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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027718 ID=TCONS_00027718|Name=TCONS_00027718|organism=Clytia hemisphaerica|type=transcript|length=2379bp
AGGactacaaaagaaaaaaataacaaaataacaaaaactaagtgtatttt
ataaaataacaaaTATATAAGCTTATCTTCATTGAAATTAAATACTAATG
TTTATTATAACAAATGGCATTCGTTGTTTTTAATGATGAACTACAGTATT
CCATCAACctcctttttaatgaaattgaaaaccTCTGCTGAATAGAAAGC
AGATTTTCTCGTTAATTCAAATTTGTCTTGTTCAGTCGGACATTTCTGAT
CCAATAATTGAAGCTGCACTTTCTTTAGATCATGTTCTCCTTTGTTTCGT
ATGTTCACATAATCTCCAACATAAGAATAGTCGTTGGGATTAAGCTTTTT
GACGAAAAAATGGAACATTTGAGTGTATCTTGTACTAAAATCCTCCCACT
TGCAATCCTTCtcgaaaaatttcttcaaatctTCCTCCGTTTGAGAAACC
TTCTGGTTAGGATAATAAAGAAAATCCTTGCCTTCTGGATACAAGTTTTC
TTTGATGTATTTCATTGTACGTTCTAAAACAACTTTACTGTCATGGAAAA
TACTTACAGTTTTATCTGCTAGTTCAGTTGCTGTAAATTTCGattcaata
ataattttttcaaactggaTAAAGTTTTCCTTTAATTCCGTTGTGTTTTC
ATCCGAAAATGTTATTTCAATCTCAATTATTTGACTTTTAAGTTTGAATT
CCCTTCTCTTGTGATAATCAGCGATCTTTGGAATAAGCTGATCCAtttct
ttcttgattttctGAACATCCAGACCATTTCTACGCTTATTTTCAATGAT
CTTGAAGTACAAGGATAATTCATGCTCTGAAAGGTCATCTGTATTACTCG
AGATCTTAACTTTTTGTAAGTAAAATAGCGCACTTTCATAATGACCACTC
AGCTTGTAGATCCATGCTTTTGTTTTTAAGACTTTCACTTGGTCACCTTT
TTCTTTAGATGCCAACTGTAAAAGCTCTTCACGTGcatttttaacaaatt
tcaaCTCATAAAAGTTATCCTGGTCGGTACCTAAGCTAGCTTTCCGaaag
gttttttccaaatatttctCCACTTCTTCGGAATCAAATTCTCGGTAGTA
TTCAGAGAGTCGGTAACAAACTTCGATTTCACTCCTTAAATCGAATTGGT
TTTTGTCGAGACGCTCCTCGGCCTTCTTATACCAAAAGGTGCATTCCTTT
TTATGATGATCTGCTTTGTTTCGATAGAGGTTTTTCTCTGCTTGTTTTCC
GCCTTTTTTGGATGCTTCTTCGTTAAAGGTTTTGTAAGCTCTAAGGTGAA
TATTTGCTATTTTCGTAATATCGAATGGCTTTGCATTATCTGAATCTACG
TTTTCAGTAAAGTATTTGACAGCATTCTTTAGACTCGCTTCATCAAGTCG
TCTAGGAGCTCCCTTCTTCTTCCAACAACTGTTTACCCATTTTTGTTGAT
AGATATTTCCTAATCCACGTAGTGTTTTCATTGAACTTGGATTTATAATT
TTAGCTATATTATAAAGTTCTAATGCTTTATCATCTCTTCCTATGTCTGT
GTATAATCCAGATGCTTCTTCTAAGACAATTATATTTCTCTGTCTATCTT
TATCCAAAGGAACTTGCTCGAGGATAGCTAACACCTCCTCTGTCCCATGT
GGCTTTCTTTGTTTAAGCAAATGTCTTGCTAATTTCAATCCCACGAAATG
ATAAGTTGGGTCCAATTCAACTGCATGTCTTAGTAAAGTTTCTATTTCGT
CATTTTCCTGTTTCGTTCTTTCCATACCAGCTGACCCATGCAACTTAACA
AGAGCTAGACCGAAGACCCATTCGGCAGTTTCTTTCGattttaaagcctc
ttgatagAAGTTGATCGATTCGTTGTGCATCCGAAAATAGTTGGCTGAGA
ACCCCTGCATGGCTAAAACTTCAGGATTTTTTGGAATGTTCGTTATCTTT
