TCONS_00027753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027753
Unique NameTCONS_00027753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027753 ID=TCONS_00027753|Name=TCONS_00027753|organism=Clytia hemisphaerica|type=transcript|length=308bp
GAAGATTTCGGGAAATGGTTAATATGAATGgTAATACATTACCTACAACA
ACAACAGTTACCACTACTTACAGACCAAGAATATGTCTAACCAATTCTGG
CTCATCAACCTGCACTCCATTGGGCCTACCACCAATGGTGGCAAGAACTT
TAGCTCATCCACTGGCCAGACCACCACCTCATCAAGTTGGCTTACCCTCC
AACACAACACAAACACAGAGAGAACAAACTCGACAAGTTGGCTTGCCCTC
CATTAGTACATCTACACCACAAACACAGAGAGAACAAACTCGACAAGTTG
GCTTGCCC
Run BLAST on NCBI

transcript from alignment at sc0000644:79622..85793-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027753 ID=TCONS_00027753|Name=TCONS_00027753|organism=Clytia hemisphaerica|type=transcript|length=6172bp|location=Sequence derived from alignment at sc0000644:79622..85793- (Clytia hemisphaerica)
GAAGATTTCGGGAAATGGTTAATATGAATGGTAAGCTTCTTCTCTTCTTC
TCGATCTTGGATGCTTTTTGTTTGATTTGATAATCTGCTACTGCGAAGCC
CAATACTGAATACACCTTTCCTGTAATTCAAATTTTGCAAGGGGAAGATT
GTCCTGCATCCCTTGTGTTTAAAAAGGTTTGGGGGAGGTGAACAAATCTG
TCTTGCTGGAGATTGTTTAGGGGAAGTCAATTTTATGTGCTAACACTTTG
GATGCTCGATTTTGTGTGGAATGAAATTTAAAGTTCAAAAACCACCTAGC
CAAGCAAATTCAAGCGAAAACCAGATAACGCCATTATACCTCCAATAATT
AAGCTCGGAAAGATTACGTAATAAAGTTCCCTGAAAGCAAAGGATTGGTC
GCACGCTGAGTTTTTATCTGCACAGTTGTTACCTATACAAGTGTCGGTGA
GGCAAGCTAGAAAGTAGAGATATAATCATTAAGCTCTTGGACTTTACATG
CTAATGATTGTATGACGTGTACTTTTTAGCTTGCTGTACAGAAACTTGTA
TTGGTAACAACCGTGCAGATAAAAACTCAGCACAGACCTGATCATCAAGG
TAGAGTTAAGTGCTATTCATCATCTTTCTTTCCCTCCACCGTACAGTACT
GGAATAAACTGCCCTCAAATGTTGCAAACCTTGTTGATGAAAGCGAATTT
AAAAAAGAAATAGATGAAAAATTAACTTTAGGAATTTAAAAACTATTACG
AAATCACTAAGATAGATAAAACTTAAACTAAACTACTTACTCATATCCTT
TTGCTAGTTTTTGAATAAATTCTCACACTTTCCACACTAATCTACCATGC
AAGCTAATCAACTCAAATCTGTCTGCTTAAAATTTAAGATTTCGGCATTA
AGATCATTTTATATTTTAGCTTTTTATATTTACATACATTTATTTATTTA
TATTAGATTTTAAATAAACTAACTTTTATACATAACTAACTTATATTTAA
ATATTATTTATTGCTGACAGCACATTTAAAATATTTTCATTTTTGTAATT
TTTACTTAGAATTTGCGAGATTAGGCTTAATTGTCTTATGAAAATACATA
CCTTATTGGAACTAATTTTCGCGGGAACTAATTTTCGCGGTCGAAAAAAA
ATCTGAAAAATTGCATTTCGCGGGTTTTAATTTTCGCGGTTTTGCACTCT
CAAAATTTTTCGCGGGATCAAATTTTCGCGATTTCGACGAAAAAACGCGA
AAAACGCTAAAATTAAAACCTGCGAAAATTAGTTCCAAAAAGGTAACTAG
AACTAGAATATCTGCTTTAAGGGAATTTCATTACGTAATCTTTCCGCGCT
TAATTATTGGAGGTATAATGGTGTCGTCTTTAAAAAATGGTCTATTAAAA
AAACAGTAGAGAGCAAATCTGGAGTCCCGGCATGGGAAAGGCCGGTGTAT
AAGATATTTTAGAAATATACTCTTAACTTGCCGACCGAAAAAAATTTTAT
CATTCTATCCTAGCAAAGAAAATTTTTTTGGTCTAAAAATCAAAAAGAAA
CTAAAAATTTCAAAAATCAACAAAATAAAAAAAATTTTCTGACCGACTGA
CCCTCCTACAAAATCTAGTGTCGGGTTACGGCAAACCAACATTTTTTACT
