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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027741 ID=TCONS_00027741|Name=TCONS_00027741|organism=Clytia hemisphaerica|type=transcript|length=1178bp
GTTTATTCATCTTTAACAGGCCTTAAGAAACtcaacaaaaaaatttgtat
tGACAGAGTTGGGAGGGAAAGGTTGAAAACACCACTCTCCGGACCTCTTA
AAGTACATATTTTTCCTACTCGGGTGATAGAGGCCACCAATGTTTTGCAT
GCAAATCACTTGATGGAATTAATTTTAGGAGAAAAGAAAATTCGCCTTAT
CGATAATGTGGTTTTAATAGCTGATGGAGGTCCAGATTGGTCTGTCAAAG
GTGTTATAAACTTTCTTTCGATGGGTTATCTCTGGAAGAATCTTAAACTA
GATTCTTTGGTAATTCAATGCTATGCACCAGGACATTCTCGGTTTAATCC
CATAGAGCGCAGTTGGTCATTTCTAACCAAAAAGATAATCGGAGTTGTGC
TGCCCGATGATATAGATGGTAAGGTACCTGATGTTAATGACAAAGCTGGT
TGGTTGAAAGTTTTAGATAACGCAACTGAACTTTGTTCAAAATTTTGGGA
TGGAAAGATTTATGATGGCTTTCGTATTAAAACGAAAAACTTCTTTAGCG
ATGATCCCTTGATCAACCCTATCAAGGAaacacacaaaattttcaaagaa
ttcacCAACACCAACAAAACGAAGCTTAAACAACGCGAAGATTTAAAAGC
CCTTCAAACTGTGTACTCTTTTCTTGTGAAACATTCAAATCGAAAAGCAT
ACCAACTTGAGTTTTTTCGTTGCCAGAATGACACGTGCGATCACTGTAAA
GAACTTCCATTAAGAGAAAACAAATTTCTAGACACTGTTAAACTGTTCGG
AGGTTCTTGCCCCGTTCCTCAAGAGAGCCAAGTTTACAAAAATCACTATA
AATCTTTATTGGAAATGTTGAGAAATCCTCACTCCAACAGAAAAAAGACA
ACCTCTCACGGAATGTGTAAAGAAGGATGCTCCTATTCTTTTTTCTCAGA
TGCAGATAGAAAAAGACATATGCTTCTGATGCATCATTAAATTTTTCACC
TTACTTGTTTTATATTTAGCTGTTTGATTATTTTGTTTGATTATGTTTGA
TGATTTTTTGAAAGGGATAACCAGAAAAAAAAGTTTGCCTTATTCGTTCT
GAATAACACCTCCAAAATTGTAAAATTGCTTTCTCAAATCGACgtgttta
atttgaaaatttggtagTTTCCCTCTAG Run BLAST on NCBI protein sequence of TCONS_00027741-protein >TCONS_00027741-protein ID=TCONS_00027741-protein|Name=TCONS_00027741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
VYSSLTGLKKLNKKICIDRVGRERLKTPLSGPLKVHIFPTRVIEATNVLH
ANHLMELILGEKKIRLIDNVVLIADGGPDWSVKGVINFLSMGYLWKNLKL
DSLVIQCYAPGHSRFNPIERSWSFLTKKIIGVVLPDDIDGKVPDVNDKAG
WLKVLDNATELCSKFWDGKIYDGFRIKTKNFFSDDPLINPIKETHKIFKE
FTNTNKTKLKQREDLKALQTVYSFLVKHSNRKAYQLEFFRCQNDTCDHCK
ELPLRENKFLDTVKLFGGSCPVPQESQVYKNHYKSLLEMLRNPHSNRKKT
TSHGMCKEGCSYSFFSDADRKRHMLLMHH Run BLAST on NCBI transcript from alignment at sc0000643:8074..9251 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027741 ID=TCONS_00027741|Name=TCONS_00027741|organism=Clytia hemisphaerica|type=transcript|length=1178bp|location=Sequence derived from alignment at sc0000643:8074..9251 (Clytia hemisphaerica)
CTAGAGGGAAActaccaaattttcaaattaaacacGTCGATTTGAGAAAG
CAATTTTACAATTTTGGAGGTGTTATTCAGAACGAATAAGGCAAACTTTT
TTTTCTGGTTATCCCTTTCAAAAAATCATCAAACATAATCAAACAAAATA
ATCAAACAGCTAAATATAAAACAAGTAAGGTGAAAAATTTAATGATGCAT
CAGAAGCATATGTCTTTTTCTATCTGCATCTGAGAAAAAAGAATAGGAGC
ATCCTTCTTTACACATTCCGTGAGAGGTTGTCTTTTTTCTGTTGGAGTGA
GGATTTCTCAACATTTCCAATAAAGATTTATAGTGATTTTTGTAAACTTG
GCTCTCTTGAGGAACGGGGCAAGAACCTCCGAACAGTTTAACAGTGTCTA