TTAATCTTGTTGTATTCACATTGGATTTGTTCCATTTGGTACTTAGGGTC
TTCAGATTTATTTTTGCTCCATTTTTTAAGGTTAAAATAAATCAGATTTC
CATGCTATAGCTCGGTAACCACAGCTCTCTTTCTCACATGCATCGAGTGC
ATTTTGAAAAGCCTTTTCAGCTTTCTGTAGGTATTCAGCTCCATTGCTCT
CCTTCTTCAGATACAACTGCGTGTAAAGAAAGCCTTGCAGTGAATAAAGT
TGAGGGAAATTTCGTTTTGGGCTGTCTTCTGCTTGAGCGTTTAATTCTCC
TTCGATTGTTGAGATGCGATCTTGCAGCCAAAGTTCTGTTTTTTGCTCCT
TGTTCATGTTCATGAAATCCCAATTAAAACAACAGTGGATTGTTGAAAGG
ATATCAAATTGATTCGGTGAATAGCTGGC Run BLAST on NCBI transcript from alignment at sc0000642:26520..28981- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027718 ID=TCONS_00027718|Name=TCONS_00027718|organism=Clytia hemisphaerica|type=transcript|length=2462bp|location=Sequence derived from alignment at sc0000642:26520..28981- (Clytia hemisphaerica)
AGGACTACAAAAGAAAAAAATAACAAAATAACAAAAACTAAGTGTATTTT
ATAAAATAACAAATATATAAGCTTATCTTCATTGAAATTAAATACTAATG
TTTATTATAACAAATGGCATTCGTTGTTTTTAATGATGAACTACAGTATT
CCATCAACCTCCTTTTTAATGAAATTGAAAACCTCTGCTGAATAGAAAGC
AGATTTTCTCGTTAATTCAAATTTGTCTTGTTCAGTCGGACATTTCTGAT
CCAATAATTGAAGCTGCACTTTCTTTAGATCATGTTCTCCTTTGTTTCGT
ATGTTCACATAATCTCCAACATAAGAATAGTCGTTGGGATTAAGCTTTTT
GACGAAAAAATGGAACATTTGAGTGTATCTTGTACTAAAATCCTCCCACT
TGCAATCCTTCTCGAAAAATTTCTTCAAATCTTCCTCCGTTTGAGAAACC
TTCTGGTTAGGATAATAAAGAAAATCCTTGCCTTCTGGATACAAGTTTTC
TTTGATGTATTTCATTGTACGTTCTAAAACAACTTTACTGTCATGGAAAA
TACTTACAGTTTTATCTGCTAGTTCAGTTGCTGTAAATTTCGATTCAATA
ATAATTTTTTCAAACTGGATAAAGTTTTCCTTTAATTCCGTTGTGTTTTC
ATCCGAAAATGTTATTTCAATCTCAATTATTTGACTTTTAAGTTTGAATT
CCCTTCTCTTGTGATAATCAGCGATCTTTGGAATAAGCTGATCCATTTCT
TTCTTGATTTTCTGAACATCCAGACCATTTCTACGCTTATTTTCAATGAT
CTTGAAGTACAAGGATAATTCATGCTCTGAAAGGTCATCTGTATTACTCG
AGATCTTAACTTTTTGTAAGTAAAATAGCGCACTTTCATAATGACCACTC
AGCTTGTAGATCCATGCTTTTGTTTTTAAGACTTTCACTTGGTCACCTTT
TTCTTTAGATGCCAACTGTAAAAGCTCTTCACGTGCATTTTTAACAAATT
TCAACTCATAAAAGTTATCCTGGTCGGTACCTAAGCTAGCTTTCCGAAAG
GTTTTTTCCAAATATTTCTCCACTTCTTCGGAATCAAATTCTCGGTAGTA
TTCAGAGAGTCGGTAACAAACTTCGATTTCACTCCTTAAATCGAATTGGT
TTTTGTCGAGACGCTCCTCGGCCTTCTTATACCAAAAGGTGCATTCCTTT
TTATGATGATCTGCTTTGTTTCGATAGAGGTTTTTCTCTGCTTGTTTTCC
GCCTTTTTTGGATGCTTCTTCGTTAAAGGTTTTGTAAGCTCTAAGGTGAA
TATTTGCTATTTTCGTAATATCGAATGGCTTTGCATTATCTGAATCTACG
TTTTCAGTAAAGTATTTGACAGCATTCTTTAGACTCGCTTCATCAAGTCG
TCTAGGAGCTCCCTTCTTCTTCCAACAACTGTTTACCCATTTTTGTTGAT
