TCONS_00027685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027685
Unique NameTCONS_00027685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1087

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027685 ID=TCONS_00027685|Name=TCONS_00027685|organism=Clytia hemisphaerica|type=transcript|length=1087bp
CAAACATGACCAATGCCACACTTAATAATTCGATGTTCAACAACAACTCA
ACAATTTTAATCAGCACCCGTACCAGTAATACGGAATTATTTTGTCAGGT
TCATTTACAAAGATTTCTGGCCATCAAACACGACCATCAAGTCTTCTTGG
TGATCTATTTGACATTATTGGCAATATGTGGTTGTTTAGTCAACTCGTTA
GTCGTTTATCTTTTGTTCATCACAAATCAATTGGCAAACCAATCTTTCAG
gCTTATCTTTTACGCATCCATCAACGATATTTTGGTAAATCTTGTAACTC
TCTATCGAGTCCCAGTACACATTATACCAAATTCAATGAAATGTCCTTAC
ATGATTGCAGAGCGTTTTTTATCTCCCTTCACGCGATTCTCAGCGATAAC
CCTAATGTGTTTGATAGGAATCGATCGTTATCTTCGAGTTAAATTTTTAC
AAGATTACCAATCCAAATTCACAAAATTACGGTTTaacattttgttgttt
atttgCTTCCTGGTTGTTATTTACCAGAGTCTCGTTCAATTGATTATGAT
TCCATTCTTAAATGACCATAACACATCACAATATACAAATCCAATAAATC
TACTTACCCTTATCATCTTTATTGCATCTTATCTCAATTCATTTAAAATC
TTGAGAAGACATCAACGATCCACAAATGCCAACCTGCAAAGATCCAACAG
AGACATTATGAGAATTACAAAATTCTACTTCTTATTGTATTTCATATCCT
ATGGTATCTTATTCATCCAATATGCAGCATTAAGGATCTTTCCGGAATCA
ATGCAAAGGTTCATCAAGGAGAATTTCATAATTTATGTTGAAGTGAGTGC
TTCATCTTACGTCATAAATGGAATAATTAATGGAATTGTAGTGTTAAGAA
TCAACCGAGCcatcaaaagaaagattaaaGAGCTACAACGGAAACTTCGA
GGTCGgttatttgaaaatcaaatagtGGCTGTACAGGAAGGCCCGGCTGT
CTCCCAAGGCAAATCCTCATCTAGCAGCGAATCCAATGGTCAATCTACAA
ACGAAAGTAAGGTGTGATTTGGAAATTATTGTAAGCA
Run BLAST on NCBI

protein sequence of TCONS_00027685-protein

>TCONS_00027685-protein ID=TCONS_00027685-protein|Name=TCONS_00027685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
NMTNATLNNSMFNNNSTILISTRTSNTELFCQVHLQRFLAIKHDHQVFLV
IYLTLLAICGCLVNSLVVYLLFITNQLANQSFRLIFYASINDILVNLVTL
YRVPVHIIPNSMKCPYMIAERFLSPFTRFSAITLMCLIGIDRYLRVKFLQ
DYQSKFTKLRFNILLFICFLVVIYQSLVQLIMIPFLNDHNTSQYTNPINL
LTLIIFIASYLNSFKILRRHQRSTNANLQRSNRDIMRITKFYFLLYFISY
GILFIQYAALRIFPESMQRFIKENFIIYVEVSASSYVINGIINGIVVLRI
NRAIKRKIKELQRKLRGRLFENQIVAVQEGPAVSQGKSSSSSESNGQSTN
ESKV
Run BLAST on NCBI