ATAGATTAAATCTAAATTTAATGTTTTTAGGTAATACATTACCTACAACA
ACAACAGTTACCAGTAAGTTGCGTTTAAATTGGCCTCTTTTTTTAATAAT
ACGACCCTGCCAGGACAGTCCGGTGCTTGAACTGCCGGTCTCAAGTGCTG
AATTTTCGAAATTTTCGAAAACACCCAACAATCGGCACCCGACACCGCCT
TCGGGGCGTTGGGCGGTTCTCCGCCCTGTATTTTCCCTGTCACTTTTATC
CGTGTGACCGCGTTGAGTTTGGTGATCACCCGCTTATGCCTCTTAAAGAG
TGCCTAATGGTGCCGTTTTATACATTAATTTAGGTTATCTGTAAAATTTA
TTTTTCTGCGACACAAGCAAATTGTCACGAGCAATCAATCTGAACTGAAC
TACCCTGTATTTATTTATTATATTATTGCCAATTTTTATTGTACTTATTG
AGTTGTTGGATTGGACTGAATGTTGCATAACCCTTTCTAGAAACTGGGCT
AATTTGAACTGAACTATCTATCTTCCTTATTGAGTTGTTGGAATGGACTG
AATATATATTGGAAAACCCTTTTCTGGAAACTGGGCAACAGCCAGGTGCT
TTTCAGCGGTGCTGAGCCTGAGCACCCGACAATTTAACACCCAACTGTCG
GGTTGCAAAATTTCTAAATTTCAGCACCCCACTGTCGGGTGCGTCGGCAG
GGTCGTTCTAATACTATGCACTGAGAAATATGTATGTACCATCGGATTGG
GTAAAAATCTGATGACTAAGAATCTTGGTGCTTTTCTGCTATTTTTCTTG
GTTATACCGGCTAAAATATTTTTAGAAATGGCCCAGAAAAATATGAGCCA
CTTACTGAATGACTCAATAACTTTCTAAATTTTATATTTCAACAAGCCAG
AGCTTTGCTCATTTTCTGTTTTCAAGTGGCAAGTGGATTCTTAGTCTGGG
AATCAGATTCTTACCCAATCCGACGGTATGTAAATATTTTGTTCCTATAA
TATGTTATTTTTTAAAGGGATAATCAAACAATTTCTTATATTTTACCTCT
TTATTTTTCAATATTTTGAATCTAGATGCTATTAAAACCTGATGATATTT
TCATATTTCACCTTCAGCTACTTACAGACCAAGAATATGTCTAACCAATT
CTGGCTCATGTAAGTTAATTTTCTAGGTCATTCTTTATTGAGACAGCCAG
TTTAAAATAATGGAGACCAAAAAGCAACTTGTGTAAAATTACTGGGGGAT
AAAAACTAACTTTCAACTTTCTGTCAGTAATCAAGGAACTAAAGATTGCC
ATGAAACTACTTTGTTACCCTAATTTATTTTTCTTATTGCTTATACTGAT
TGAATGATAGTATGTATATTGCTTTCTATTCTAGCAACCTGCACTCCATT
GGGCCTACCACCAATGGTGGCAAGAACTTTAGGTAATATTACCCCATTCA
CATTTTATGTAGGGATTTAAAAAAATTAAAACAGCAAAACAACAAATACA
ATTTTAAACCATAATGCTTCCTCAGAATTAAAATTATTTCAATTTTCTGT
TGATAGCTCATCCACTGGCCAGACCACCACCTCATCAAGTTGGCTTACCC
TCCAACAGTAAGTAAACAACCTTTTACAGTAACTTTAAAATTTATTCAAA
ATTACTATTGTACTTTTCTTTTTTATGGTTCAGTGACTTGATCTAGAAAG
TTAGAAAAAAAACTAGAAAGCACATATACAAGACTCCTCAGAAGAGTCAA
AAACCTTGGCTTGACCAGGCTTGACCACTCTAGCATGGCCCCGCCCCCCC
CCCCACTTATTTGGGGGTGTAAATCTAAAATCAGCCTAAAAGTGGTGGGG
GGGGCCTAAAAAAGTGGGGGGACCTGAAGGGCTGCACTGAAGTTCTGGGC
TGTTCTGGGGGCTAATTACAATAATTAAGGAATTATAAAAATATTTTTTT
GTTTTATTGAAATTGAAATAATTTTGTGCCAAATATTTTTTCTTTGCTGG
AACCTGAACCTTGAAAGTACTTTTTGCAGGGACCTGAACCTTTAGATTTC
AACTGAGACCTGAACCTTACTGAAAAGTGGGGGGACCTAAAACTTAGGGG
GGACCTAAATTTGTTGGGGGGACCTAGAACCCCATTCGGAGCCATGTCTA
GAAAAAATACCATTTATGAAACCAAAGCGAGTCCAATTTGGTGGACACTG
CCTTCGCACATCCTCTGAAGTTATATCTTCATTAGTACTCTGGAAAACCA
AGGTTTGTGAAACAGCAGTCAAGAAAATTTACATTTTAGTGATCAGGGCA
GCAAATAAGAAGTTCAAGTCTTTTAGTCATCCAGAAAGGGTTAAATACCA
AATATAAATATTCTAGGGGTTAAATTCTTTTAAAAGATTGCCATCAAATA
TTCTAGGGGTTAAATTCTTTTAAAAGATCGTCATCAAATATTCATTAAAG
CTTGTTTTTTTCGGTAAACATTTTTAAGTAGTTAAGATTCTATGGATTGA
ATTTTGAATATCCATCATGTTATTTTAGTTGTTCTTTGTTTATCTTATCT
