGTCTTACTCTGCAGCAAGATCAAA CATGCTCGACATGGTTACGCGAATtggtttgaaaaagaaaaactttggcT TGCACAGCTTACGCTCTGGTGGAGCCACTGCAGCTGCGAACGAAGGAGTC CCGGATAGACTATTTAAACGTCACGGCAGATGGAAAAGTGAAAGGGCCAA AGACGGCTATGTGAAAGATAAACTTTCCGATCTGTTATCAGTTTCAATGA ACCTAGGCTTATAGTTTTCAGCTTGTATTTGATTTTCCCAGACCACTCTG TGACTGTCACAGTGTTCATTCTCAGCTTATCACTAGATCTATTGTTATAC TTATCTATTTGTAAAAAGTTTCTAaggcttttttataaaatatacgattg gtgttgaaataaatatgttattttcgtttgaggtacgaattagaaaataa Run BLAST on NCBI transcript from alignment at sc0000639:38308..43807+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027671 ID=TCONS_00027671|Name=TCONS_00027671|organism=Clytia hemisphaerica|type=transcript|length=5500bp|location=Sequence derived from alignment at sc0000639:38308..43807+ (Clytia hemisphaerica) TTCTACGTTTTCGACCTCCAATTATCCTTTAACTACTTGTCTCTAAGGAG
CAGCTTTTGTGAACGTTTTAAAACCTGACTAATTCCTTGGGgaattcaaa
atctttttaaaaaacagAGAATTTTTTAGAAACTTCACATTAGCTACTGA
ACCGTTTATGTGTAAGTATGCCTCGAAGGAGAATTTTATCGACTTCAGAA
GAAGACAATGGTGATGGTGATACGTTCGACAAACTGAAAGAGTACTTGGA
TCAACAATTCTTAGATTTCAAGGACGACACCACCGACAAAagaaaagaca
agaaagaaaaagagttCAACAAACAATCGTGTAAGATTCAATATCAGTTT
AATGATGATCAGCTTCGCCTAGTCGAGAAAGCATTAAGTCACCTTAAGCA
CAAGAACATTAAGAAGGCAAAAAGTAAACTAAAAGATCTATCAAAAAACC
TCAAGAAAAGAAACAAACTTATTAAAATTGCTGATAAATCCCCCGGTGGA
TGGAGTACTGTTAAAGAGTACGAAACCGATAGCGTTGCATCCGACACCGC
CGACGAGAAGCGTCTGAAGAGAGCTGAAAAACGCGCACTGGAAAGAATCC
AATCCGAACCTAAACCTTCGAAGAGATTCAAGCAATCCTCAACTTTGTCC
CGGAACCCCGAGTCGTCTTCTGGGAGCCGTTACACGACAAAATACAGCAA
TTCCAGATCGAATGAACGTTGCCTTGCATGTAACAGATATGGCCACTGGC
GACACGAGTGCCCTGAAAGAAAATCCAGAAACTAAAGATAAGTGCAATGC
TAATTTTCTTGTTAATTCTGAAACAAACTCTGTAAAGGGAAAACTTAAGC
CTAAACTGGATTTCTGTTCAAATACTTTGAAGGCACCGAAGTACATTCTA
GACATCATCAAATACGGATATTTTTTGCCATTTGTCGACATTCCTGAACG
AAGCAtttcaaacaacaacaaatccgcactcgaaaacaaagaatttGTTT
CAGAATCGATAAGGGATTTACTTCAAGACGGCTCGGCCAGGGAGGTAGAG
TTTGCACCAAAGGTTATTAGTCCCCTTTCAGTTGCTTCAAACAGCGTTGG
AAAGAAAAGGCTAATTCTCGATTTACGTTATGTCAACGCTCACCTATTTA
AAGAGAGGATTTCGTTCGATGACTGGGGGTCACTCAAAAATCTTATTTCC
GAAAATGGATTTGCTTATAAATTTGACTTGAGGAAGGGTTATTATCATGT
CGAAATAGCTGAGGCTCACCAAACCTATCTCGGATTCTCTTGGAATCTTG
ATGGCagagaaaagtttttcatattttgtgtCCTACCTTTTGGATTGTCT
TCTGCCCCAATGATTTTCACAAAATTGCTGAGACCCTTGGTCTCCTACTG
GCACGACCATGGCATTAAGATATGCGTTTTTCTCGACGATGGGGGCGGGA
CAGAGTCTAATTTAGTCAAAGCTATTTCGAGCTCCAACTTTGTCAGGCGG
TCACTTAAATCGTCTGGTTTTGTAGTAAACGAAGAAAAATCTGTTTGGCA