GAAATTTGTTTTCTCTTAATGGAAGTTCTTTACAGTGATCGCACGTGTCA
TTCTGGCAACGAAAAAACTCAAGTTGGTATGCTTTTCGATTTGAATGTTT
CACAAGAAAAGAGTACACAGTTTGAAGGGCTTTTAAATCTTCGCGTTGTT
TAAGCTTCGTTTTGTTGGTGTTGgtgaattctttgaaaattttgtgtgtt
TCCTTGATAGGGTTGATCAAGGGATCATCGCTAAAGAAGTTTTTCGTTTT
AATACGAAAGCCATCATAAATCTTTCCATCCCAAAATTTTGAACAAAGTT
CAGTTGCGTTATCTAAAACTTTCAACCAACCAGCTTTGTCATTAACATCA
GGTACCTTACCATCTATATCATCGGGCAGCACAACTCCGATTATCTTTTT
GGTTAGAAATGACCAACTGCGCTCTATGGGATTAAACCGAGAATGTCCTG
GTGCATAGCATTGAATTACCAAAGAATCTAGTTTAAGATTCTTCCAGAGA
TAACCCATCGAAAGAAAGTTTATAACACCTTTGACAGACCAATCTGGACC
TCCATCAGCTATTAAAACCACATTATCGATAAGGCGAATTTTCTTTTCTC
CTAAAATTAATTCCATCAAGTGATTTGCATGCAAAACATTGGTGGCCTCT
ATCACCCGAGTAGGAAAAATATGTACTTTAAGAGGTCCGGAGAGTGGTGT
TTTCAACCTTTCCCTCCCAACTCTGTCaatacaaatttttttgttgaGTT
TCTTAAGGCCTGTTAAAGATGAATAAAC Coding sequence (CDS) from alignment at sc0000643:8074..9251 >TCONS_00027741 ID=TCONS_00027741|Name=TCONS_00027741|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000643:8074..9251 (Clytia hemisphaerica)
TTAATGATGCATCAGAAGCATATGTCTTTTTCTATCTGCATCTGAGAAAA
AAGAATAGGAGCATCCTTCTTTACACATTCCGTGAGAGGTTGTCTTTTTT
CTGTTGGAGTGAGGATTTCTCAACATTTCCAATAAAGATTTATAGTGATT
TTTGTAAACTTGGCTCTCTTGAGGAACGGGGCAAGAACCTCCGAACAGTT
TAACAGTGTCTAGAAATTTGTTTTCTCTTAATGGAAGTTCTTTACAGTGA
TCGCACGTGTCATTCTGGCAACGAAAAAACTCAAGTTGGTATGCTTTTCG
ATTTGAATGTTTCACAAGAAAAGAGTACACAGTTTGAAGGGCTTTTAAAT
CTTCGCGTTGTTTAAGCTTCGTTTTGTTGGTGTTGgtgaattctttgaaa
attttgtgtgttTCCTTGATAGGGTTGATCAAGGGATCATCGCTAAAGAA
GTTTTTCGTTTTAATACGAAAGCCATCATAAATCTTTCCATCCCAAAATT
TTGAACAAAGTTCAGTTGCGTTATCTAAAACTTTCAACCAACCAGCTTTG
TCATTAACATCAGGTACCTTACCATCTATATCATCGGGCAGCACAACTCC
GATTATCTTTTTGGTTAGAAATGACCAACTGCGCTCTATGGGATTAAACC
GAGAATGTCCTGGTGCATAGCATTGAATTACCAAAGAATCTAGTTTAAGA
TTCTTCCAGAGATAACCCATCGAAAGAAAGTTTATAACACCTTTGACAGA
CCAATCTGGACCTCCATCAGCTATTAAAACCACATTATCGATAAGGCGAA
TTTTCTTTTCTCCTAAAATTAATTCCATCAAGTGATTTGCATGCAAAACA
TTGGTGGCCTCTATCACCCGAGTAGGAAAAATATGTACTTTAAGAGGTCC
GGAGAGTGGTGTTTTCAACCTTTCCCTCCCAACTCTGTCaatacaaattt
ttttgttgaGTTTCTTAAGGCCTGTTAAAGATGAATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027741-exon-sc0000643-1491911889:8074..9251 | TCONS_00027741-exon-sc0000643-1491911889:8074..9251 | Clytia hemisphaerica | exon |
| TCONS_00027741-exon-sc0000643-1510915933:8074..9251 | TCONS_00027741-exon-sc0000643-1510915933:8074..9251 | Clytia hemisphaerica | exon |
| TCONS_00027741-exon-sc0000643-1575043694:8074..9251 | TCONS_00027741-exon-sc0000643-1575043694:8074..9251 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000643 | supercontig | sc0000643:8074..9251 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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