CTTTGTTTGTTATTGGTTTTAATAATCAGGTAGGGCCATAAAAGTATCAC
TTGTTTCAATGTGTTAAAATGTAAGTGGTGCTTAACCTCCATTAGCATAT
CTAGTAAGTAAATAACCTTTTACATAAGTAAATTGTCTGTTATCTTTTTG
AATGTGTTCAACTGTAAGCAATGTTGCAAAAGTTTTCTAGAAATAAAGTA
TAAAATGTCTAACTTTTCTTTTTTAGCAACACAAACACAGAGAGAACAAA
ATCGACAAGTTGGCTTGCCCTCCATTAGTACATCTAGTAAGTAAACAACC
TTTTAAATAATTAACTTGCCCATTATCATTGTGAATGCGATCAACACTGT
AAGAATTCGGTGCTGCATATAATCTAAAAATAAAGTATAAAATGCTCAAC
TTTCCTCATTTTAGCAACACAAACACAGAGAGAACAAACTCGACAAGTTG
GCTTGCCCTCCATTAGTACATCTAGTAAGTAAACAACCTTTTACATAATT
AACTTGCCCATTATCATTGTGAATGCGATCAACACTGTAAGAATTTGGTG
CTGCATATAATCTAAAAATAAAGTATAAAATGCTCAATTTTCCTCTTTTT
ACTTTAGCAACACAAACACAGAGAGAACAAACTCGACAAGTTGGCTTGCC
CTCCATTAGTACATCTAGTAAGTAAACAACCTTTTACATAATTAACTTGC
CCATTATCATTGTGAATACGATCAGCACTGTAAGAATTCGGTGCTGCATA
TAATCTAAGAATAAAGTATAAAATGCTCAACTTTCCTCATTTTAGCAACA
CAAACACAGAGAGGACAAACTCGACAAGTTGGCTTGCCCTCCATTAGTAC
ATCTAGTAAGTAAACAACCTTTTAAATAATTAACTAGCCCATTATCATTG
TGAATGTGATCAGCACTGTAAGAATTTGGTGCTTCATATAATCTAAAAAT
AAAGTTTAAAATGCTTAACTTCCCTCTCTTTAGCACCACAAACACAGAGA
GAACAAACTCGACAAGTTGGCTTGCCCTCCATTAGTACATCTAGTAAGTG
AACAACCTTTTACATAATTGACTTGCCCATTATCATTGTGAATGTGATCA
GCACTGTAAGAATTCGGTGCTGCATATAATCTAAAAATAAAGTATAAAAT
GCTCAACTTTCCTCATTTTAGCAACACAAACACAGAGAGAACAAACTCGA
CAAGTTGGCTTGCCCTCCATTAGTACATCTAGTAAGTGAACAACCTTTTA
CATAATTAACTTGCCCATTATCATTGTGAATGTGATCAGCACTGTAAGAA
ATTGGTGCTTCATATAATCTAAAAATAAAGTTTAAAATGCTTAACTTTCC
TCTCTTTAGCACCACAAACACAGAGAGAACAAACTCAACAAGTTGGCTTG
CCCTCCATTAGTACATCTAGTAAGTAAACAACCTTTTACATAATTAACTT
GCCCATTATCATTGTGAATGCGATCAACACTGTAAGAATTTGGTGCTGCA
TATAATCTAAAAATAAAGTATAAAATGCTCAATTTTCCTCTTTTTGCTTT
AGCAACACAAACACAGAGAGGACAAACTCAACAAGTTGGCTTGCCCTCCA
TTAATACATCTAGTAAGTAAACAACCTTTTAAATAATTAACTTGCCCATT
ATCATTGTGAATGTGATCAGCACTGGAAGAATTTGGTGCTTCATATAATC
TAAAAATAAAGTTTAAAATGCTTAACTTTCCTCTCTTTAGCACCACAAAC
ACAGAGAGAACAAACTGGACAAGTTGGCTTGCCCTCCATTAGTACATCTA
GTAAGTAAACAACCTTTTACATAAATAACTTGCCCATTATCATTGTGAAT
GTGATCAGCACTGTAAGAATTTGGTGCTTCATATAATCTAAATATAAAGT
TTAAAATGCTTAACTTTCCTCTCTTTAGCACCACAAACACAGAGAGAACA
AACTCGACAAGTTGGCTTGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015671XLOC_015671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027753-exon-sc0000644-1575043694:85764..85793TCONS_00027753-exon-sc0000644-1575043694:85764..85793Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1575043694:84081..84113TCONS_00027753-exon-sc0000644-1575043694:84081..84113Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1575043694:82985..83026TCONS_00027753-exon-sc0000644-1575043694:82985..83026Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1575043694:82712..82759TCONS_00027753-exon-sc0000644