TCONS_00027755 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027755
Unique NameTCONS_00027755
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027755 ID=TCONS_00027755|Name=TCONS_00027755|organism=Clytia hemisphaerica|type=transcript|length=249bp
AATACATTACCTACAACAACAACAGTTACCACTACTTACAGACCAAGAAT
ATGTCTAACCAATTCTGGCTCATCAACCTGCACTCCATTGGGCCTACCAC
CAATGGTGGCAAGAACTTTAGCTCATCCACTGGCCAGACCACCACCTCAT
CAAGTTGGCTTACCCTCCAACACAACACAAACACAGAGAGAACAAACTCG
ACAAGTTGGCTTGCCCTCCATTAGTACATCTACAACACAAACACAGAGA
Run BLAST on NCBI

transcript from alignment at sc0000644:80782..84111-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027755 ID=TCONS_00027755|Name=TCONS_00027755|organism=Clytia hemisphaerica|type=transcript|length=3330bp|location=Sequence derived from alignment at sc0000644:80782..84111- (Clytia hemisphaerica)
AATACATTACCTACAACAACAACAGTTACCAGTAAGTTGCGTTTAAATTG
GCCTCTTTTTTTAATAATACGACCCTGCCAGGACAGTCCGGTGCTTGAAC
TGCCGGTCTCAAGTGCTGAATTTTCGAAATTTTCGAAAACACCCAACAAT
CGGCACCCGACACCGCCTTCGGGGCGTTGGGCGGTTCTCCGCCCTGTATT
TTCCCTGTCACTTTTATCCGTGTGACCGCGTTGAGTTTGGTGATCACCCG
CTTATGCCTCTTAAAGAGTGCCTAATGGTGCCGTTTTATACATTAATTTA
GGTTATCTGTAAAATTTATTTTTCTGCGACACAAGCAAATTGTCACGAGC
AATCAATCTGAACTGAACTACCCTGTATTTATTTATTATATTATTGCCAA
TTTTTATTGTACTTATTGAGTTGTTGGATTGGACTGAATGTTGCATAACC
CTTTCTAGAAACTGGGCTAATTTGAACTGAACTATCTATCTTCCTTATTG
AGTTGTTGGAATGGACTGAATATATATTGGAAAACCCTTTTCTGGAAACT
GGGCAACAGCCAGGTGCTTTTCAGCGGTGCTGAGCCTGAGCACCCGACAA
TTTAACACCCAACTGTCGGGTTGCAAAATTTCTAAATTTCAGCACCCCAC
TGTCGGGTGCGTCGGCAGGGTCGTTCTAATACTATGCACTGAGAAATATG
TATGTACCATCGGATTGGGTAAAAATCTGATGACTAAGAATCTTGGTGCT
TTTCTGCTATTTTTCTTGGTTATACCGGCTAAAATATTTTTAGAAATGGC
CCAGAAAAATATGAGCCACTTACTGAATGACTCAATAACTTTCTAAATTT
TATATTTCAACAAGCCAGAGCTTTGCTCATTTTCTGTTTTCAAGTGGCAA
GTGGATTCTTAGTCTGGGAATCAGATTCTTACCCAATCCGACGGTATGTA
AATATTTTGTTCCTATAATATGTTATTTTTTAAAGGGATAATCAAACAAT
TTCTTATATTTTACCTCTTTATTTTTCAATATTTTGAATCTAGATGCTAT
TAAAACCTGATGATATTTTCATATTTCACCTTCAGCTACTTACAGACCAA
GAATATGTCTAACCAATTCTGGCTCATGTAAGTTAATTTTCTAGGTCATT
CTTTATTGAGACAGCCAGTTTAAAATAATGGAGACCAAAAAGCAACTTGT
GTAAAATTACTGGGGGATAAAAACTAACTTTCAACTTTCTGTCAGTAATC
AAGGAACTAAAGATTGCCATGAAACTACTTTGTTACCCTAATTTATTTTT
CTTATTGCTTATACTGATTGAATGATAGTATGTATATTGCTTTCTATTCT
AGCAACCTGCACTCCATTGGGCCTACCACCAATGGTGGCAAGAACTTTAG
GTAATATTACCCCATTCACATTTTATGTAGGGATTTAAAAAAATTAAAAC
AGCAAAACAACAAATACAATTTTAAACCATAATGCTTCCTCAGAATTAAA
ATTATTTCAATTTTCTGTTGATAGCTCATCCACTGGCCAGACCACCACCT
CATCAAGTTGGCTTACCCTCCAACAGTAAGTAAACAACCTTTTACAGTAA
CTTTAAAATTTATTCAAAATTACTATTGTACTTTTCTTTTTTATGGTTCA
GTGACTTGATCTAGAAAGTTAGAAAAAAAACTAGAAAGCACATATACAAG
ACTCCTCAGAAGAGTCAAAAACCTTGGCTTGACCAGGCTTGACCACTCTA
GCATGGCCCCGCCCCCCCCCCCACTTATTTGGGGGTGTAAATCTAAAATC
AGCCTAAAAGTGGTGGGGGGGGCCTAAAAAAGTGGGGGGACCTGAAGGGC
TGCACTGAAGTTCTGGGCTGTTCTGGGGGCTAATTACAATAATTAAGGAA
TTATAAAAATATTTTTTTGTTTTATTGAAATTGAAATAATTTTGTGCCAA
ATATTTTTTCTTTGCTGGAACCTGAACCTTGAAAGTACTTTTTGCAGGGA
CCTGAACCTTTAGATTTCAACTGAGACCTGAACCTTACTGAAAAGTGGGG
GGACCTAAAACTTAGGGGGGACCTAAATTTGTTGGGGGGACCTAGAACCC
CATTCGGAGCCATGTCTAGAAAAAATACCATTTATGAAACCAAAGCGAGT
CCAATTTGGTGGACACTGCCTTCGCACATCCTCTGAAGTTATATCTTCAT
TAGTACTCTGGAAAACCAAGGTTTGTGAAACAGCAGTCAAGAAAATTTAC
ATTTTAGTGATCAGGGCAGCAAATAAGAAGTTCAAGTCTTTTAGTCATCC
AGAAAGGGTTAAATACCAAATATAAATATTCTAGGGGTTAAATTCTTTTA
AAAGATTGCCATCAAATATTCTAGGGGTTAAATTCTTTTAAAAGATCGTC
ATCAAATATTCATTAAAGCTTGTTTTTTTCGGTAAACATTTTTAAGTAGT
TAAGATTCTATGGATTGAATTTTGAATATCCATCATGTTATTTTAGTTGT
TCTTTGTTTATCTTATCTCTTTGTTTGTTATTGGTTTTAATAATCAGGTA
GGGCCATAAAAGTATCACTTGTTTCAATGTGTTAAAATGTAAGTGGTGCT
TAACCTCCATTAGCATATCTAGTAAGTAAATAACCTTTTACATAAGTAAA