transcript from alignment at sc0000639:56734..58332-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027685 ID=TCONS_00027685|Name=TCONS_00027685|organism=Clytia hemisphaerica|type=transcript|length=1599bp|location=Sequence derived from alignment at sc0000639:56734..58332- (Clytia hemisphaerica)
CAAACATGACCAATGCCACACTTAATAATTCGATGTTCAACAACAACTCA
ACAATTTTAATCAGCACCCGTACCAGTAATACGGAATTATTTTGTCAGGT
TCATTTACAAAGATTTCTGGCCATCAAACACGACCATCAAGTCTTCTTGG
TGATCTATTTGACATTATTGGCAATATGTGGTTGTTTAGTCAACTCGTTA
GTCGTTTATCTTTTGTTCATCACAAATCAATTGGCAAACCAATCTTTCAG
GTATGATGTAAACAACACCCCTGTCTCATTGACCCTGTGAGAAATGATTA
AACTTTGTCCCAAAAATCGCAAAAATCAAATCATTCCGGTTAGAAAAGTT
CCCTAAACCAAACTCTGGTGAGACCTTCTTAGAAACCCGGGGGGGGGGAA
TTCGATTCAAAAACGTTGAAACTCACGCGGCACAAAATTAGGTCTTGAAA
TTGGACTCACGTTGCATTTTCTTGAAAAAATTTGACCTTTTTAGGCCAAA
TTTTTCACCCTTAAAGAGCATTTTTTCATCTTGCTCATTATTTCGACCCT
TACAGCAGTACACTTTGGGAAGCTTGAAAAAAGGACCCTTAAGGACAGTA
GATAGTACGTACGGAAGGTCGTTTACGTTGAATTTTGGAATATCAGCTGT
ACAATATAGCTAGTCAGAGGGACAGTCAGGGGGTTTGGCTGGGGTTTGAC
TGCAAGTTTTTAAATGTGTAGTGAAGGTTGAATTTCAAGGTAAATTTATG
TTTCATTTTTAGGCTTATCTTTTACGCATCCATCAACGATATTTTGGTAA
ATCTTGTAACTCTCTATCGAGTCCCAGTACACATTATACCAAATTCAATG
AAATGTCCTTACATGATTGCAGAGCGTTTTTTATCTCCCTTCACGCGATT
CTCAGCGATAACCCTAATGTGTTTGATAGGAATCGATCGTTATCTTCGAG
TTAAATTTTTACAAGATTACCAATCCAAATTCACAAAATTACGGTTTAAC
ATTTTGTTGTTTATTTGCTTCCTGGTTGTTATTTACCAGAGTCTCGTTCA
ATTGATTATGATTCCATTCTTAAATGACCATAACACATCACAATATACAA
ATCCAATAAATCTACTTACCCTTATCATCTTTATTGCATCTTATCTCAAT
TCATTTAAAATCTTGAGAAGACATCAACGATCCACAAATGCCAACCTGCA
AAGATCCAACAGAGACATTATGAGAATTACAAAATTCTACTTCTTATTGT
ATTTCATATCCTATGGTATCTTATTCATCCAATATGCAGCATTAAGGATC
TTTCCGGAATCAATGCAAAGGTTCATCAAGGAGAATTTCATAATTTATGT
TGAAGTGAGTGCTTCATCTTACGTCATAAATGGAATAATTAATGGAATTG
TAGTGTTAAGAATCAACCGAGCCATCAAAAGAAAGATTAAAGAGCTACAA
CGGAAACTTCGAGGTCGGTTATTTGAAAATCAAATAGTGGCTGTACAGGA
AGGCCCGGCTGTCTCCCAAGGCAAATCCTCATCTAGCAGCGAATCCAATG
GTCAATCTACAAACGAAAGTAAGGTGTGATTTGGAAATTATTGTAAGCA