-1575043694:82712..82759Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1575043694:82537..82587TCONS_00027753-exon-sc0000644-1575043694:82537..82587Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1575043694:80363..80422TCONS_00027753-exon-sc0000644-1575043694:80363..80422Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1575043694:79622..79665TCONS_00027753-exon-sc0000644-1575043694:79622..79665Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1510915933:85764..85793TCONS_00027753-exon-sc0000644-1510915933:85764..85793Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1510915933:84081..84113TCONS_00027753-exon-sc0000644-1510915933:84081..84113Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1510915933:82985..83026TCONS_00027753-exon-sc0000644-1510915933:82985..83026Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1510915933:82712..82759TCONS_00027753-exon-sc0000644-1510915933:82712..82759Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1510915933:82537..82587TCONS_00027753-exon-sc0000644-1510915933:82537..82587Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1510915933:80363..80422TCONS_00027753-exon-sc0000644-1510915933:80363..80422Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1510915933:79622..79665TCONS_00027753-exon-sc0000644-1510915933:79622..79665Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1491911889:85764..85793TCONS_00027753-exon-sc0000644-1491911889:85764..85793Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1491911889:84081..84113TCONS_00027753-exon-sc0000644-1491911889:84081..84113Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1491911889:82985..83026TCONS_00027753-exon-sc0000644-1491911889:82985..83026Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1491911889:82712..82759TCONS_00027753-exon-sc0000644-1491911889:82712..82759Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1491911889:82537..82587TCONS_00027753-exon-sc0000644-1491911889:82537..82587Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1491911889:80363..80422TCONS_00027753-exon-sc0000644-1491911889:80363..80422Clytia hemisphaericaexon
TCONS_00027753-exon-sc0000644-1491911889:79622..79665TCONS_00027753-exon-sc0000644-1491911889:79622..79665Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000644supercontigsc0000644:79622..85793 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	26.8989	22.4863	10.0081	16.8887	4.20915	4.83194	3.57213	4.33829	2.8712	0.29886	0	0	0	0	0	0	0	0	0	0	0.823824	2.06797	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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