TCONS_00027688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027688
Unique NameTCONS_00027688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027688 ID=TCONS_00027688|Name=TCONS_00027688|organism=Clytia hemisphaerica|type=transcript|length=447bp
CTCATTGACAAAAAGAGAATTCTACGATGCAATCTACCTTCGGTATAACT
GGGAGATGAAAAATCTACCGAGCGACTGTGTATGCGGCTCCAAATTCAGC
GTCGATCATTCACTACAGTGCAAGGTTGGCGGTTTTATTCACATGCGGCA
CAATGAGTTGGTTAACATAACGGCTAATCTATTTGCAATTGTTTGCAAAG
ATGTTGAGAAGgaaccaattcttcaaaaacgTTTCGATCATGACTCTGAA
CTCCGTACTGATGTTACATTAAGAGGATTTTGGCAGAGGCAACAGAAGGC
ATTTCTTGACGTGAGGGATTTTTCCCCTTCAGCCAGAAGTTACCAAAACC
AAAATCTTGCTAGTGTAATGAAGCAAAtggagaaagagaagaaaagaaag
taCGTAAATCGCATACTCGATCAAGAAAACGGTACTTTTACACCACT
Run BLAST on NCBI

protein sequence of TCONS_00027688-protein

>TCONS_00027688-protein ID=TCONS_00027688-protein|Name=TCONS_00027688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
SLTKREFYDAIYLRYNWEMKNLPSDCVCGSKFSVDHSLQCKVGGFIHMRH
NELVNITANLFAIVCKDVEKEPILQKRFDHDSELRTDVTLRGFWQRQQKA
FLDVRDFSPSARSYQNQNLASVMKQMEKEKKRKYVNRILDQENGTFTP
Run BLAST on NCBI

transcript from alignment at sc0000639:16450..16896

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027688 ID=TCONS_00027688|Name=TCONS_00027688|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at sc0000639:16450..16896 (Clytia hemisphaerica)
AGTGGTGTAAAAGTACCGTTTTCTTGATCGAGTATGCGATTTACGtactt
tcttttcttctctttctccaTTTGCTTCATTACACTAGCAAGATTTTGGT
TTTGGTAACTTCTGGCTGAAGGGGAAAAATCCCTCACGTCAAGAAATGCC
TTCTGTTGCCTCTGCCAAAATCCTCTTAATGTAACATCAGTACGGAGTTC
AGAGTCATGATCGAAAcgtttttgaagaattggttcCTTCTCAACATCTT
TGCAAACAATTGCAAATAGATTAGCCGTTATGTTAACCAACTCATTGTGC
CGCATGTGAATAAAACCGCCAACCTTGCACTGTAGTGAATGATCGACGCT
GAATTTGGAGCCGCATACACAGTCGCTCGGTAGATTTTTCATCTCCCAGT
TATACCGAAGGTAGATTGCATCGTAGAATTCTCTTTTTGTCAATGAG

Coding sequence (CDS) from alignment at sc0000639:16450..16896

>TCONS_00027688 ID=TCONS_00027688|Name=TCONS_00027688|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000639:16450..16896 (Clytia hemisphaerica)
TGGTGTAAAAGTACCGTTTTCTTGATCGAGTATGCGATTTACGtactttc
ttttcttctctttctccaTTTGCTTCATTACACTAGCAAGATTTTGGTTT
TGGTAACTTCTGGCTGAAGGGGAAAAATCCCTCACGTCAAGAAATGCCTT
CTGTTGCCTCTGCCAAAATCCTCTTAATGTAACATCAGTACGGAGTTCAG
AGTCATGATCGAAAcgtttttgaagaattggttcCTTCTCAACATCTTTG
CAAACAATTGCAAATAGATTAGCCGTTATGTTAACCAACTCATTGTGCCG
CATGTGAATAAAACCGCCAACCTTGCACTGTAGTGAATGATCGACGCTGA
ATTTGGAGCCGCATACACAGTCGCTCGGTAGATTTTTCATCTCCCAGTTA
TACCGAAGGTAGATTGCATCGTAGAATTCTCTTTTTGTCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015625XLOC_015625Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027688-proteinTCONS_00027688-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027688-exon-sc0000639-1491911889:16450..16896TCONS_00027688-exon-sc0000639-1491911889:16450..16896Clytia hemisphaericaexon
TCONS_00027688-exon-sc0000639-1510915933:16450..16896TCONS_00027688-exon-sc0000639-1510915933:16450..16896Clytia hemisphaericaexon
TCONS_00027688-exon-sc0000639-1575043694:16450..16896TCONS_00027688-exon-sc0000639-1575043694:16450..16896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000639supercontigsc0000639:16450..16896 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.145363	0.200868	0	0	0	0	0.200266	0.125615	0.155595	0.151024	0.669046	0.216847	0.308871	0	0.502793	0	0.344092	0.746883	0	0	0.421797	0.341833	0	0.512345	0	0.408799	0.21814	0.330904	0.168569
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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