Coding sequence (CDS) from alignment at sc0000639:56734..58332-

>TCONS_00027685 ID=TCONS_00027685|Name=TCONS_00027685|organism=Clytia hemisphaerica|type=CDS|length=2130bp|location=Sequence derived from alignment at sc0000639:56734..58332- (Clytia hemisphaerica)
GCTTATCTTTTACGCATCCATCAACGATATTTTGGTAAATCTTGTAACTC
TCTATCGAGTCCCAGTACACATTATACCAAATTCAATGAAATGTCCTTAC
ATGATTGCAGAGCGTTTTTTATCTCCCTTCACGCGATTCTCAGCGATAAC
CCTAATGTGTTTGATAGGAATCGATCGTTATCTTCGAGTTAAATTTTTAC
AAGATTACCAATCCAAATTCACAAAATTACGGTTTAACATTTTGTTGTTT
ATTTGCTTCCTGGTTGTTATTTACCAGAGTCTCGTTCAATTGATTATGAT
TCCATTCTTAAATGACCATAACACATCACAATATACAAATCCAATAAATC
TACTTACCCTTATCATCTTTATTGCATCTTATCTCAATTCATTTAAAATC
TTGAGAAGACATCAACGATCCACAAATGCCAACCTGCAAAGATCCAACAG
AGACATTATGAGAATTACAAAATTCTACTTCTTATTGTATTTCATATCCT
ATGGTATCTTATTCATCCAATATGCAGCATTAAGGATCTTTCCGGAATCA
ATGCAAAGGTTCATCAAGGAGAATTTCATAATTTATGTTGAAGTGAGTGC
TTCATCTTACGTCATAAATGGAATAATTAATGGAATTGTAGTGTTAAGAA
TCAACCGAGCCATCAAAAGAAAGATTAAAGAGCTACAACGGAAACTTCGA
GGTCGGTTATTTGAAAATCAAATAGTGGCTGTACAGGAAGGCCCGGCTGT
CTCCCAAGGCAAATCCTCATCTAGCAGCGAATCCAATGGTCAATCTACAA
ACGAAAGTAAGGTGTGAAACATGACCAATGCCACACTTAATAATTCGATG
TTCAACAACAACTCAACAATTTTAATCAGCACCCGTACCAGTAATACGGA
ATTATTTTGTCAGGTTCATTTACAAAGATTTCTGGCCATCAAACACGACC
ATCAAGTCTTCTTGGTGATCTATTTGACATTATTGGCAATATGTGGTTGT
TTAGTCAACTCGTTAGTCGTTTATCTTTTGTTCATCACAAATCAATTGGC
AAACCAATCTTTCAGGCTTATCTTTTACGCATCCATCAACGATATTTTGG
TAAATCTTGTAACTCTCTATCGAGTCCCAGTACACATTATACCAAATTCA
ATGAAATGTCCTTACATGATTGCAGAGCGTTTTTTATCTCCCTTCACGCG
ATTCTCAGCGATAACCCTAATGTGTTTGATAGGAATCGATCGTTATCTTC
GAGTTAAATTTTTACAAGATTACCAATCCAAATTCACAAAATTACGGTTT
AACATTTTGTTGTTTATTTGCTTCCTGGTTGTTATTTACCAGAGTCTCGT
TCAATTGATTATGATTCCATTCTTAAATGACCATAACACATCACAATATA
CAAATCCAATAAATCTACTTACCCTTATCATCTTTATTGCATCTTATCTC
AATTCATTTAAAATCTTGAGAAGACATCAACGATCCACAAATGCCAACCT
GCAAAGATCCAACAGAGACATTATGAGAATTACAAAATTCTACTTCTTAT
TGTATTTCATATCCTATGGTATCTTATTCATCCAATATGCAGCATTAAGG
ATCTTTCCGGAATCAATGCAAAGGTTCATCAAGGAGAATTTCATAATTTA
TGTTGAAGTGAGTGCTTCATCTTACGTCATAAATGGAATAATTAATGGAA
TTGTAGTGTTAAGAATCAACCGAGCCATCAAAAGAAAGATTAAAGAGCTA
CAACGGAAACTTCGAGGTCGGTTATTTGAAAATCAAATAGTGGCTGTACA
GGAAGGCCCGGCTGTCTCCCAAGGCAAATCCTCATCTAGCAGCGAATCCA
ATGGTCAATCTACAAACGAAAGTAAGGTGTGAAACATGACCAATGCCACA
CTTAATAATTCGATGTTCAACAACAACTCAACAATTTTAATCAGCACCCG
TACCAGTAATACGGAATTATTTTGTCAGGTTCATTTACAAAGATTTCTGG
CCATCAAACACGACCATCAAGTCTTCTTGGTGATCTATTTGACATTATTG
GCAATATGTGGTTGTTTAGTCAACTCGTTAGTCGTTTATCTTTTGTTCAT
CACAAATCAATTGGCAAACCAATCTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015622XLOC_015622Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027685-proteinTCONS_00027685-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027685-exon-sc0000639-1575043694:58083..58332TCONS_00027685-exon-sc0000639-1575043694:58083..58332Clytia hemisphaericaexon
TCONS_00027685-exon-sc0000639-1575043694:56734..57570TCONS_00027685-exon-sc0000639-1575043694:56734..57570Clytia hemisphaericaexon
TCONS_00027685-exon-sc0000639-1510915933:58083..58332TCONS_00027685-exon-sc0000639-1510915933:58083..58332Clytia hemisphaericaexon
TCONS_00027685-exon-sc0000639-1510915933:56734..57570TCONS_00027685-exon-sc0000639-1510915933:56734..57570Clytia hemisphaericaexon
TCONS_00027685-exon-sc0000639-1491911889:58083..58332TCONS_00027685-exon-sc0000639-1491911889:58083..58332Clytia hemisphaericaexon
TCONS_00027685-exon-sc0000639-1491911889:56734..57570TCONS_00027685-exon-sc0000639-1491911889:56734..57570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000639supercontigsc0000639:56734..58332 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.202037	0.581966	0.0457514	0.0447606	0.108983	0	2.79558	2.75185	1.27266	1.90987	0.257245	1.08355	0.0268737	0.0837259	0	0.0246232	0.0910012	0.0621822	0.085908	0	0.0781364	0.0571683	0.185322	0.18876	0.260302	0.542065	0.221627	0	0	0.0456942
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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