TTGTCTGTTATCTTTTTGAATGTGTTCAACTGTAAGCAATGTTGCAAAAG
TTTTCTAGAAATAAAGTATAAAATGTCTAACTTTTCTTTTTTAGCAACAC
AAACACAGAGAGAACAAAATCGACAAGTTGGCTTGCCCTCCATTAGTACA
TCTAGTAAGTAAACAACCTTTTAAATAATTAACTTGCCCATTATCATTGT
GAATGCGATCAACACTGTAAGAATTCGGTGCTGCATATAATCTAAAAATA
AAGTATAAAATGCTCAACTTTCCTCATTTTAGCAACACAAACACAGAGAG
AACAAACTCGACAAGTTGGCTTGCCCTCCATTAGTACATCTAGTAAGTAA
ACAACCTTTTACATAATTAACTTGCCCATTATCATTGTGAATGCGATCAA
CACTGTAAGAATTTGGTGCTGCATATAATCTAAAAATAAAGTATAAAATG
CTCAATTTTCCTCTTTTTACTTTAGCAACACAAACACAGAGAGAACAAAC
TCGACAAGTTGGCTTGCCCTCCATTAGTACATCTAGTAAGTAAACAACCT
TTTACATAATTAACTTGCCCATTATCATTGTGAATACGATCAGCACTGTA
AGAATTCGGTGCTGCATATAATCTAAGAATAAAGTATAAAATGCTCAACT
TTCCTCATTTTAGCAACACAAACACAGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015671XLOC_015671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027755-exon-sc0000644-1575043694:84081..84111TCONS_00027755-exon-sc0000644-1575043694:84081..84111Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1575043694:82985..83026TCONS_00027755-exon-sc0000644-1575043694:82985..83026Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1575043694:82712..82759TCONS_00027755-exon-sc0000644-1575043694:82712..82759Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1575043694:82537..82587TCONS_00027755-exon-sc0000644-1575043694:82537..82587Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1575043694:80927..80986TCONS_00027755-exon-sc0000644-1575043694:80927..80986Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1575043694:80782..80798TCONS_00027755-exon-sc0000644-1575043694:80782..80798Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1510915933:84081..84111TCONS_00027755-exon-sc0000644-1510915933:84081..84111Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1510915933:82985..83026TCONS_00027755-exon-sc0000644-1510915933:82985..83026Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1510915933:82712..82759TCONS_00027755-exon-sc0000644-1510915933:82712..82759Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1510915933:82537..82587TCONS_00027755-exon-sc0000644-1510915933:82537..82587Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1510915933:80927..80986TCONS_00027755-exon-sc0000644-1510915933:80927..80986Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1510915933:80782..80798TCONS_00027755-exon-sc0000644-1510915933:80782..80798Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1491911889:84081..84111TCONS_00027755-exon-sc0000644-1491911889:84081..84111Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1491911889:82985..83026TCONS_00027755-exon-sc0000644-1491911889:82985..83026Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1491911889:82712..82759TCONS_00027755-exon-sc0000644-1491911889:82712..82759Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1491911889:82537..82587TCONS_00027755-exon-sc0000644-1491911889:82537..82587Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1491911889:80927..80986TCONS_00027755-exon-sc0000644-1491911889:80927..80986Clytia hemisphaericaexon
TCONS_00027755-exon-sc0000644-1491911889:80782..80798TCONS_00027755-exon-sc0000644-1491911889:80782..80798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000644supercontigsc0000644:80782..84111 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	91.8876	80.9048	44.1216	87.3745	6.84256	19.5176	10.1883	5.47022	6.19861	3.96561	0	0	0	0	0	0	0	0	0	0	10.7517	18.8747	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027755 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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