CCCCCAGAAACGACTGACATGGCTGGGAGTAANAACCTAAACCTTCGAAG
AGATTCAAGCAATCCTCAACTTTGTCCCGGAACCCCGAGTCGTCTTCTGG
GAGCCGTTACACGACAAAATACAGCAAATCCAGATCGAATGAACGTTGCC
TTGCATGTAACAGATATGGCCACTGGCGACACGAGTGCCCTGAAAGAAAA
TCCAGAAGAAACTCCAGAAACTAAAGATAAGTGTAATTCCAATTTTCTTG
TTAATTCTGAAACAAACTCTGTAAAAGGAAAACTTAAGCCTAAACTGGAT
TTCTGGTCAAAGACTTTGAAGGCACCGAAGTANGAAAATAGCAGGCTCTA
TAATTTCTATGAAATTTGTATTAGGCGATATTACTCAATTAAAATCTCGT
TATTTGTACGAAGCAATCGATAGCGAGGTGGCTTGGGACGCTCCCATTTC
ACTAAAGAAATTCCCACAGGCAACTAGAGAGCTTGAATTTTGGTTGGGAA
ATTTACGTCGGCTTAATCACAGATTTATTTCGGAACACAGGGCCACCTTT
GTAAACGTATATTCTGACGCAAGTCATTCTGGTATCGGAAGTCATATCCC
AGCCCTAGGGGCGGAAAGCCATAGAAATCTTGACCCAAAAGAGCAAGGTC
TTAGCTCAACATGGAGAGAACTTTCGGCTATTTTATACAGTCTTCGATCA
TTTNTGCTTCAAACAGCGTTGGAAAGAAAAGGCTAATTCTCGATTTACGT
TATGTCAACGCTCACCTTTTTAAAGAGAGGATTTCGTTCGATGAATGGGG
ATCACTCAAAAATCTTATTTCCGAAAATGGATTTGCTTATAAATTTGACT
TGAGGAAGGGTTATTATCATGTCGAAATAGCTGAGGCTCACCAAACCTAT
CTCGGATTCTCTTGGAATCTTGATggcagagaaaaatttttcatattttg
tgtCCTACCTTTTGGATTGTCTTCTGCCCCAATGATTTTCACAAAATTGC
TGAGACCCTTGGTCTCCTACTGGCACGACCATGGCATTAAGATATGCGTT
TTTCTCGACGATGGGGGCGGGACAGAGTCTAATTCAGTAAAAGCCATTTG
GAGCTCCAAAATTTGTCAGGCGGTCACTTAAATCGTCTGGTTTTGTAGTA
AACGAAGAAAAATCTGTTTGGCACCCCCAGAAACGACTGACATGGCTGGG
AGTAATTATCGACTTCTCAGAGAACGCCTACTTTATCACAGAAAAAAGGA
TCGAAGCCTTAATTGATTTGATAATCGAGACCCTAACCCTGAAACGAGTT
ACATCtagaattttgtcaaaagtAGCAGGCTCTATAATTTCTATGAAATT
TGTATTAGGCGATATTACTCAATTAAAATCTCGTTACTTGTACGAAGCAA
TCGATAGTGAGGTGGCTTGGGACGCTCCCATTTCACTAAAGAAATTCCCA
CAGGCAATTAGAGAGCTTGAATTTTGGTTGGGAAATTTACGTCGGCTTAA
TCACAGATTTATTTCGGAGCACAGGGCCACCTTTGTAAACGTTTATTCTG
ACGCAAGTGATTTTGGTATCGGGAGTCATATCCCAGCCCTAGGGGCGGAA
AGCCATAGAAATCTTGACCCAAAAGAGCAAGGTCTTAGCTCAACATGGAG
AGAACTTTCGGCTATTTTATACAGTCTTCGATCATTTAAGCAGCTTCTAA
CGAGACAATCCATTAACTGGTTCACAGACAATTTTGCCGCTTCACTCATC
GTCTCAAAAGGTAGTCGTAAAAAACATCTGCAAGACCTTGCCCTtgacat
attcaatttttgtgCAGCTAGTTTAATTACCCTGAAAATAAACTGGATCC
CAAGGGAGGAGAACGAGACAGCAGACGAAATTTCTAAGTATATTGACTTT
GACGACTGGCAAATTACAGACGAATTCTTTACCTTTTTGAACAAACGTTG
GGGTCCTTTCTCAGTAGATCGCTTTGCACGCCCAGAAAACACAAAATTGC
CGAGGTtcaattcgaaattttttgtcccAGGCTCCGAAGCAGTGGACGCG
TTTTCAGAAAACTGGTCCAACGAGATAAATTACGTAGTTCCACCGGTCGA
TCTTATCCCAGAAGCCCTAAAGTTTATCTTACATAGTCAATGCAAAGGTA
CCCTCGTGATCCCCTTGTGGAAATCTGCCCCATTTTGGTCTATGATCCGA
GACGAATTCTACAGTAGAATGTTAGTAGAATCTATAATCATCACAAAAGG
GAGAGAGATCCTTGAGAAGCCAACTAACGAACTTATAATGCTATCCCCAG