AGATATTTCCTAATCCACGTAGTGTTTTCATTGAACTTGGATTTATAATT
TTAGCTATATTATAAAGTTCTAATGCTTTATCATCTCTTCCTATGTCTGT
GTATAATCCAGATGCTTCTTCTAAGACAATTATATTTCTCTGTCTATCTT
TATCCAAAGGAACTTGCTCGAGGATAGCTAACACCTCCTCTGTCCCATGT
GGCTTTCTTTGTTTAAGCAAATGTCTTGCTAATTTCAATCCCACGAAATG
ATAAGTTGGGTCCAATTCAACTGCATGTCTTAGTAAAGTTTCTATTTCGT
CATTTTCCTGTTTCGTTCTTTCCATACCAGCTGACCCATGCAACTTAACA
AGAGCTAGACCGAAGACCCATTCGGCAGTTTCTTTCGATTTTAAAGCCTC
TTGATAGAAGTTGATCGATTCGTTGTGCATCCGAAAATAGTTGGCTGAGA
ACCCCTGCATGGCTAAAACTTCAGGATTTTTTGGAATGTTCGTTATCTTT
TTAATCTTGTTGTATTCACATTGGATTTGTTCCATTTGGTACTTAGGGTC
TTCAGATTTATTTTTGCTCCATTTTTTAAGGTTAAAATAAATCAGATTTC
CATATGANTGTTGCGTTTGGTACTGAGGGTCTTCAGATTTATTTTTGCTC
CATTTTTTATGGTTGAAATAAATCAGATTCCCATACGCTATAGCTCGGTA
ACCACAGCTCTCTTTCTCACATGCATCGAGTGCATTTTGAAAAGCCTTTT
CAGCTTTCTGTAGGTATTCAGCTCCATTGCTCTCCTTCTTCAGATACAAC
TGCGTGTAAAGAAAGCCTTGCAGTGAATAAAGTTGAGGGAAATTTCGTTT
TGGGCTGTCTTCTGCTTGAGCGTTTAATTCTCCTTCGATTGTTGAGATGC
GATCTTGCAGCCAAAGTTCTGTTTTTTGCTCCTTGTTCATGTTCATGAAA
TCCCAATTAAAACAACAGTGGATTGTTGAAAGGATATCAAATTGATTCGG
TGAATAGCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027718-exon-sc0000642-1575043694:26929..28981 | TCONS_00027718-exon-sc0000642-1575043694:26929..28981 | Clytia hemisphaerica | exon |
| TCONS_00027718-exon-sc0000642-1575043694:26520..26845 | TCONS_00027718-exon-sc0000642-1575043694:26520..26845 | Clytia hemisphaerica | exon |
| TCONS_00027718-exon-sc0000642-1510915933:26929..28981 | TCONS_00027718-exon-sc0000642-1510915933:26929..28981 | Clytia hemisphaerica | exon |
| TCONS_00027718-exon-sc0000642-1510915933:26520..26845 | TCONS_00027718-exon-sc0000642-1510915933:26520..26845 | Clytia hemisphaerica | exon |
| TCONS_00027718-exon-sc0000642-1491911889:26929..28981 | TCONS_00027718-exon-sc0000642-1491911889:26929..28981 | Clytia hemisphaerica | exon |
| TCONS_00027718-exon-sc0000642-1491911889:26520..26845 | TCONS_00027718-exon-sc0000642-1491911889:26520..26845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000642 | supercontig | sc0000642:26520..28981 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011990 | TPR-like_helical_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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