TCONS_00027759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027759
Unique NameTCONS_00027759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027759 ID=TCONS_00027759|Name=TCONS_00027759|organism=Clytia hemisphaerica|type=transcript|length=365bp
GGATGATATCCAGAATTTGATGTCCAAATCAGTCCAAAACTGTCACTTTT
AATATGTATCGTCTTATTGCGATGTATGGTCTGCTAACATACAAATAATC
AATCGTCTTATTGCGATTTATAGTCTGCCACCCTTCCACCCTTGTTCAGA
CTTTAGCATTTGGTGATGCCCAATTCCGGCTAGCTGGCAGTTTATTTTTA
ATACGTATCGTCTTATTGCGATGTATAGTATGCCAACATATACTTTTATA
TCTATCGTCTTATTGCGATATAGTCTGCCATCCGTCCATTCTATTCCTGA
TTTTAGCATTTAGTGATGCCCGACTCCAGCTAGCTGTAATTTGATAAGTA
TGGTCTTATTGCGAT
Run BLAST on NCBI

transcript from alignment at sc0000644:22579..22943

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027759 ID=TCONS_00027759|Name=TCONS_00027759|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at sc0000644:22579..22943 (Clytia hemisphaerica)
ATCGCAATAAGACCATACTTATCAAATTACAGCTAGCTGGAGTCGGGCAT
CACTAAATGCTAAAATCAGGAATAGAATGGACGGATGGCAGACTATATCG
CAATAAGACGATAGATATAAAAGTATATGTTGGCATACTATACATCGCAA
TAAGACGATACGTATTAAAAATAAACTGCCAGCTAGCCGGAATTGGGCAT
CACCAAATGCTAAAGTCTGAACAAGGGTGGAAGGGTGGCAGACTATAAAT
CGCAATAAGACGATTGATTATTTGTATGTTAGCAGACCATACATCGCAAT
AAGACGATACATATTAAAAGTGACAGTTTTGGACTGATTTGGACATCAAA
TTCTGGATATCATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015675XLOC_015675Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027759-exon-sc0000644-1491911889:22579..22943TCONS_00027759-exon-sc0000644-1491911889:22579..22943Clytia hemisphaericaexon
TCONS_00027759-exon-sc0000644-1510915933:22579..22943TCONS_00027759-exon-sc0000644-1510915933:22579..22943Clytia hemisphaericaexon
TCONS_00027759-exon-sc0000644-1575043694:22579..22943TCONS_00027759-exon-sc0000644-1575043694:22579..22943Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000644supercontigsc0000644:22579..22943 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.81937	3.1048	2.57498	0.312089	0	0	0	0	2.57088	1.66167	2.7649	3.44311	2.11751	3.02805	2.97016	2.18955	1.70682	4.37467	4.10768	1.26489	3.51814	2.8958	2.08606	2.60772	0	0	1.87104	0.998412	0.75726	0.257176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top