ACAAATACAGGGGCTCAATGATTGCGTTCAAATTCGATTCCAAAAACATT
ATCAGATAATGTATTTTCGTTATCGTCTGAAAGATCACACAAACTTTGCT
AAATCTTACCTCTTCTGCTGGGTCCCTCACCCACGGAGAAGAAAGGGCTG
AAACACGTACAAATCTTCCGCTGGGTTCCTGACCCATGGGGAAGCTTCTG
CTGAGTCCTTGACTCATGGGGAAGAATTGCGTCCCGGACCAAATACATGT
GCCCGGCACACAACGACTCTTAAATCTTCTGCTGGGTCCCTGACCCACGG
GGAAGTACTCGAAAATCTTCTGCTGGGTCCCTGACCCACGGGGAAGTACG
TATATGGAAGAAGAAATCGGGCTATATAATTTTTCTCTACAGCGAAATTG
CTCTCCCATTTCTTACATCTAGAATCGTCCTTTCTGGCGTTTTTTCTCCT
CTACATTTAGATTATCTCGTTGCGTCAATTGCCGAATCAGTTAAACATCC
ACATTTGAAACGTCTCGCTAATCAAGTCCCTGGTATCATTTTGAAAAGCC
GTGCCGAAAACACCGTCAAGAAATATAGATCATACTTCAACAGATGGGAA
GTTTGGTGCAATTCCTACAACATTACCGCAATTCCAGCCAAAGAGAAACA
CGTAGCTCTGTACCTGGTCAATCTCCTGCAAAATAAGAAGTCATCCCACG
TCATCGAATCAACATTTTATGCCATCGAATACTACCACAAGTTGAACCTC
TGCAACAGCCCCTTCATCTCACACCTATGTCTGCTTATCCTCGAAGCATC
AAAACGCCAGAAAACAAAACAGAACAAGAAAGAACCAATCACAGCAAGTC
ACCTCAGAAAAATTTACATCAACATTGGTAAGAGTAAAAACTGTACAACT
TTAGATTTAAGAACTTTCACTATGATGGTTCTGAGCTATGCAGGCTTCTT
AAGGTACTCCGAAGTTTCCGATATGAGAGGCAGTGATATAAAGTGGGAAC
GCACTCAAATCGAAATCTTCATTGAAAAGAGCAAAACAGATATCTACAGA
GACGGGCACTGGCTACTAATATCAAAACTTGACTCCCCCATCTGCCCACT
AAGAATCCTAAGACGTTACCTCTTGAAAACTAATACTCGCaaaaattcga
acaaatttcTGTTTCGTGGCATGAACTACTTCAAAAAGTCTAAAATCCAC
AAGCTACGAACAAAGAACAAGCCGTTGTCTTACTCTGCAGCAAGATCAAA
CATGCTCGACATGGTTACGCGAATtggtttgaaaaagaaaaactttggcT
TGCACAGCTTACGCTCTGGTGGAGCCACTGCAGCTGCGAACGAAGGAGTC
CCGGATAGACTATTTAAACGTCACGGCAGATGGAAAAGTGAAAGGGCCAA
AGACGGCTATGTGAAAGATAAACTTTCCGATCTGTTATCAGTTTCAATGA
ACCTAGGCTTATAGTTTTCAGCTTGTATTTGATTTTCCCAGACCACTCTG
TGACTGTCACAGTGTTCATTCTCAGCTTATCACTAGATCTATTGTTATAC
TTATCTATTTGTAAAAAGTTTCTAaggcttttttataaaatatacgattg
gtgttgaaataaatatgttattttcgtttgaggtacgaattagaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00027671-exon-sc0000639-1491911889:38308..43807 | TCONS_00027671-exon-sc0000639-1491911889:38308..43807 | Clytia hemisphaerica | exon |
TCONS_00027671-exon-sc0000639-1510915933:38308..43807 | TCONS_00027671-exon-sc0000639-1510915933:38308..43807 | Clytia hemisphaerica | exon |
TCONS_00027671-exon-sc0000639-1575043694:38308..43807 | TCONS_00027671-exon-sc0000639-1575043694:38308..43807 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000639 | supercontig | sc0000639:38308..43807 + |
Blast
The following BLAST results are available for this feature:
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